EWM27276.1, cds3379 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27276.1 vs. NCBI_GenBank
Match: gi|585109458|gb|EWM27276.1| (Ribosomal protein S27/S33, mitochondrial [Nannochloropsis gaditana]) HSP 1 Score: 404.06 bits (1037), Expect = 1.256e-142 Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 0
Query: 1 MITRTLLSSLVISRLHLLKDLRNSALCPCYSRTRRELRRVNLALSRLELREGIGRSRLKQINQKSTSGLSVLLEFNVNLSEQEICVVTMSTGGKMGKIVLGAAEVAYLKEASRRIFGHLPQLNTGKTGNKILRKPLIGDKLVTYFPATINRIAHREWFGYKTDMDIWRENRLLRMHARGNPPTKKGEGKRAQQAKKKK 198
MITRTLLSSLVISRLHLLKDLRNSALCPCYSRTRRELRRVNLALSRLELREGIGRSRLKQINQKSTSGLSVLLEFNVNLSEQEICVVTMSTGGKMGKIVLGAAEVAYLKEASRRIFGHLPQLNTGKTGNKILRKPLIGDKLVTYFPATINRIAHREWFGYKTDMDIWRENRLLRMHARGNPPTKKGEGKRAQQAKKKK
Sbjct: 1 MITRTLLSSLVISRLHLLKDLRNSALCPCYSRTRRELRRVNLALSRLELREGIGRSRLKQINQKSTSGLSVLLEFNVNLSEQEICVVTMSTGGKMGKIVLGAAEVAYLKEASRRIFGHLPQLNTGKTGNKILRKPLIGDKLVTYFPATINRIAHREWFGYKTDMDIWRENRLLRMHARGNPPTKKGEGKRAQQAKKKK 198
BLAST of EWM27276.1 vs. NCBI_GenBank
Match: gi|1024048762|gb|KZV49444.1| (Mitochondrial isoform 1 [Dorcoceras hygrometricum]) HSP 1 Score: 61.6178 bits (148), Expect = 3.821e-9 Identity = 44/115 (38.26%), Postives = 63/115 (54.78%), Query Frame = 0
Query: 89 MSTGGKMG--KIVLGAAEVAYLKEASRRIFGHLPQLNTGKTGNKILRKPLIGDKLVTYFPATINR-----IAHREWFGYKTDMDIWRENRLLRMHARGNPPTKKGEGKRAQQAKK 196
MS GG +G K VL A + + EA RIFGH+ ++ +KILRK LIG+K+ ++P I + IA +E R N+L + RG P KKG+GKRA+++ K
Sbjct: 2 MSCGGSLGSLKNVLADAALKGVTEARARIFGHILNPTGQRSPHKILRKKLIGEKVAAWYPYDIKKDDPLIIARQEQE---------RLNKLEMLKRRGKGPPKKGQGKRAKKSSK 107
BLAST of EWM27276.1 vs. NCBI_GenBank
Match: gi|308806880|ref|XP_003080751.1| (unnamed protein product [Ostreococcus tauri] >gi|116059212|emb|CAL54919.1| Ribosomal protein S27/S33, mitochondrial [Ostreococcus tauri] >gi|1199291846|gb|OUS46936.1| mitochondrial ribosomal subunit S27-domain-containing protein [Ostreococcus tauri]) HSP 1 Score: 60.077 bits (144), Expect = 1.045e-8 Identity = 36/82 (43.90%), Postives = 50/82 (60.98%), Query Frame = 0
Query: 115 IFGHLPQLNTG-KTGNKILRKPLIGDKLVTYFPATINRIAHREWFGYKTDMDIWRENRLLRMHARGNPPTKKGEGKRAQQAK 195
IFGH L G +G KILRKPLIG++LV ++P+++ ++ + D R+ +L RM RG P KKGEGKRA + K
Sbjct: 19 IFGH--HLGNGLPSGRKILRKPLIGERLVNWYPSSMAKMDPL----FADPGDARRKVKLERMKRRGKGPPKKGEGKRASKGK 94
BLAST of EWM27276.1 vs. NCBI_GenBank
Match: gi|545356558|ref|XP_005643976.1| (hypothetical protein COCSUDRAFT_54686 [Coccomyxa subellipsoidea C-169] >gi|384245940|gb|EIE19432.1| hypothetical protein COCSUDRAFT_54686 [Coccomyxa subellipsoidea C-169]) HSP 1 Score: 60.077 bits (144), Expect = 2.288e-8 Identity = 41/98 (41.84%), Postives = 61/98 (62.24%), Query Frame = 0
Query: 102 AAEVAYLKEASRRIFG-HLPQLNTGKTGNKILRKPLIGDKLVTYFPATINRIAHREWFGYKTDMDIWREN-RLLRMHARGNPPTKKGEGKRAQQAKKK 197
A+ L+E RIFG H+ N ++G K+LRK LIG+K+ +Y+P I++I F DMD+ R+ +L ++ RG P KKG+GKRA +AKK+
Sbjct: 36 ASTQESLEEIRARIFGNHIG--NNLRSGRKLLRKRLIGEKVASYYPEPISKID--PMF---VDMDLERKKMKLDKLKRRGKAPPKKGQGKRATKAKKR 126
BLAST of EWM27276.1 vs. NCBI_GenBank
Match: gi|747066901|ref|XP_011080148.1| (uncharacterized protein LOC105163487 [Sesamum indicum]) HSP 1 Score: 59.6918 bits (143), Expect = 2.475e-8 Identity = 41/103 (39.81%), Postives = 56/103 (54.37%), Query Frame = 0
Query: 97 KIVLGAAEVAYLKEASRRIFGHLPQLNTGKTGNKILRKPLIGDKLVTYFPATINR-----IAHREWFGYKTDMDIWRENRLLRMHARGNPPTKKGEGKRAQQA 194
K VL A + EA RIFGH+ ++ +KILRK LIGDK+ ++P IN+ +A RE R NRL + RG P KKG+GKRA+++
Sbjct: 11 KNVLAEAAKRGVTEARARIFGHVLNPTGQRSPHKILRKKLIGDKVAAWYPYDINKDDPLVMARREQE---------RLNRLEMLKRRGKGPPKKGQGKRAKKS 104
BLAST of EWM27276.1 vs. NCBI_GenBank
Match: gi|527200603|gb|EPS67987.1| (hypothetical protein M569_06784 [Genlisea aurea]) HSP 1 Score: 59.3066 bits (142), Expect = 2.788e-8 Identity = 41/103 (39.81%), Postives = 57/103 (55.34%), Query Frame = 0
Query: 97 KIVLGAAEVAYLKEASRRIFGHLPQLNTGKTGNKILRKPLIGDKLVTYFPATINR-----IAHREWFGYKTDMDIWRENRLLRMHARGNPPTKKGEGKRAQQA 194
K VL A + + EA RIFGH+ + +KILRK LIG+K+ +++P IN+ IA +E R NRL + RG P KKG+GKRA++A
Sbjct: 5 KKVLAKAAMDGVTEARARIFGHILNPEGTPSPHKILRKKLIGEKVASWYPYDINKNDPVVIARKEQE---------RLNRLEMLKRRGKGPPKKGQGKRAKKA 98
BLAST of EWM27276.1 vs. NCBI_GenBank
Match: gi|848849356|ref|XP_012830464.1| (PREDICTED: uncharacterized protein LOC105951552 [Erythranthe guttata] >gi|604348211|gb|EYU46366.1| hypothetical protein MIMGU_mgv1a016742mg [Erythranthe guttata]) HSP 1 Score: 58.9214 bits (141), Expect = 5.052e-8 Identity = 39/103 (37.86%), Postives = 56/103 (54.37%), Query Frame = 0
Query: 97 KIVLGAAEVAYLKEASRRIFGHLPQLNTGKTGNKILRKPLIGDKLVTYFPATINR-----IAHREWFGYKTDMDIWRENRLLRMHARGNPPTKKGEGKRAQQA 194
K VL A + EA RIFGH+ ++ +KILRK LIGDK+ ++P IN+ +A +E R N+L + RG P KKG+GKRA+++
Sbjct: 12 KNVLAEAATKGVTEARARIFGHVLNPTGQRSPHKILRKKLIGDKVAAWYPYDINKDDPLVLARKEQE---------RLNKLEMLKRRGKGPPKKGQGKRAKKS 105
BLAST of EWM27276.1 vs. NCBI_GenBank
Match: gi|1130822310|dbj|GAV91170.1| (MRP-S33 domain-containing protein [Cephalotus follicularis]) HSP 1 Score: 56.225 bits (134), Expect = 5.195e-7 Identity = 40/122 (32.79%), Postives = 66/122 (54.10%), Query Frame = 0
Query: 76 NVNLSEQEICVVTMSTGGKMGKIVLGAAEVAYLKEASRRIFGHLPQLNTGKTGNKILRKPLIGDKLVTYFPATINR----IAHREWFGYKTDMDIWRENRLLRMHARGNPPTKKGEGKRAQQ 193
+N S++ ++ +GG + K +L A A + EA RIFGH+ K+ +KILRK LIG+K+ +++P I + + RE + R ++L + RG P KKG+GKR ++
Sbjct: 4 EINGSKRLQQIIEKMSGGSL-KRILATAVTAGVSEARARIFGHVLNPTGQKSPHKILRKKLIGEKVASWYPYDIKKDDPLVVARE--------EQERLSKLEMLKRRGKGPPKKGQGKRVKR 116
BLAST of EWM27276.1 vs. NCBI_GenBank
Match: gi|1023183942|ref|XP_016291015.1| (hypothetical protein PSEUBRA_SCAF3g03550 [Kalmanozyma brasiliensis GHG001] >gi|557996533|gb|EST06026.1| hypothetical protein PSEUBRA_SCAF3g03550 [Kalmanozyma brasiliensis GHG001]) HSP 1 Score: 55.8398 bits (133), Expect = 6.038e-7 Identity = 39/108 (36.11%), Postives = 57/108 (52.78%), Query Frame = 0
Query: 97 KIVLGAAEVAYLKEASRRIFGHLPQLNTGKTGNKILRKPLIGDKLVTYFPATIN-----RIAHREWFGYKTDM-DIWRENRLLRMHARGNPPTKKGEGKRAQQAKKKK 198
K+ A+ V+ LK +IFG +TG+K+LR+ L G ++TY+P T+N ++A G D+ +I RE + R G P KKGEG+RA KKK
Sbjct: 2 KVAPSASAVSSLKALQAKIFGTTYNPTHARTGSKVLRQRLQGPSMLTYYPPTVNFRSIEKLA--PSLGRLQDIREIQREKDVERKKMLGKGPPKKGEGRRAAMKGKKK 107 The following BLAST results are available for this feature:
BLAST of EWM27276.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 9
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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