rna3388, rna3388 (mRNA) Nannochloropsis gaditana

Overview
Namerna3388
Unique Namerna3388
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1242
Alignment locationCM002461.1:287823..288906 +

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Properties
Property NameValue
ProductRibosomal protein S27/S33, mitochondrial
Orig transcript idgnl|cribi|Naga_100080g5.2840.mrna
Orig protein idgnl|cribi|Naga_100080g5.2840
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:287823..288906 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100080g5gene3263Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3388rna3388-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27276.1cds3379Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3388 ID=rna3388|Name=rna3388|organism=Nannochloropsis gaditana|type=mRNA|length=1242bp
GGCCTCAAATGAAAGAAAAACCAATGTCCGTGGCGCTTCTTGCCACGTTG
CTGATTTCTGTGCCTCTCACAGCTAGTTTCCAGCCTCCCTTTGCTGCACG
TCCGCCCCCCGTCCCCTCATTCCACAGCCCCGTTAGTACGACCCGCGCTT
TACTAGGTAGACGACTCCCATTACACCCGACAAGTGTGAGGCACGCACGT
GAGAAATCTAAGGAGCTCTCCAATACTGACGGCAACGATGGTAGTTCTAC
CCTGGAGGAGCGAGGTCTCCGGTCCTACGTCACTGGCTTAGCCTGGTTAG
GTTTCGTGGGCTACGCTTTCTTGTGTGCGCCGGGAATGGACGAGGCGGCG
AAAGTTTTGGATGCCCAGCTTCTCAAGGTAAGGAAAAACATGTAGTTGTC
GTGGGTTGTCGCACACGAGGTGCTCCAAATGGAGCCTGGGCCTTGTCTCA
GTCCCAGTGTGGCTGTTACAATCTCTCAGAACAGCTAAGGAATCGGCTGG
AATGGCAGCACGTGGCCCCCTCCATTGCGTTCCCGTCCCAGTCAGACGTT
CATCAGGTGCCCCCATTCCGTCTGAGCATTGCCGAAGCCTTTCATCCCCC
TTTTCAAACACTACCAGGACATCATCGCAGATCCTTTCTCCCCGGCAGTG
CCCAGCATCTTCGTCGCCATCTTCAACGCCCTAGGCCTCATGCCATTCGT
ATACACCTCCCTCCTCCTCTCGGGCTCTCGCGATCAAATCCCGCCCGCCT
GGCCCTTTACCCTCGCTTCCTTCGCCCTGGGGTTCTTTGCCCTGGGCCCC
TACCTCGCCCTCCGCCGCTACCGACCCTTTCCCGACACCGCCCATGCCTC
CCCGTGGCTGACGCGCGTCATGGAGAGCAAACTCCCTGCCCTCCTCGCCT
TCCTTGCCTCCCTGTACCTGGCCTGGCTGATCGTGGACGGCCTCGTAAGC
GCGGGCGGGCGGGAAGCTTACCTCTCTCTCTTCTACTCCCAGACACTGCC
GCACGTCTCCTCGCTGGACCTGGGCCTCCTCTCCCTCTTTGTCGTCGACC
CCCTCCGGGAAGACATGGTCCGCCGGCAGTGGTACAGCCCGGGGAGACTG
CTGGCCTTCGTGGCCCTACCCGTGGTGGGACCCTGCCTGTACCTGCTCCT
ACGACCGACGCTAAAAGGCGAGGCAGGAGCGGAAGGTTGACTTTGGGGGG
GGGAAAGGGCGGGATTGAGAACGCAAAAATCATGTTTTGCCG
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protein sequence of rna3388

