EWM27276.1, cds3379 (CDS) Nannochloropsis gaditana

Overview
NameEWM27276.1
Unique Namecds3379
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:287902..288498 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27276.1
ProductRibosomal protein S27/S33, mitochondrial
Orig transcript idgnl|cribi|Naga_100080g5.2840.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:287902..288498 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: INTERPRO
TermDefinition
IPR013219Ribosomal_S27/S33_mit
Homology
BLAST of EWM27276.1 vs. NCBI_GenBank
Match: gi|585109458|gb|EWM27276.1| (Ribosomal protein S27/S33, mitochondrial [Nannochloropsis gaditana])

HSP 1 Score: 404.06 bits (1037), Expect = 1.256e-142
Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 0
Query:    1 MITRTLLSSLVISRLHLLKDLRNSALCPCYSRTRRELRRVNLALSRLELREGIGRSRLKQINQKSTSGLSVLLEFNVNLSEQEICVVTMSTGGKMGKIVLGAAEVAYLKEASRRIFGHLPQLNTGKTGNKILRKPLIGDKLVTYFPATINRIAHREWFGYKTDMDIWRENRLLRMHARGNPPTKKGEGKRAQQAKKKK 198
            MITRTLLSSLVISRLHLLKDLRNSALCPCYSRTRRELRRVNLALSRLELREGIGRSRLKQINQKSTSGLSVLLEFNVNLSEQEICVVTMSTGGKMGKIVLGAAEVAYLKEASRRIFGHLPQLNTGKTGNKILRKPLIGDKLVTYFPATINRIAHREWFGYKTDMDIWRENRLLRMHARGNPPTKKGEGKRAQQAKKKK
Sbjct:    1 MITRTLLSSLVISRLHLLKDLRNSALCPCYSRTRRELRRVNLALSRLELREGIGRSRLKQINQKSTSGLSVLLEFNVNLSEQEICVVTMSTGGKMGKIVLGAAEVAYLKEASRRIFGHLPQLNTGKTGNKILRKPLIGDKLVTYFPATINRIAHREWFGYKTDMDIWRENRLLRMHARGNPPTKKGEGKRAQQAKKKK 198          
BLAST of EWM27276.1 vs. NCBI_GenBank
Match: gi|1024048762|gb|KZV49444.1| (Mitochondrial isoform 1 [Dorcoceras hygrometricum])

HSP 1 Score: 61.6178 bits (148), Expect = 3.821e-9
Identity = 44/115 (38.26%), Postives = 63/115 (54.78%), Query Frame = 0
Query:   89 MSTGGKMG--KIVLGAAEVAYLKEASRRIFGHLPQLNTGKTGNKILRKPLIGDKLVTYFPATINR-----IAHREWFGYKTDMDIWRENRLLRMHARGNPPTKKGEGKRAQQAKK 196
            MS GG +G  K VL  A +  + EA  RIFGH+      ++ +KILRK LIG+K+  ++P  I +     IA +E           R N+L  +  RG  P KKG+GKRA+++ K
Sbjct:    2 MSCGGSLGSLKNVLADAALKGVTEARARIFGHILNPTGQRSPHKILRKKLIGEKVAAWYPYDIKKDDPLIIARQEQE---------RLNKLEMLKRRGKGPPKKGQGKRAKKSSK 107          
BLAST of EWM27276.1 vs. NCBI_GenBank
Match: gi|308806880|ref|XP_003080751.1| (unnamed protein product [Ostreococcus tauri] >gi|116059212|emb|CAL54919.1| Ribosomal protein S27/S33, mitochondrial [Ostreococcus tauri] >gi|1199291846|gb|OUS46936.1| mitochondrial ribosomal subunit S27-domain-containing protein [Ostreococcus tauri])

