EWM27287.1, cds3378 (CDS) Nannochloropsis gaditana

Overview
NameEWM27287.1
Unique Namecds3378
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:286403..286903 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27287.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100080g3.2851.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:286403..286903 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM27287.1 vs. NCBI_GenBank
Match: gi|585109469|gb|EWM27287.1| (hypothetical protein Naga_100080g3 [Nannochloropsis gaditana])

HSP 1 Score: 323.939 bits (829), Expect = 6.701e-112
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0
Query:    1 MPFVYTSLLLSGSRDQIPPAWPFTLASFALGFFALGPYLALRRYRPFPDTAHASPWLTRVMESKLPALLAFLASLYLAWLIVDGLVSAGGREAYLSLFYSQTLPHVSSLDLGLLSLFVVDPLREDMVRRQWYSPGRLLAFVALPVVGPCLYLLLRPTLKGEAGAEG 166
            MPFVYTSLLLSGSRDQIPPAWPFTLASFALGFFALGPYLALRRYRPFPDTAHASPWLTRVMESKLPALLAFLASLYLAWLIVDGLVSAGGREAYLSLFYSQTLPHVSSLDLGLLSLFVVDPLREDMVRRQWYSPGRLLAFVALPVVGPCLYLLLRPTLKGEAGAEG
Sbjct:    1 MPFVYTSLLLSGSRDQIPPAWPFTLASFALGFFALGPYLALRRYRPFPDTAHASPWLTRVMESKLPALLAFLASLYLAWLIVDGLVSAGGREAYLSLFYSQTLPHVSSLDLGLLSLFVVDPLREDMVRRQWYSPGRLLAFVALPVVGPCLYLLLRPTLKGEAGAEG 166          
BLAST of EWM27287.1 vs. NCBI_GenBank
Match: gi|303288297|ref|XP_003063437.1| (predicted protein [Micromonas pusilla CCMP1545] >gi|226455269|gb|EEH52573.1| predicted protein [Micromonas pusilla CCMP1545])

HSP 1 Score: 106.686 bits (265), Expect = 5.192e-25
Identity = 80/172 (46.51%), Postives = 100/172 (58.14%), Query Frame = 0
Query:    1 MPFVYTSLLLSGSRDQ-IPPAWPFTLASFALGFFALGPYLALRRYRPFPDTA--HASP------WLTR-VMESKLPALLAFLASLYLAWLIV--DGLVSAGGREAYLSLFYSQT-LPHVSSLDLGLLSLFVVDPLREDMVRRQWYSPGRLLAFVALPVVGPCLYLLLRPTLK 159
            +P VY +LLL G+RDQ   P  P  +ASFALGFFALGPYL  RR R    TA   ++P      W TR V ESK     A   +L+  +LI      V A   E + +L+  Q+ L  VSS DL +LSL + D L EDM RR  +  G+ L F ALPV+GPCL+LL RP L+
Sbjct:  126 VPAVYAALLLPGARDQPRVPTLPPVVASFALGFFALGPYLITRRVRVVLSTAPRTSAPRRSELGWATRTVFESKP---FALFQTLFATFLIAYAASHVDAETLEGFATLWREQSALACVSSCDLLVLSLAMYDALSEDMKRRGVFERGKALGFCALPVLGPCLWLLTRPALE 294          
BLAST of EWM27287.1 vs. NCBI_GenBank
Match: gi|255088936|ref|XP_002506390.1| (predicted protein [Micromonas commoda] >gi|226521662|gb|ACO67648.1| predicted protein [Micromonas commoda])

