rna3383, rna3383 (mRNA) Nannochloropsis gaditana

Overview
Namerna3383
Unique Namerna3383
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length824
Alignment locationCM002461.1:271531..272910 -

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Properties
Property NameValue
Productdna polymerase delta small subunit
Orig transcript idgnl|cribi|Naga_100824g1.7360.mrna
Orig protein idgnl|cribi|Naga_100824g1.7360
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:271531..272910 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100824g1gene3258Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3383rna3383-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27299.1cds3374Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3383 ID=rna3383|Name=rna3383|organism=Nannochloropsis gaditana|type=mRNA|length=824bp
CTCCCTCCCTCCCTCACCTTGTCCCTCTACATCTGTTTGCACCCTCCCAC
GTACGCCTCGTTCATTTCGGTGCCAACATGGTCTGGCCGTATGTTCTTCA
TGGGTGTTTTCCTTGGCTTGTGACGAAAATGGCGGTTATCAAGCCACCAG
TGTCCATGCCGGTTGCTCAGCACCAATCTACCCTGTCGAATCATCAGCTC
ACAACATAATTGCACCCACTTCACTTCTCCCGCGTTTGGTCTCTAAGGTA
TTGAAGGATGGCCAGCACTGTTCGTGGAATTGTGAGCCGCCAGCAGGCTC
TATGGATGAGGACTGCGGCGGCCCCAGTCTCGGTGACCCGTCGCGCCCTG
AGCAACTGGGATGCTCTGGGTCGGAAGGTGGAGGCGGACGTGGAGGCGAA
AGCGGATTTCAACGCTCTGAAAAATCAGTGGGATGGGATTGAGAAAGACT
TCAATACGTGGTCCAAGGAGGTCGCCCCCATTGACTGGGCCAAGTATAAG
AATAATATCGAAGCCCCTGGTTTCGTGGATTTCTTGAAGGAGCGCTACGA
GGGCATCGATTGGTCGCAATTAAACACGAAACTGAGCGAGGAGGAAATCG
CCGCGGACGCGGCGGGCAAGGCGGCTTTGCTCGAAGAGGGCAAGGCCTTG
GTGGCAGCAGCGGAGAAACTGATCGAAGAGACGCAGGCCAAGATGCACCT
GGCGGCGACGAAGAGAACGAATAAAGACTCCTTGGTGCAAGACGTGTGGG
AGAAGAACCCCGCGATCAAGCAGGAGGTCTTGGACGAGATCGAGAACCAC
CAGTGGTTCAAGGACGTCAAGTAA
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protein sequence of rna3383

>rna3383-protein ID=rna3383-protein|Name=rna3383|organism=Nannochloropsis gaditana|type=polypeptide|length=239bp
MTSKQQEEFALPFKHVDLVLAQLASAVPVDVMPGADDPSNHTLPQQPIHP
CILPHASRYTSFKTVPNPHEAWLQRRLFLGNAGQIPADLARSTAPPSLPS
SPASSAARTLDLMEKTLHWRHLAPTAPDTLACYPFCDDDPFVLPSLPHVY
FAGNQSAFAARLVEEGQEGGVEGKEGKKCLLVAVPSFAATGTVVLVNLND
LTATPLHFKGLPAQRQEREGKEGEGEEMEVEEGEGEEEN
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mRNA from alignment at CM002461.1:271531..272910-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3383 ID=rna3383|Name=rna3383|organism=Nannochloropsis gaditana|type=mRNA|length=1380bp|location=Sequence derived from alignment at CM002461.1:271531..272910- (Nannochloropsis gaditana)
ATGACCAGCAAGCAACAGGAAGAATTCGCCCTGCCATTCAAACACGTAGA
CTTGGTCCTGGCCCAGGTACCGGGGGAGGGAGGGAGGGAGGGAGGGAGGG
AGGGAAGGAGGGACAGAGGCGTCGTGCCACGGCCACCACCTTTTCACAAG
TGCCCTTGCCTGATCTTCCCTCCATGTCACTCCTCCTCCTCTCATCCTGT
CTCATCGAAACTTGCCTGACCTCAGTAGCCCGTGCGTGTGCCTTCTGTGT
CCGAGGCCGTATCCCTTGTACTCAGGGTCCCCACAGAAGCGGCGTCTCTC
GACATGGTTGACCGACGTGTGCTGTGACGGATAAGAGCATGCTAAGACGA
TTGTCGCTTTACGCCGAGCCCAGCCGTGTCACGCTGTAAGCTGACCCCTC
CCTCCCCTTCCCCCTCCCCCTCCCTTGACCCCCAGCTTGCTTCTGCGGTG
CCGGTGGACGTCATGCCTGGCGCCGATGACCCGTCCAACCACACATTGCC
CCAACAGGTACTCCCCCACCTAATCCCCGCCCTCGCCCTCCCTCCTTTCC
TTCCTCCCTCTCCCGACACCTTTCCGACGGCGTTGCTGGACTCCGTAGTA
GAGGCGTGCGCCTCCTTGATTGACGCGTCTAGGCATTATGCTTCCTCTTT
CCATTTTTCCCCCTTCCCTTTTCCTTCTCTCCCTTCCTCTCCCCCTTCTG
GCCTCCCTTTCTACAAAGCCTTCCCCTACGCAAGTTCTTCCCAAACGCCC
TGACTCCTTCACTCCCCCCCACCCTCCCTCCCTCCCCCCTATCACCAGCC
CATCCATCCTTGCATCCTCCCGCATGCCTCCCGTTACACCTCCTTCAAAA
CGGTGCCAAACCCACACGAGGCATGGCTCCAACGCCGTCTCTTCCTAGGG
AATGCCGGGCAGATCCCCGCAGACCTCGCCCGTTCCACCGCCCCGCCCTC
CCTCCCGTCCTCCCCTGCGTCTTCTGCTGCCCGGACCTTGGACTTGATGG
AAAAGACCTTGCACTGGCGTCACTTGGCACCCACGGCGCCGGACACCTTA
GCTTGCTACCCTTTCTGCGACGACGACCCCTTCGTCCTCCCCTCCCTCCC
ACACGTCTACTTCGCGGGGAACCAATCTGCCTTCGCGGCGAGGCTGGTGG
AGGAAGGGCAGGAGGGGGGGGTGGAGGGGAAGGAGGGGAAGAAGTGTCTG
TTGGTAGCAGTCCCTTCCTTTGCGGCGACGGGGACGGTGGTTCTCGTGAA
TTTGAACGACTTGACGGCCACCCCCTTGCACTTCAAGGGATTGCCTGCCC
AAAGGCAGGAGCGGGAGGGAAAGGAGGGGGAAGGGGAGGAGATGGAGGTG
GAGGAAGGCGAGGGAGAAGAGGAGAATTGA
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Coding sequence (CDS) from alignment at CM002461.1:271531..272910-

>rna3383 ID=rna3383|Name=rna3383|organism=Nannochloropsis gaditana|type=CDS|length=2160bp|location=Sequence derived from alignment at CM002461.1:271531..272910- (Nannochloropsis gaditana)
CCCATCCATCCTTGCATCCTCCCGCATGCCTCCCGTTACACCTCCTTCAA
AACGGTGCCAAACCCACACGAGGCATGGCTCCAACGCCGTCTCTTCCTAG
GGAATGCCGGGCAGATCCCCGCAGACCTCGCCCGTTCCACCGCCCCGCCC
TCCCTCCCGTCCTCCCCTGCGTCTTCTGCTGCCCGGACCTTGGACTTGAT
GGAAAAGACCTTGCACTGGCGTCACTTGGCACCCACGGCGCCGGACACCT
TAGCTTGCTACCCTTTCTGCGACGACGACCCCTTCGTCCTCCCCTCCCTC
CCACACGTCTACTTCGCGGGGAACCAATCTGCCTTCGCGGCGAGGCTGGT
GGAGGAAGGGCAGGAGGGGGGGGTGGAGGGGAAGGAGGGGAAGAAGTGTC
TGTTGGTAGCAGTCCCTTCCTTTGCGGCGACGGGGACGGTGGTTCTCGTG
AATTTGAACGACTTGACGGCCACCCCCTTGCACTTCAAGGGATTGCCTGC
CCAAAGGCAGGAGCGGGAGGGAAAGGAGGGGGAAGGGGAGGAGATGGAGG
TGGAGGAAGGCGAGGGAGAAGAGGAGAATTGACTTGCTTCTGCGGTGCCG
GTGGACGTCATGCCTGGCGCCGATGACCCGTCCAACCACACATTGCCCCA
ACAGATGACCAGCAAGCAACAGGAAGAATTCGCCCTGCCATTCAAACACG
TAGACTTGGTCCTGGCCCAGCCCATCCATCCTTGCATCCTCCCGCATGCC
TCCCGTTACACCTCCTTCAAAACGGTGCCAAACCCACACGAGGCATGGCT
CCAACGCCGTCTCTTCCTAGGGAATGCCGGGCAGATCCCCGCAGACCTCG
CCCGTTCCACCGCCCCGCCCTCCCTCCCGTCCTCCCCTGCGTCTTCTGCT
GCCCGGACCTTGGACTTGATGGAAAAGACCTTGCACTGGCGTCACTTGGC
ACCCACGGCGCCGGACACCTTAGCTTGCTACCCTTTCTGCGACGACGACC
CCTTCGTCCTCCCCTCCCTCCCACACGTCTACTTCGCGGGGAACCAATCT
GCCTTCGCGGCGAGGCTGGTGGAGGAAGGGCAGGAGGGGGGGGTGGAGGG
GAAGGAGGGGAAGAAGTGTCTGTTGGTAGCAGTCCCTTCCTTTGCGGCGA
CGGGGACGGTGGTTCTCGTGAATTTGAACGACTTGACGGCCACCCCCTTG
CACTTCAAGGGATTGCCTGCCCAAAGGCAGGAGCGGGAGGGAAAGGAGGG
GGAAGGGGAGGAGATGGAGGTGGAGGAAGGCGAGGGAGAAGAGGAGAATT
GACTTGCTTCTGCGGTGCCGGTGGACGTCATGCCTGGCGCCGATGACCCG
TCCAACCACACATTGCCCCAACAGATGACCAGCAAGCAACAGGAAGAATT
CGCCCTGCCATTCAAACACGTAGACTTGGTCCTGGCCCAGCCCATCCATC
CTTGCATCCTCCCGCATGCCTCCCGTTACACCTCCTTCAAAACGGTGCCA
AACCCACACGAGGCATGGCTCCAACGCCGTCTCTTCCTAGGGAATGCCGG
GCAGATCCCCGCAGACCTCGCCCGTTCCACCGCCCCGCCCTCCCTCCCGT
CCTCCCCTGCGTCTTCTGCTGCCCGGACCTTGGACTTGATGGAAAAGACC
TTGCACTGGCGTCACTTGGCACCCACGGCGCCGGACACCTTAGCTTGCTA
CCCTTTCTGCGACGACGACCCCTTCGTCCTCCCCTCCCTCCCACACGTCT
ACTTCGCGGGGAACCAATCTGCCTTCGCGGCGAGGCTGGTGGAGGAAGGG
CAGGAGGGGGGGGTGGAGGGGAAGGAGGGGAAGAAGTGTCTGTTGGTAGC
AGTCCCTTCCTTTGCGGCGACGGGGACGGTGGTTCTCGTGAATTTGAACG
ACTTGACGGCCACCCCCTTGCACTTCAAGGGATTGCCTGCCCAAAGGCAG
GAGCGGGAGGGAAAGGAGGGGGAAGGGGAGGAGATGGAGGTGGAGGAAGG
CGAGGGAGAAGAGGAGAATTGACTTGCTTCTGCGGTGCCGGTGGACGTCA
TGCCTGGCGCCGATGACCCGTCCAACCACACATTGCCCCAACAGATGACC
AGCAAGCAACAGGAAGAATTCGCCCTGCCATTCAAACACGTAGACTTGGT
CCTGGCCCAG
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Synonyms
Publications