HSP 1 Score: 60.077 bits (144), Expect = 1.045e-8
Identity = 36/82 (43.90%), Postives = 50/82 (60.98%), Query Frame = 0
Query:  115 IFGHLPQLNTG-KTGNKILRKPLIGDKLVTYFPATINRIAHREWFGYKTDMDIWRENRLLRMHARGNPPTKKGEGKRAQQAK 195
            IFGH   L  G  +G KILRKPLIG++LV ++P+++ ++       +    D  R+ +L RM  RG  P KKGEGKRA + K
Sbjct:   19 IFGH--HLGNGLPSGRKILRKPLIGERLVNWYPSSMAKMDPL----FADPGDARRKVKLERMKRRGKGPPKKGEGKRASKGK 94          
BLAST of EWM27276.1 vs. NCBI_GenBank
Match: gi|545356558|ref|XP_005643976.1| (hypothetical protein COCSUDRAFT_54686 [Coccomyxa subellipsoidea C-169] >gi|384245940|gb|EIE19432.1| hypothetical protein COCSUDRAFT_54686 [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 60.077 bits (144), Expect = 2.288e-8
Identity = 41/98 (41.84%), Postives = 61/98 (62.24%), Query Frame = 0
Query:  102 AAEVAYLKEASRRIFG-HLPQLNTGKTGNKILRKPLIGDKLVTYFPATINRIAHREWFGYKTDMDIWREN-RLLRMHARGNPPTKKGEGKRAQQAKKK 197
            A+    L+E   RIFG H+   N  ++G K+LRK LIG+K+ +Y+P  I++I     F    DMD+ R+  +L ++  RG  P KKG+GKRA +AKK+
Sbjct:   36 ASTQESLEEIRARIFGNHIG--NNLRSGRKLLRKRLIGEKVASYYPEPISKID--PMF---VDMDLERKKMKLDKLKRRGKAPPKKGQGKRATKAKKR 126          
BLAST of EWM27276.1 vs. NCBI_GenBank
Match: gi|747066901|ref|XP_011080148.1| (uncharacterized protein LOC105163487 [Sesamum indicum])

HSP 1 Score: 59.6918 bits (143), Expect = 2.475e-8
Identity = 41/103 (39.81%), Postives = 56/103 (54.37%), Query Frame = 0
Query:   97 KIVLGAAEVAYLKEASRRIFGHLPQLNTGKTGNKILRKPLIGDKLVTYFPATINR-----IAHREWFGYKTDMDIWRENRLLRMHARGNPPTKKGEGKRAQQA 194
            K VL  A    + EA  RIFGH+      ++ +KILRK LIGDK+  ++P  IN+     +A RE           R NRL  +  RG  P KKG+GKRA+++
Sbjct:   11 KNVLAEAAKRGVTEARARIFGHVLNPTGQRSPHKILRKKLIGDKVAAWYPYDINKDDPLVMARREQE---------RLNRLEMLKRRGKGPPKKGQGKRAKKS 104          
BLAST of EWM27276.1 vs. NCBI_GenBank
Match: gi|527200603|gb|EPS67987.1| (hypothetical protein M569_06784 [Genlisea aurea])

HSP 1 Score: 59.3066 bits (142), Expect = 2.788e-8
Identity = 41/103 (39.81%), Postives = 57/103 (55.34%), Query Frame = 0
Query:   97 KIVLGAAEVAYLKEASRRIFGHLPQLNTGKTGNKILRKPLIGDKLVTYFPATINR-----IAHREWFGYKTDMDIWRENRLLRMHARGNPPTKKGEGKRAQQA 194
            K VL  A +  + EA  RIFGH+       + +KILRK LIG+K+ +++P  IN+     IA +E           R NRL  +  RG  P KKG+GKRA++A
Sbjct:    5 KKVLAKAAMDGVTEARARIFGHILNPEGTPSPHKILRKKLIGEKVASWYPYDINKNDPVVIARKEQE---------RLNRLEMLKRRGKGPPKKGQGKRAKKA 98          
BLAST of EWM27276.1 vs. NCBI_GenBank
Match: gi|848849356|ref|XP_012830464.1| (PREDICTED: uncharacterized protein LOC105951552 [Erythranthe guttata] >gi|604348211|gb|EYU46366.1| hypothetical protein MIMGU_mgv1a016742mg [Erythranthe guttata])