HSP 1 Score: 99.3673 bits (246), Expect = 1.708e-22
Identity = 70/162 (43.21%), Postives = 93/162 (57.41%), Query Frame = 0
Query:    1 MPFVYTSLLLSGSRDQ--IPPAWPFTLASFALGFFALGPYLALRRYRPFPDTAHASPWLTR-VMESKLPALLAFLASLYLAWLIVDGLVSAGGREAYLSLFYSQT-LPHVSSLDLGLLSLFVVDPLREDMVRRQWYSPGRLLAFVALPVVGPCLYLLLRPTL 158
            +P VY +LLL G++DQ  IP   P   ASFALGFFALGPYL  R  R  P    +  W TR + ESK+ A      + +L         S    EA+++++  Q+ L  VSS DL +LS+ +   L EDM RR  Y   +  AF A+PV+GPC+YLL RP+L
Sbjct:   92 VPAVYAALLLPGAKDQPRIPTVPPLA-ASFALGFFALGPYLIAREPRTEPVPRSSLGWATRTIFESKVFAAFNAAFAAFLIAYGAANFTSDAA-EAFVAMWRDQSALACVSSCDLTVLSIAMYGALAEDMRRRGCYDGAKAAAFCAVPVLGPCVYLLTRPSL 251          
BLAST of EWM27287.1 vs. NCBI_GenBank
Match: gi|1199294173|gb|OUS49254.1| (hypothetical protein BE221DRAFT_188507 [Ostreococcus tauri])

HSP 1 Score: 99.7525 bits (247), Expect = 2.221e-22
Identity = 73/163 (44.79%), Postives = 96/163 (58.90%), Query Frame = 0
Query:    1 MPFVYTSLLLSGSRDQIPPAWPFTLASFALGFFALGPYLALR--RYRPFPDTAHASPWLTR-VMESKLPALLAFLASLYLAWLIVDGLVSAGGREAYLSLFYSQT-LPHVSSLDLGLLSLFVVDPLREDMVRRQWYSPGRLLAFVALPVVGPCLYLLLRPTLK 159
            +P  Y  LLL G++ Q  PA     ASFALGFFALGPYLA R  R  P P  +    W+TR V ESKL A+     + +LA+  V  L S      +++L   Q+ L  VS+ DL +LS  +VD + EDM RR    P   LA+ A+PVVGP L+L+LRP+L+
Sbjct:  118 VPATYACLLLPGAKGQKLPAALCVGASFALGFFALGPYLATRAPRTTPAPRRSELG-WVTRNVWESKLNAVALLGFASFLAYYGVSNL-SPENVSGFIALIREQSMLACVSTCDLVVLSACMVDAIGEDMKRRN-VDPSGALAYAAVPVVGPALWLVLRPSLE 277          
BLAST of EWM27287.1 vs. NCBI_GenBank
Match: gi|693500184|emb|CEF97429.1| (unnamed product [Ostreococcus tauri])

HSP 1 Score: 98.5969 bits (244), Expect = 4.741e-22
Identity = 72/163 (44.17%), Postives = 96/163 (58.90%), Query Frame = 0
Query:    1 MPFVYTSLLLSGSRDQIPPAWPFTLASFALGFFALGPYLALR--RYRPFPDTAHASPWLTR-VMESKLPALLAFLASLYLAWLIVDGLVSAGGREAYLSLFYSQT-LPHVSSLDLGLLSLFVVDPLREDMVRRQWYSPGRLLAFVALPVVGPCLYLLLRPTLK 159
            +P  Y  LLL G++ Q  PA     ASFALGFFA+GPYLA R  R  P P  +    W+TR V ESKL A+     + +LA+  V  L S      +++L   Q+ L  VS+ DL +LS  +VD + EDM RR    P   LA+ A+PVVGP L+L+LRP+L+
Sbjct:  118 VPATYACLLLPGAKGQKLPAALCVGASFALGFFAVGPYLATRAPRTTPAPRRSELG-WVTRNVWESKLNAVALLGFASFLAYYGVSNL-SPENVSGFIALIREQSMLACVSTCDLVVLSACMVDAIGEDMKRRN-VDPSGALAYAAVPVVGPALWLVLRPSLE 277          
BLAST of EWM27287.1 vs. NCBI_GenBank
Match: gi|922858142|gb|KOO26313.1| (hypothetical protein Ctob_005005 [Chrysochromulina sp. CCMP291])

HSP 1 Score: 97.0561 bits (240), Expect = 7.758e-22
Identity = 71/169 (42.01%), Postives = 91/169 (53.85%), Query Frame = 0
Query:    1 MPFVYTSLLLSGSRDQIPPAWPFTLASFALGFFALGPYLALRRYRPFPDTAHASPWLTR-VMESKLPALLAFLASLYLAWLIVDGLVSAGGREAYLSLFYSQTLPHVSSLDLGLLSLFVVDPLREDMVRRQWY-SPG---------RLLAFVALPVVGPCLYLLLRPTL 158
            +P +Y ++LL G++DQ P        SF  GF  LGPYL LR+ RP P +     ++ R V ESKL  +   L SL L   +            Y SLF    + +VSS DL +LSLF  +PLREDM RR WY +PG         RL AF A+PV+GP  Y+L RP L
Sbjct:   52 LPALYAAVLLPGAKDQRPAPPALIATSFFAGFGGLGPYLFLRQPRPQPISRAELGFIARTVTESKLFGVAMVLTSLGLGAKLATIPDFDAALATYWSLFDQFGIVNVSSFDLLVLSLFFFEPLREDMQRRGWYAAPGEDPSTEEIARLAAFCAVPVLGPAAYVLARPAL 220          
BLAST of EWM27287.1 vs. NCBI_GenBank
Match: gi|645247332|ref|XP_008229787.1| (PREDICTED: uncharacterized protein LOC103329132 [Prunus mume])

HSP 1 Score: 94.7449 bits (234), Expect = 4.066e-20
Identity = 66/167 (39.52%), Postives = 86/167 (51.50%), Query Frame = 0
Query:    2 PFVYTSLLLSGSRDQIP--PAWPFTLASFALGFFALGPYLALRRYRPFP-DTAHASPWLTRVMESKLPALLAFLASLYLAWLIVDGLVSAGGREAYLSLFYSQTLPHVSSLDLGLLSLFVVDPLREDMVRRQWYSPGRLLAFVAL-PVVGPCLYLLLRPTLKGEAGA 164
            P VY+ LLL   R      P WPF + SF  G +AL PY  L R  P P D +  + W    +ESKL A ++  A L +  +I  GL      + Y   F      HV SLD  LLS F    +  DM  R+W+  G  L FV+L P++GP LYL+LRP+L  EA +
Sbjct:  169 PLVYSMLLLPTGRSSKSKVPVWPFLILSFFGGAYALLPYFVLWRPPPPPVDESELTKWPLNFLESKLTAWISLAAGLGI--VIYAGLADGADWKEYYQYFKGSKFIHVMSLDFTLLSAFAPFWVYNDMTSRKWFDKGSWLLFVSLVPLIGPALYLVLRPSLSTEANS 333          
BLAST of EWM27287.1 vs. NCBI_GenBank
Match: gi|1139784249|gb|ONI18076.1| (hypothetical protein PRUPE_3G195700 [Prunus persica])

HSP 1 Score: 93.9745 bits (232), Expect = 7.219e-20
Identity = 66/167 (39.52%), Postives = 86/167 (51.50%), Query Frame = 0
Query:    2 PFVYTSLLLSGSRDQIP--PAWPFTLASFALGFFALGPYLALRRYRPFP-DTAHASPWLTRVMESKLPALLAFLASLYLAWLIVDGLVSAGGREAYLSLFYSQTLPHVSSLDLGLLSLFVVDPLREDMVRRQWYSPGRLLAFVAL-PVVGPCLYLLLRPTLKGEAGA 164
            P VY+ LLL   R      P WPF + SF  G +AL PY  L R  P P D +  + W    +ESKL A ++  A L +  +I  GL      + Y   F      HV SLD  LLS F    +  DM  R+W+  G  L FV+L P++GP LYL+LRP+L  EA +
Sbjct:  156 PLVYSMLLLPTGRSSKSKVPVWPFLILSFFGGAYALLPYFVLWRPPPPPVDESELTKWPLNFLESKLTAWISLAAGLGI--VIYAGLADGADWKEYYQYFNGSKFIHVMSLDFTLLSAFAPFWVYNDMTSRKWFDKGFWLLFVSLVPLIGPALYLVLRPSLSTEANS 320          
BLAST of EWM27287.1 vs. NCBI_GenBank
Match: gi|1162535978|ref|XP_020416343.1| (uncharacterized protein LOC18783660 [Prunus persica] >gi|1139784250|gb|ONI18077.1| hypothetical protein PRUPE_3G195700 [Prunus persica])

HSP 1 Score: 93.9745 bits (232), Expect = 7.309e-20
Identity = 66/167 (39.52%), Postives = 86/167 (51.50%), Query Frame = 0
Query:    2 PFVYTSLLLSGSRDQIP--PAWPFTLASFALGFFALGPYLALRRYRPFP-DTAHASPWLTRVMESKLPALLAFLASLYLAWLIVDGLVSAGGREAYLSLFYSQTLPHVSSLDLGLLSLFVVDPLREDMVRRQWYSPGRLLAFVAL-PVVGPCLYLLLRPTLKGEAGA 164
            P VY+ LLL   R      P WPF + SF  G +AL PY  L R  P P D +  + W    +ESKL A ++  A L +  +I  GL      + Y   F      HV SLD  LLS F    +  DM  R+W+  G  L FV+L P++GP LYL+LRP+L  EA +
Sbjct:  170 PLVYSMLLLPTGRSSKSKVPVWPFLILSFFGGAYALLPYFVLWRPPPPPVDESELTKWPLNFLESKLTAWISLAAGLGI--VIYAGLADGADWKEYYQYFNGSKFIHVMSLDFTLLSAFAPFWVYNDMTSRKWFDKGFWLLFVSLVPLIGPALYLVLRPSLSTEANS 334          
BLAST of EWM27287.1 vs. NCBI_GenBank
Match: gi|501726042|ref|WP_012626242.1| (hypothetical protein [Cyanothece sp. PCC 7425] >gi|219862805|gb|ACL43144.1| conserved hypothetical protein [Cyanothece sp. PCC 7425])

HSP 1 Score: 91.6633 bits (226), Expect = 8.551e-20
Identity = 63/157 (40.13%), Postives = 88/157 (56.05%), Query Frame = 0
Query:    2 PFVYTSLLLSGSRDQIPPAWPFTLASFALGFFALGPYLALRRYRPFPDTAHASPWLTRVMESKLPALLAFLASLYLAWLIVDGLVSAGGREAYLSLFYSQTLPHVSSLDLGLLSLFVVDPLREDMVRRQWYSPGRLLAFVALPVVGPCLYLLLRPTL 158
            P +Y+ LL    R Q  PAWPF LASF +G FAL PYLALR  +P P       WL +V++S+   L+  L ++    L+  GL+   G++ ++  + +Q   HV SLD  LLSL     LR+D+ RR   +P    A   +P+ GP LYL +RP L
Sbjct:   59 PMIYSCLLCFDGRGQKVPAWPFALASFGVGAFALLPYLALR--QPNPHFEGKKSWLLQVLDSRWLGLILTLGAIA---LVAYGLIGGDGQD-FIQQWQTQRFIHVMSLDFCLLSLLFPVLLRDDLARRGLQNPVWFWAIALIPLFGPLLYLCVRPPL 209          
The following BLAST results are available for this feature:
BLAST of EWM27287.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109469|gb|EWM27287.1|6.701e-112100.00hypothetical protein Naga_100080g3 [Nannochloropsi... [more]
gi|303288297|ref|XP_003063437.1|5.192e-2546.51predicted protein [Micromonas pusilla CCMP1545] >g... [more]
gi|255088936|ref|XP_002506390.1|1.708e-2243.21predicted protein [Micromonas commoda] >gi|2265216... [more]
gi|1199294173|gb|OUS49254.1|2.221e-2244.79hypothetical protein BE221DRAFT_188507 [Ostreococc... [more]
gi|693500184|emb|CEF97429.1|4.741e-2244.17unnamed product [Ostreococcus tauri][more]
gi|922858142|gb|KOO26313.1|7.758e-2242.01hypothetical protein Ctob_005005 [Chrysochromulina... [more]
gi|645247332|ref|XP_008229787.1|4.066e-2039.52PREDICTED: uncharacterized protein LOC103329132 [P... [more]
gi|1139784249|gb|ONI18076.1|7.219e-2039.52hypothetical protein PRUPE_3G195700 [Prunus persic... [more]
gi|1162535978|ref|XP_020416343.1|7.309e-2039.52uncharacterized protein LOC18783660 [Prunus persic... [more]
gi|501726042|ref|WP_012626242.1|8.551e-2040.13hypothetical protein [Cyanothece sp. PCC 7425] >gi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3387rna3387Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications