rna3390, rna3390 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3390
Unique Name	rna3390
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3141
Alignment location	CM002461.1:292372..294376 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100080g8.2849.mrna
Orig protein id	gnl\|cribi\|Naga_100080g8.2849
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:292372..294376 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100080g8	gene3265	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3390	rna3390-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27285.1	cds3381	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002461.1:292372..294376+
coding sequence from alignment at CM002461.1:292372..294376+

mRNA sequence

>rna3390 ID=rna3390|Name=rna3390|organism=Nannochloropsis gaditana|type=mRNA|length=3141bp
TAACTGGTTGTGGTTGTCATGGCAGGCACACCGGCTGAGGGATGTGAGTC
AAAGCAAAGACGGTCTCCAATTGGTGCAGATAGGGTCAAGCCTTTCCTGC
AGCTGGCAAGCGTGTCGGGAGGGGGGTTGCTCACTGGGAGGGACCAGGAT
GCTGGGCTTCCCGGGGTCCCCCAAGACGAAAAAGAGACATTTCCTCCCTA
CGATTTCCCTCAAGAGCATCGACAATCCACCAGAAGCGCGGCTGCTTTCT
ATAATGCGACAAACTACACAGCTGGCCCATCTGCTGGGTCAGACAATCGC
TTGCGCCGCCGAAGCGAGACAGGGCAAGCAATCCTCGTACCCGCCGTCAT
GTGCGGGTTTTTAGGGCCCTTATGTTGGGTATTTGGACGTCAAGGCTGGT
CATACTCGTACGCGCTATGGTCGTCGACCCTGGTTATCTACGCCGTCTAT
GGATTGCGGGAGCGTTTGCGTCGAGCTGCCAGGATGGAGGCCACGCGAAT
CGCTTCTCGCAAGCGGATCCTACAGGAAGACGAAACAGCGGAGTGGCTCA
ACATAATCCTTTTTCGCGTCTGGCAATTCCACGAGCCTCTGCTGTCTGCA
AATCTCCGACAAGATTTCTTGCAGAAGCTGGATGCAGTGCGTCCTTCCCG
GGTCTTGGCGTTTGAGATTCCCCTCTTTACGCTGGGGAAGAAATCCCCTT
TCATGAGCTCGGCGCGGATCATCACCAAAACCCAGTTTTCGGATAGCAAA
GTCCCAGAGGACAGGATTGTCATGCATTTGACCATGGGATTTCAGGCGCC
AGGCTTGGAGATCGTCATTTTGGCAAAGACCAGCTATGGGACCATTCCCA
TCAAAATCAAAGACTTCTACTTGCAAGGACGCATGCGGTGCGAGATGGAC
CTTATCCCCAAGTACCCACACATTCAGACCGCTTCGTTTACATTTTTGGA
GACGCCCGTGTGCGAATTCGACATCCAGCCCATGGGTGTGAGCCTCATGG
AGGTACCTTACTTGGCGGCCATCGTCCAAGCCCAGATCGTCCACGGGATC
AACGAGCATCTCCTGGACCCCGCCAAAGTTGTCTTCAATCTGATCGAGAC
GCAGTCGGAGGCAACTTCCATCGAGGCTGCGGACGGTATCATGCTTGTGA
CACTTTTGGAAGTCGAATTGCCCCAGGGCGGACGTGTGTTTGGAAGCAGC
GCGCATCCCAAAGAAAACAATTCCTTGGCCGCAAGTGCATACAATGTCAA
ATTGCATGTAGGAGATGACGTTATGTACACAAAGAATGTTCGGGAGGAGG
AGGGTGCGCCCGAAGAATCCTGGGGCGGAAGAATGCGTATGCTCGGCGCC
CCATCCACCACTGCCTTCAATTCAATGGGCAGCGGCCCCGCCCTCACCAG
TCCCCGCCGGCCGGATCGCCTCAGCAAGGCTCTGAGTCGGAGGCTCAATT
TGAATCATCGCGAGATCCGCCAACCCCGGCTCGTGTTTGGTGGCGAGACG
TTTGCGTTTTTGATCGGCGGCAATGTCGGGGCGGTGGACACGGTGCAACT
GACCCTGAATCAAAAACGGACCCAAACCTCGCGGACCATCTGCTCGCTTA
CCGTGCCGTTGGAAGAGGCATTGAATCCCAGAGCTCCGGCAGGCGGCTTG
CAGGTCCAGGTTCCCTTGTTGGACGGACAAGCGGATGGCCGGGGGGAGAT
CACCCTGGGGCTACGTTACATGCGATTACCGGAGATTGTGCTCGAGCAAA
CCCTGCCAACAGTCATCCACCGCGTCAACGAGCGGACCTTAAGCCCCGTG
AATATGGATGCCGACTCCCTGGGGCTGCTCAAAGACACCGACCACCCGCA
CGCGGGCTCCCTCGTCATCATCCTGCACAAGGCAGAAGAGTTGCCCTCCG
TCGATGTCCTCGGGGTCCAGGACTGCTATGCCGTCGTCTTTGCCGGGGAA
CGCGAGATCTTCCGCACCAAAAAATCGCCCACCAAAACTTTGTCGCCGGA
GTGGGAGCAAAGTCGGGAATTCAGCACCTTTGACGTGCGTCGGATACGCT
TGAAGGTGGCGATATTCGACACGGGCCGCAATGGCGGGGAAAAAGGGGCA
ATGGCGGAAGCAGACATGGACTTGTGCAGTCTTTTCACCACCGAGGAGGC
CATTCATTTCGGCCGTCGGGCCTCGCGTATCCACAAACGCTACCTGCGCC
TCCACAGACCCAGCGGGGGTTCCAAGCCTTGCAAGGGACACGGAGGACTG
GGCGGCAAGGATGCCAATGAGCTCAAGCATACGCGCAAGACCTACGATGC
GGGGGGAGGAGGTCAGGAACGCGGCAAATCTTCCGGCTTTGTGTGCGTGT
CCCTGCTGTTTCGACCGCTACCAGCCCAGGCGGTGGCCCCAGAGCTGCTC
TTTCATGGCACCCTGGAGAGTCACGACACATACACCTTGGACAGGCCGCA
GGCCGATCCCTACCAGGAAACGGCCGCAGAGAGTTCGAAAACTCGCAAGA
CGAGGCGAGGAAAAGCAGGAGCGTGGCCGTCCACGTCGAAGTCCAAAACC
GCGCGAGCCACCGTGCGCTCGCCCACGGGGGTGGCGGAGGACGGCGTGGG
AAGCCATCCAGACGAGCATTTGCAAGGGGAAGACCGTCCACCTAGAACGT
CCAGGACCGGCATTTCGCGCTTCTTTCAGACTCGCCGATGGCGCGCGACG
ACTCCGTCAGAGAAACAATCAATCACTGACAAGCCTCACCCGCTGTCATC
GACCATAAGTGTGCTCTTTGAGGAGGAAGGATCAAACGAGTAACCGTTGG
TGAGCGCGGATAAAAACGCAGCGTGCTTAGACATGTTGGTGGCCAAGCTT
TTCTGCATGTGTCACGACGAGGGGGGGAAAGCCGAATCACCCACAGGGAG
GGATAAACGGATACGTCTCAAGACAGGCTCAAATACACCTTACAGACAGA
AGGGGGCATTTTGCTGTCGTGAACTTCTATCTCAAAGACAGCATCGAGCC
GGAGAAACAAGGAGTAACATCCGGTGGAAGACAGTATTTGCGCAGAGAGA
AGAGCCTCCTTTTGCGTCTATTTCATCCGAGATCGCTGGGTAGAGGGCTC
AAATCGCATCAATGGTAACCAATTTCGGACAATGCACCGTG

protein sequence of rna3390

>rna3390-protein ID=rna3390-protein|Name=rna3390|organism=Nannochloropsis gaditana|type=polypeptide|length=520bp
MAGSRKKGKQSRDGYSKKDQAHKWLQMLAEAHYQLRRSGNTTATTATAAT
RKESAANCNANGGWAQRFRLRHQHHMHAGYRWSQSGSGGPRLNPLEAARF
IESYLREPSTAASAAWVYKVTGRTGRREGAETRKATGGTRRDRGLCEWWQ
RVGESSESGSLCADRRVDEKPNGVVTLTELCCRQIGADLALYGAATAAGS
DPMTAQMADLAIHSEDKQKTESSLVASTRTVSDGSADGRVEERGNEGEGE
GEGRLTYRGGLEGISETSVAASIRTMFSLLPPMCLAHISLAASLAQAVTD
AALPLLCQPSALCLALVGDYTDEGLIKALSPRLGNAFAQFSWECARVEPR
LEGCVALESLYLRSPCLTPSCLGEVGGRLSTVKSLTLSRCFNADVTMTAK
EVLAHIGASWHYLEELSLEGCRWLSEKAVLKWAGGKEKVMNARGREGGEG
GKEWVDEEAAVWQMGKRLGRDIPSVLGLEASLSPCAPPAALRRLRVDVRL
ANRALVRQAWESRGVVVEEW

mRNA from alignment at CM002461.1:292372..294376+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3390 ID=rna3390|Name=rna3390|organism=Nannochloropsis gaditana|type=mRNA|length=2005bp|location=Sequence derived from alignment at CM002461.1:292372..294376+ (Nannochloropsis gaditana)
GATATTTCCGGGGCTCACAGTCTCATGTTCAGTGCTAATTTTCTTCACAC
AAAAATGTGTCGGGCCGTGTTGGCTCTTCTCTGCTTTATATTGTGTGCTT
CTATGGCGTGCCCGTCCGATGCATCCATGGACAGCATGAACGCAGTGGCG
CTGCTTCACATTCGATTAAGACTCCTATCATGTCAATTTACGATAAACAG
GAGTGGCAACCATGGCGGGAAGccggaaaaaggggaagcaATCCAGGGAC
GGATATTCCAAAAAGGACCAAGCACACAAATGGCTTCAGATGCTAGCTGA
AGCCCACTATCAACTACGACGGTCGGGCAACACCACAGCCACGACAGCTA
CCGCTGCAACGAGAAAGGAAAGTGCAGCCAATTGCAATGCAAATGGTGGC
TGGGCTCAAAGATTCCGGCTTCGGCATCAACATCACATGCACGCGGGGTA
CCGATGGAGTCAGTCTGGGTCGGGGGGGCCGCGGCTGAATCCTCTGGAGG
CCGCCCGCTTTATCGAGTCCTATTTAAGAGAACCGTCGACCGCTGCGTCC
GCTGCATGGGTGTATAAGGTCacgggaaggacgggaaggagggagggggc
ggagacaAGGAAGGCTACAGGGGGAACCAGGAGAGACCGGGGCTTGTGCG
AGTGGTGGCAGCGGGTAGGGGAAAGTTCGGAGAGCGGCAGCTTGTGCGCC
GACCGAAGAGTGGACGAGAAGCCTAATGGTGTAGTGACATTGACGGAGCT
TTGTTGTCGGCAAATCGGCGCGGACCTCGCGTTGTACGGGGCAGCTACCG
CGGCGGGCTCCGACCCGATGACGGCCCAAATGGCAGATTTAGCCATCCAC
TCTGAGGACAAGCAAAAAACTGAATCCTCCTTAGTCGCGAGCACGAGGAC
GGTATCTGACGGGAGTGCGGATGGACgcgtggaagagagggggaatgagg
gggaaggggagggagaggggaggttgacgTATCGTGGGGGACTGGAAGGC
ATTTCGGAGACGTCAGTAGCAGCGTCAATACGGACTATGTTtagcctcct
tccccccatgtGCTTGGCCCATATCTCCCTCgcggcctccctcgcccagg
cgGTCACGGACGCGGCCCTGCCCTTGTTGTGCCAGCCGAGCGCCCTTTGT
CTGGCTTTGGTGGGCGACTACACCGACGAAGGCTTGATTAAAGCGCTGTC
CCCTCGTTTGGGGAACgcgttcgcgcaattttcgtGGGAATGTGCCCGGG
TCGAACCTCGACTGGAGGGGTGTGTGGCGTTGGAGTCCTTGTACCTGAGA
AGCCCGTGCCTGACCCCGTCGTGtttgggggaggtgggcgggCGGCTCTC
CACGGTCAAGAGCCTCACCCTCTCTCGCTGCTTCAATGCTGACGTGACCA
TGACTGCCAAGGAGGTGCTCGCCCACATCGGCGCGTCCTGGCATTACCTG
GAGGAGCTTAGCTTGGAGGGCTGTCGTTGGCTTTCGGAAAAGGCCGTGCT
CAAgtgggcaggggggaaggaaaaggtcaTGAACGcccgggggcgggagg
ggggcgagggagggaaagagtgggtggacgaggaggcggccgtatGGCAA
ATGGGGAAGCGGCTCGGGCGAGATATTCCTTCGGTGCTGGGATTGGAGGC
ATCGCTCTCTCCTTGTGCGCCCCCTGCGGCCTTGCGTCGGTTGCGCGTAG
ATGTGCGCCTTGCAAACAGAGCATTGGTCCGGCAAGCTTGGGAATCGCGG
GGcgtcgtggtggaggaatggTGAGAGGAGAAGCGAGCGGTGGGGCTGTC
TACAAGGTTTGCGATGGATGAGAGAAGCATGGTATACCCCAGGCAACGTA
TGCTGCCAGGACTGGCTCGCCAATGATTGAATTgtgagcgggggaggact
tCGTCTAGGGCTTGGTCGTCGAAGGAGGTGTGGTGTTGGCTGTGGGCgtg
aggaaaaaagggatCAAAGTAATGTAGTCATGTAGATAAGTAGCGACAGG
AGGAG

Coding sequence (CDS) from alignment at CM002461.1:292372..294376+

>rna3390 ID=rna3390|Name=rna3390|organism=Nannochloropsis gaditana|type=CDS|length=1563bp|location=Sequence derived from alignment at CM002461.1:292372..294376+ (Nannochloropsis gaditana)
ATGGCGGGAAGccggaaaaaggggaagcaATCCAGGGACGGATATTCCAA
AAAGGACCAAGCACACAAATGGCTTCAGATGCTAGCTGAAGCCCACTATC
AACTACGACGGTCGGGCAACACCACAGCCACGACAGCTACCGCTGCAACG
AGAAAGGAAAGTGCAGCCAATTGCAATGCAAATGGTGGCTGGGCTCAAAG
ATTCCGGCTTCGGCATCAACATCACATGCACGCGGGGTACCGATGGAGTC
AGTCTGGGTCGGGGGGGCCGCGGCTGAATCCTCTGGAGGCCGCCCGCTTT
ATCGAGTCCTATTTAAGAGAACCGTCGACCGCTGCGTCCGCTGCATGGGT
GTATAAGGTCacgggaaggacgggaaggagggagggggcggagacaAGGA
AGGCTACAGGGGGAACCAGGAGAGACCGGGGCTTGTGCGAGTGGTGGCAG
CGGGTAGGGGAAAGTTCGGAGAGCGGCAGCTTGTGCGCCGACCGAAGAGT
GGACGAGAAGCCTAATGGTGTAGTGACATTGACGGAGCTTTGTTGTCGGC
AAATCGGCGCGGACCTCGCGTTGTACGGGGCAGCTACCGCGGCGGGCTCC
GACCCGATGACGGCCCAAATGGCAGATTTAGCCATCCACTCTGAGGACAA
GCAAAAAACTGAATCCTCCTTAGTCGCGAGCACGAGGACGGTATCTGACG
GGAGTGCGGATGGACgcgtggaagagagggggaatgagggggaaggggag
ggagaggggaggttgacgTATCGTGGGGGACTGGAAGGCATTTCGGAGAC
GTCAGTAGCAGCGTCAATACGGACTATGTTtagcctccttccccccatgt
GCTTGGCCCATATCTCCCTCgcggcctccctcgcccaggcgGTCACGGAC
GCGGCCCTGCCCTTGTTGTGCCAGCCGAGCGCCCTTTGTCTGGCTTTGGT
GGGCGACTACACCGACGAAGGCTTGATTAAAGCGCTGTCCCCTCGTTTGG
GGAACgcgttcgcgcaattttcgtGGGAATGTGCCCGGGTCGAACCTCGA
CTGGAGGGGTGTGTGGCGTTGGAGTCCTTGTACCTGAGAAGCCCGTGCCT
GACCCCGTCGTGtttgggggaggtgggcgggCGGCTCTCCACGGTCAAGA
GCCTCACCCTCTCTCGCTGCTTCAATGCTGACGTGACCATGACTGCCAAG
GAGGTGCTCGCCCACATCGGCGCGTCCTGGCATTACCTGGAGGAGCTTAG
CTTGGAGGGCTGTCGTTGGCTTTCGGAAAAGGCCGTGCTCAAgtgggcag
gggggaaggaaaaggtcaTGAACGcccgggggcgggaggggggcgaggga
gggaaagagtgggtggacgaggaggcggccgtatGGCAAATGGGGAAGCG
GCTCGGGCGAGATATTCCTTCGGTGCTGGGATTGGAGGCATCGCTCTCTC
CTTGTGCGCCCCCTGCGGCCTTGCGTCGGTTGCGCGTAGATGTGCGCCTT
GCAAACAGAGCATTGGTCCGGCAAGCTTGGGAATCGCGGGGcgtcgtggt
ggaggaatggTGA

Synonyms

Publications