>rna3388-protein ID=rna3388-protein|Name=rna3388|organism=Nannochloropsis gaditana|type=polypeptide|length=198bp
MITRTLLSSLVISRLHLLKDLRNSALCPCYSRTRRELRRVNLALSRLELR
EGIGRSRLKQINQKSTSGLSVLLEFNVNLSEQEICVVTMSTGGKMGKIVL
GAAEVAYLKEASRRIFGHLPQLNTGKTGNKILRKPLIGDKLVTYFPATIN
RIAHREWFGYKTDMDIWRENRLLRMHARGNPPTKKGEGKRAQQAKKKK
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mRNA from alignment at CM002461.1:287823..288906+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3388 ID=rna3388|Name=rna3388|organism=Nannochloropsis gaditana|type=mRNA|length=1084bp|location=Sequence derived from alignment at CM002461.1:287823..288906+ (Nannochloropsis gaditana)
CTTTCCCCATCGAACCTCTTGGTTCCCTCCTAGAGTCTAGGAGCGTCGCT
CTCTCGCCCCCGTGAGTGCACCCACACCCATGATTACTAGGACGCTCTTG
TCTTCCCTCGTGATATCCCGGCTTCATCTTTTGAAGGATTTGAGAAACTC
AGCGCTTTGTCCCTGTTACTCTCGCACACGCAGGGAATTGAGACGTGTGA
ACTTGGCACTATCACGCCtggagctgagggagggcattgGGAGGAGTCGC
CTCAAACAAATCAACCAAAAATCAACCAGTGGCCTGTCTGTGCTCCTTGA
ATTCAACGTGAATCTATCTGAGCAGGAAATTTGTGTGGTAACCATGAGCA
CTGGTGGCAAAATGGGTAAAATTGTTTTGGGGGCGGCCGAGGTGGCTTAC
TTGAAAGAGGCGTCGCGTCGGATTTTCGGACACCTCCCACAATTAAATAC
TGGCAAAACGGGGAACAAAATCCTCCGAAAACCCCTCATCGGCGACAAAT
TGGTCACTTACTTCCCGGCAACGATCAACAGAATCGCACACAGGGAGTGG
TTCGGTTACAAGACTGATATGGACATATGGCGCGAGAACCGTCTTTTGCG
GATGCACGCGCGTGGGAATCCTCCAacgaaaaaaggagaaggaaagcgcg
CTCAGCaggcaaagaaaaagaagtaACACCAGTATTGTGACAATTGAAAA
GTTGACACGGTGCATTGTCCGAAATTGGTTACCATTGATGCGATTTGAGC
CCTCTACCCAGCGATCTCGGATGAAATAGACGCAAAAGGAGGCTCTTCTC
TCTGCGCAAATACTGTCTTCCACCGGATGTTACTCCTTGTTTCTCCGGCT
CGATGCTGTCTTTGAGATAGAAGTTCACGACAGCAAAATGCCCCCTTCTG
TCTGTAAGGTGTATTTGAGCCTGTCTTGAGACGTATCCGTTTATCCCTCC
CTGTGGGTGATtcggctttccccccctcgtcgtgACACATGCAGAAAAGC
TTGGCCACCAACATGTCTAAGCACGCTGCGTTTTTATCCGCGCTCACCAA
CGGTTACTCGTTtgatccttcctcctcaaagaGC
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Coding sequence (CDS) from alignment at CM002461.1:287823..288906+

>rna3388 ID=rna3388|Name=rna3388|organism=Nannochloropsis gaditana|type=CDS|length=597bp|location=Sequence derived from alignment at CM002461.1:287823..288906+ (Nannochloropsis gaditana)
ATGATTACTAGGACGCTCTTGTCTTCCCTCGTGATATCCCGGCTTCATCT
TTTGAAGGATTTGAGAAACTCAGCGCTTTGTCCCTGTTACTCTCGCACAC
GCAGGGAATTGAGACGTGTGAACTTGGCACTATCACGCCtggagctgagg
gagggcattgGGAGGAGTCGCCTCAAACAAATCAACCAAAAATCAACCAG
TGGCCTGTCTGTGCTCCTTGAATTCAACGTGAATCTATCTGAGCAGGAAA
TTTGTGTGGTAACCATGAGCACTGGTGGCAAAATGGGTAAAATTGTTTTG
GGGGCGGCCGAGGTGGCTTACTTGAAAGAGGCGTCGCGTCGGATTTTCGG
ACACCTCCCACAATTAAATACTGGCAAAACGGGGAACAAAATCCTCCGAA
AACCCCTCATCGGCGACAAATTGGTCACTTACTTCCCGGCAACGATCAAC
AGAATCGCACACAGGGAGTGGTTCGGTTACAAGACTGATATGGACATATG
GCGCGAGAACCGTCTTTTGCGGATGCACGCGCGTGGGAATCCTCCAacga
aaaaaggagaaggaaagcgcgCTCAGCaggcaaagaaaaagaagtaA
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Synonyms
Publications