HSP 1 Score: 58.9214 bits (141), Expect = 5.052e-8
Identity = 39/103 (37.86%), Postives = 56/103 (54.37%), Query Frame = 0
Query:   97 KIVLGAAEVAYLKEASRRIFGHLPQLNTGKTGNKILRKPLIGDKLVTYFPATINR-----IAHREWFGYKTDMDIWRENRLLRMHARGNPPTKKGEGKRAQQA 194
            K VL  A    + EA  RIFGH+      ++ +KILRK LIGDK+  ++P  IN+     +A +E           R N+L  +  RG  P KKG+GKRA+++
Sbjct:   12 KNVLAEAATKGVTEARARIFGHVLNPTGQRSPHKILRKKLIGDKVAAWYPYDINKDDPLVLARKEQE---------RLNKLEMLKRRGKGPPKKGQGKRAKKS 105          
BLAST of EWM27276.1 vs. NCBI_GenBank
Match: gi|1130822310|dbj|GAV91170.1| (MRP-S33 domain-containing protein [Cephalotus follicularis])

HSP 1 Score: 56.225 bits (134), Expect = 5.195e-7
Identity = 40/122 (32.79%), Postives = 66/122 (54.10%), Query Frame = 0
Query:   76 NVNLSEQEICVVTMSTGGKMGKIVLGAAEVAYLKEASRRIFGHLPQLNTGKTGNKILRKPLIGDKLVTYFPATINR----IAHREWFGYKTDMDIWRENRLLRMHARGNPPTKKGEGKRAQQ 193
             +N S++   ++   +GG + K +L  A  A + EA  RIFGH+      K+ +KILRK LIG+K+ +++P  I +    +  RE        +  R ++L  +  RG  P KKG+GKR ++
Sbjct:    4 EINGSKRLQQIIEKMSGGSL-KRILATAVTAGVSEARARIFGHVLNPTGQKSPHKILRKKLIGEKVASWYPYDIKKDDPLVVARE--------EQERLSKLEMLKRRGKGPPKKGQGKRVKR 116          
BLAST of EWM27276.1 vs. NCBI_GenBank
Match: gi|1023183942|ref|XP_016291015.1| (hypothetical protein PSEUBRA_SCAF3g03550 [Kalmanozyma brasiliensis GHG001] >gi|557996533|gb|EST06026.1| hypothetical protein PSEUBRA_SCAF3g03550 [Kalmanozyma brasiliensis GHG001])

HSP 1 Score: 55.8398 bits (133), Expect = 6.038e-7
Identity = 39/108 (36.11%), Postives = 57/108 (52.78%), Query Frame = 0
Query:   97 KIVLGAAEVAYLKEASRRIFGHLPQLNTGKTGNKILRKPLIGDKLVTYFPATIN-----RIAHREWFGYKTDM-DIWRENRLLRMHARGNPPTKKGEGKRAQQAKKKK 198
            K+   A+ V+ LK    +IFG        +TG+K+LR+ L G  ++TY+P T+N     ++A     G   D+ +I RE  + R    G  P KKGEG+RA    KKK
Sbjct:    2 KVAPSASAVSSLKALQAKIFGTTYNPTHARTGSKVLRQRLQGPSMLTYYPPTVNFRSIEKLA--PSLGRLQDIREIQREKDVERKKMLGKGPPKKGEGRRAAMKGKKK 107          
The following BLAST results are available for this feature:
BLAST of EWM27276.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 9
Match NameE-valueIdentityDescription
gi|585109458|gb|EWM27276.1|1.256e-142100.00Ribosomal protein S27/S33, mitochondrial [Nannochl... [more]
gi|1024048762|gb|KZV49444.1|3.821e-938.26Mitochondrial isoform 1 [Dorcoceras hygrometricum][more]
gi|308806880|ref|XP_003080751.1|1.045e-843.90unnamed protein product [Ostreococcus tauri] >gi|1... [more]
gi|545356558|ref|XP_005643976.1|2.288e-841.84hypothetical protein COCSUDRAFT_54686 [Coccomyxa s... [more]
gi|747066901|ref|XP_011080148.1|2.475e-839.81uncharacterized protein LOC105163487 [Sesamum indi... [more]
gi|527200603|gb|EPS67987.1|2.788e-839.81hypothetical protein M569_06784 [Genlisea aurea][more]
gi|848849356|ref|XP_012830464.1|5.052e-837.86PREDICTED: uncharacterized protein LOC105951552 [E... [more]
gi|1130822310|dbj|GAV91170.1|5.195e-732.79MRP-S33 domain-containing protein [Cephalotus foll... [more]
gi|1023183942|ref|XP_016291015.1|6.038e-736.11hypothetical protein PSEUBRA_SCAF3g03550 [Kalmanoz... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3388rna3388Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications