rna3387, rna3387 (mRNA) Nannochloropsis gaditana

Overview
Namerna3387
Unique Namerna3387
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1370
Alignment locationCM002461.1:286351..287592 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100080g3.2851.mrna
Orig protein idgnl|cribi|Naga_100080g3.2851
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:286351..287592 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100080g3gene3262Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27287.1cds3378Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3387rna3387-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3387 ID=rna3387|Name=rna3387|organism=Nannochloropsis gaditana|type=mRNA|length=1370bp
TGTGCAGGCTGTCAAAGAAAAGTCTCTATACAACTCATGTTTGGCACGGG
CAGCGGGCAGGGTGGCAAAGATGTCGCGGTCGCGAAGGCTCAGCAGACGA
AGGTGCAACCATGGGTGGAGAAATATCGACCTCAAGGCGTGGACGACATT
TCATACCAAGACGAAGTGGTTAAAACCCTTAAAAATGCGATTCAAACCGG
TACTTTGCCACACCTGTTGTTCTACGGTCCTCCGGGGACGGGCAAAACCT
CGACGATCCTGGCAGTGGCACGCTCTTTGTTTGGCCCTGAATACCGATCA
CGCATACTGGAACTGAATGCCTCGGACGAACGAGGGATCAAGGTTGTGCG
AGAGAAAGTCAAGCAGTTCGCTCAGTTCACGGTGACCGGCTTGGAGAAAA
CAGCTGGCTACCCGTGCCCCCCCTTCAAGATCATCATCCTGGACGAGGCC
GACACCATGACTACCGAGGCCCAGGCGGCCTTGCGACGGACGATGGAGAC
GTACTCAAAAATCACTCGCTTCTGCCTGGTATGCAACTACGTGACGCGTA
TCATCGAGCCCCTGGCCTCCCGATGCGCCAAATTCCGTTTCCGTCCCCTG
TCTCGGGAGGTCATGGAGGCCCGGCTGCGTGCCATTGGGGCCGCAGAAGG
CGCCTCGGTGACACAGGAAATGATGGATGCCATATTAACGGTCGCCGACG
GGTGCGTGCTGACTTTCTTTCCCTCTCCCTCCTTCCCTCCCTGCCTGCCT
CCCTCACCCTCTTCCCTCTCTGGTGGATTCCCCTTGGTTCCTCCCCGTCG
GTTCATTTCTTGACAGAGACATGCGCAAGGCCGTGACGACGCTGCAAAGC
GCGCATCAATTCTACGGGGGGAGCTCCTCCATTACGCCGGACGCGGTGCG
GGAGATGAGCGGGGGGGTGCCCGACGGCCTGGTTCAGAGTCTCTGGGAAG
CAATCAGCACGCAGTCCTTCGACAATTTGAAGGCGCAATGTGACGAGGTG
GAAATGGCTGGCTACCCCACCATGGCCGTGCTGCACCGCCTCTTCGACCT
GGTGGTGGCGGAGGAAGGGGTGGAGGACGCGAAGAAGGCGGTGGTGATGG
CGGGACTGGCGCGGGCAGAGAAGCTGATCATCGATGGGGCCAATGAGAGC
TTGCAGTTGTTGGATATTTGTGCATTGATGATGCGGACATTTTTGGGTAA
AAACAAAAGCGCAGGAAGCGGCGTGTGCGTGAGCACACCCATGGTGCTTT
AGGAGGGAGGGAGGGAGGGCGGGAGGTGGGAGGCAGGGGTGGAAGGAAGG
AGAAGGAGATGCAAGCTGATTGGCAGGCGGTTTAAAAGCACAAAAGAGAC
GTACAACCAGGCAATGATAG
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protein sequence of rna3387

>rna3387-protein ID=rna3387-protein|Name=rna3387|organism=Nannochloropsis gaditana|type=polypeptide|length=166bp
MPFVYTSLLLSGSRDQIPPAWPFTLASFALGFFALGPYLALRRYRPFPDT
AHASPWLTRVMESKLPALLAFLASLYLAWLIVDGLVSAGGREAYLSLFYS
QTLPHVSSLDLGLLSLFVVDPLREDMVRRQWYSPGRLLAFVALPVVGPCL
YLLLRPTLKGEAGAEG
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mRNA from alignment at CM002461.1:286351..287592-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3387 ID=rna3387|Name=rna3387|organism=Nannochloropsis gaditana|type=mRNA|length=1242bp|location=Sequence derived from alignment at CM002461.1:286351..287592- (Nannochloropsis gaditana)
GGCCTCAAATGAAAGAAAAACCAATGTCCGTGGCGCTTCTTGCCACGTTG
CTGATTTCTGTGCCTCTCACAGCTAGTTTCCAGCCTCCCTTTGCTGCACG
TCCGCCCCCCGTCCCCTCATTCCACAGCCCCGTTAGTACGACCCGCGCTT
TACTAGGTAGACGACTCCCATTACACCCGACAAGTGTGAGGCACGCACGT
GAGAAATCTAAGGAGCTCTCCAATACTGACGGCAACGATGGTAGTTCTAC
CCTGGAGGAGCGAGGTCTCCGGTCCTACGTCACTGGCTTAGCCTGGTTAG
GTTTCGTGGGCTACGCTTTCTTGTGTGCGCCGGGAATGGACGAGGCGGCG
AAAGTTTTGGATGCCCAGCTTCTCAAGGTAAGGAAAAACATGTAGTTGTC
GTGGGTTGTCGCACACGAGGTGCTCCAAATGGAGCCTGGGCCTTGTCTCA
GTCCCAGTGTGGCTGTTACAATCTCTCAGAACAGCTAAGGAATCGGCTGG
AATGGCAGCACGTGGCCCCCTCCATTGCGTTCCCGTCCCAGTCAGACGTT
CATCAGGTGCCCCCATTCCGTCTGAGCATTGCCGAAGCCTTTCATCCCCC
TTTTCAAACACTACCAGGACATCATCGCAGATCCTTTCTCCCCGGCAGTG
CCCAGCATCTTCGTCGCCATCTTCAACGCCCTAGGCCTCATGCCATTCGT
ATACACCTCCCTCCTCCTCTCGGGCTCTCGCGATCAAATCCCGCCCGCCT
GGCCCTTTACCCTCGCTTCCTTCGCCCTGGGGTTCTTTGCCCTGGGCCCC
TACCTCGCCCTCCGCCGCTACCGACCCTTTCCCGACACCGCCCATGCCTC
CCCGTGGCTGACGCGCGTCATGGAGAGCAAACTCCCTGCCCTCCTCGCCT
TCCTTGCCTCCCTGTACCTGGCCTGGCTGATCGTGGACGGCCTCGTAAGC
GCGGGCGGGCGGGAAGCTTACCTCTCTCTCTTCTACTCCCAGACACTGCC
GCACGTCTCCTCGCTGGACCTGGGCCTCCTCTCCCTCTTTGTCGTCGACC
CCCTCCGGGAAGACATGGTCCGCCGGCAGTGGTACAGCCCGGGGAGACTG
CTGGCCTTCGTGGCCCTACCCGTGGTGGGACCCTGCCTGTACCTGCTCCT
ACGACCGACGCTAAAAGGCGAGGCAGGAGCGGAAGGTTGACTTTGGGGGG
GGGAAAGGGCGGGATTGAGAACGCAAAAATCATGTTTTGCCG
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Coding sequence (CDS) from alignment at CM002461.1:286351..287592-

>rna3387 ID=rna3387|Name=rna3387|organism=Nannochloropsis gaditana|type=CDS|length=501bp|location=Sequence derived from alignment at CM002461.1:286351..287592- (Nannochloropsis gaditana)
ATGCCATTCGTATACACCTCCCTCCTCCTCTCGGGCTCTCGCGATCAAAT
CCCGCCCGCCTGGCCCTTTACCCTCGCTTCCTTCGCCCTGGGGTTCTTTG
CCCTGGGCCCCTACCTCGCCCTCCGCCGCTACCGACCCTTTCCCGACACC
GCCCATGCCTCCCCGTGGCTGACGCGCGTCATGGAGAGCAAACTCCCTGC
CCTCCTCGCCTTCCTTGCCTCCCTGTACCTGGCCTGGCTGATCGTGGACG
GCCTCGTAAGCGCGGGCGGGCGGGAAGCTTACCTCTCTCTCTTCTACTCC
CAGACACTGCCGCACGTCTCCTCGCTGGACCTGGGCCTCCTCTCCCTCTT
TGTCGTCGACCCCCTCCGGGAAGACATGGTCCGCCGGCAGTGGTACAGCC
CGGGGAGACTGCTGGCCTTCGTGGCCCTACCCGTGGTGGGACCCTGCCTG
TACCTGCTCCTACGACCGACGCTAAAAGGCGAGGCAGGAGCGGAAGGTTG
A
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Synonyms
Publications