EWM27299.1, cds3374 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27299.1 vs. NCBI_GenBank
Match: gi|585109484|gb|EWM27299.1| (dna polymerase delta small subunit [Nannochloropsis gaditana]) HSP 1 Score: 490.345 bits (1261), Expect = 2.475e-175 Identity = 239/239 (100.00%), Postives = 239/239 (100.00%), Query Frame = 0
Query: 1 MTSKQQEEFALPFKHVDLVLAQLASAVPVDVMPGADDPSNHTLPQQPIHPCILPHASRYTSFKTVPNPHEAWLQRRLFLGNAGQIPADLARSTAPPSLPSSPASSAARTLDLMEKTLHWRHLAPTAPDTLACYPFCDDDPFVLPSLPHVYFAGNQSAFAARLVEEGQEGGVEGKEGKKCLLVAVPSFAATGTVVLVNLNDLTATPLHFKGLPAQRQEREGKEGEGEEMEVEEGEGEEEN 239
MTSKQQEEFALPFKHVDLVLAQLASAVPVDVMPGADDPSNHTLPQQPIHPCILPHASRYTSFKTVPNPHEAWLQRRLFLGNAGQIPADLARSTAPPSLPSSPASSAARTLDLMEKTLHWRHLAPTAPDTLACYPFCDDDPFVLPSLPHVYFAGNQSAFAARLVEEGQEGGVEGKEGKKCLLVAVPSFAATGTVVLVNLNDLTATPLHFKGLPAQRQEREGKEGEGEEMEVEEGEGEEEN
Sbjct: 1 MTSKQQEEFALPFKHVDLVLAQLASAVPVDVMPGADDPSNHTLPQQPIHPCILPHASRYTSFKTVPNPHEAWLQRRLFLGNAGQIPADLARSTAPPSLPSSPASSAARTLDLMEKTLHWRHLAPTAPDTLACYPFCDDDPFVLPSLPHVYFAGNQSAFAARLVEEGQEGGVEGKEGKKCLLVAVPSFAATGTVVLVNLNDLTATPLHFKGLPAQRQEREGKEGEGEEMEVEEGEGEEEN 239
BLAST of EWM27299.1 vs. NCBI_GenBank
Match: gi|1173110442|ref|XP_020529948.1| (DNA polymerase delta small subunit [Amborella trichopoda]) HSP 1 Score: 207.223 bits (526), Expect = 4.220e-61 Identity = 100/208 (48.08%), Postives = 131/208 (62.98%), Query Frame = 0
Query: 1 MTSKQQEEFALPFKHVDLVLAQLASAVPVDVMPGADDPSNHTLPQQPIHPCILPHASRYTSFKTVPNPHEAWLQRRLFLGNAGQIPADLARSTAPPSLPSSPASSAARTLDLMEKTLHWRHLAPTAPDTLACYPFCDDDPFVLPSLPHVYFAGNQSAFAARLVEEGQEGGVEGKEGKKCLLVAVPSFAATGTVVLVNLNDLTATPLHF 208
+ SK Q + + P K DL+L QLA+A+PVD+MPG DP+N++LPQQP+H C+ P AS Y +F + PNPH +L FLG +GQ DLA+ S A LD ME+TL WRHLAPTAPDTL CYPF D DPFV+ S PHVYF GNQ+ + +L ++G EG+ L+++P F TG V++NL +L PL F
Sbjct: 247 LASKDQSKLSEPIKEFDLLLTQLAAAMPVDIMPGPHDPANYSLPQQPLHKCLFPGASAYNTFVSSPNPHSFYLDDVGFLGTSGQNIDDLAK-----------YSEAKEKLDFMERTLRWRHLAPTAPDTLGCYPFTDRDPFVVESCPHVYFVGNQNKYGTQL--------LKGSEGQLARLISIPRFCETGVAVMLNLRNLECHPLSF 435
BLAST of EWM27299.1 vs. NCBI_GenBank
Match: gi|148906690|gb|ABR16494.1| (unknown [Picea sitchensis] >gi|148907279|gb|ABR16778.1| unknown [Picea sitchensis]) HSP 1 Score: 199.519 bits (506), Expect = 4.462e-58 Identity = 98/198 (49.49%), Postives = 124/198 (62.63%), Query Frame = 0
Query: 4 KQQEEFALPFKHVDLVLAQLASAVPVDVMPGADDPSNHTLPQQPIHPCILPHASRYTSFKTVPNPHEAWLQRRLFLGNAGQIPADLARSTAPPSLPSSPASSAARTLDLMEKTLHWRHLAPTAPDTLACYPFCDDDPFVLPSLPHVYFAGNQSAFAARLVEEGQEGGVEGKEGKKCLLVAVPSFAATGTVVLVNLNDL 201
K+Q A P K +DL L QLA+A+PVD+MPG +DP+N +LPQQP+H C+ AS Y +F + NPH+ L FLG +GQ DL + S A LD ME+TL WRHLAPTAPDTL CYPF D DPFV+ PHVYF GNQ +A+RL +EG EG+ LV +PSF TG+ V+VN+ +L
Sbjct: 254 KEQRRLAEPIKELDLALTQLAAAMPVDIMPGPNDPANFSLPQQPLHKCLFSGASAYNTFVSATNPHQFDLDGVCFLGTSGQNIDDLGK-----------YSDAKEKLDYMERTLKWRHLAPTAPDTLGCYPFTDRDPFVIEDCPHVYFCGNQKKYASRL--------LEGSEGQVVRLVCIPSFCETGSAVVVNIRNL 432
BLAST of EWM27299.1 vs. NCBI_GenBank
Match: gi|548859424|gb|ERN17104.1| (hypothetical protein AMTR_s00044p00103310 [Amborella trichopoda]) HSP 1 Score: 195.282 bits (495), Expect = 5.404e-57 Identity = 94/195 (48.21%), Postives = 123/195 (63.08%), Query Frame = 0
Query: 1 MTSKQQEEFALPFKHVDLVLAQLASAVPVDVMPGADDPSNHTLPQQPIHPCILPHASRYTSFKTVPNPHEAWLQRRLFLGNAGQIPADLARSTAPPSLPSSPASSAARTLDLMEKTLHWRHLAPTAPDTLACYPFCDDDPFVLPSLPHVYFAGNQSAFAARLVEEGQEGGVEGKEGKKCLLVAVPSFAATGTVVL 195
+ SK Q + + P K DL+L QLA+A+PVD+MPG DP+N++LPQQP+H C+ P AS Y +F + PNPH +L FLG +GQ DLA+ S A LD ME+TL WRHLAPTAPDTL CYPF D DPFV+ S PHVYF GNQ+ + +L ++G EG+ L+++P F TG V+
Sbjct: 200 LASKDQSKLSEPIKEFDLLLTQLAAAMPVDIMPGPHDPANYSLPQQPLHKCLFPGASAYNTFVSSPNPHSFYLDDVGFLGTSGQNIDDLAK-----------YSEAKEKLDFMERTLRWRHLAPTAPDTLGCYPFTDRDPFVVESCPHVYFVGNQNKYGTQL--------LKGSEGQLARLISIPRFCETGVAVM 375
BLAST of EWM27299.1 vs. NCBI_GenBank
Match: gi|298711679|emb|CBJ32730.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 197.593 bits (501), Expect = 7.972e-57 Identity = 103/208 (49.52%), Postives = 137/208 (65.87%), Query Frame = 0
Query: 1 MTSKQQEEFALPFKHVDLVLAQLASAVPVDVMPGADDPSNHTLPQQPIHPCILPHASRYTSFKTVPNPHEAWLQRRLFLGNAGQIPADLARSTAPPSLPSSPASSAARTLDLMEKTLHWRHLAPTAPDTLACYPFCDDDPFVLPSLPHVYFAGNQSAFAARLVEEGQEGGVEGKEGKKCLLVAVPSFAATGTVVLVNLNDLTATPLHF 208
+ ++QQ A P K +D +LA LA+A PVDVMPG DP+N+TLPQQP+HPC+L +ASR+ + K V NPHEA + R+FLG++GQ D+AR T P + A A L +E+ L WRH+APTAP+TL CYPF +DPFV+ P ++FAGNQ FA + +EG +G K +V VP+FAATG L+NL L TPL+F
Sbjct: 273 LNAEQQRLVASPMKELDTILALLAAAAPVDVMPGESDPANYTLPQQPLHPCLLRNASRFGALKRVTNPHEAKIGERVFLGSSGQPLLDMARYTTPEAEADKDAKPAC--LRRLEEMLKWRHMAPTAPETLGCYPFVTEDPFVVEECPDIFFAGNQPQFATSI--------LEGADGHKGRVVCVPAFAATGQAALLNLESLECTPLNF 470
BLAST of EWM27299.1 vs. NCBI_GenBank
Match: gi|731400252|ref|XP_002279533.2| (PREDICTED: DNA polymerase delta small subunit isoform X1 [Vitis vinifera]) HSP 1 Score: 194.897 bits (494), Expect = 2.488e-56 Identity = 91/208 (43.75%), Postives = 126/208 (60.58%), Query Frame = 0
Query: 1 MTSKQQEEFALPFKHVDLVLAQLASAVPVDVMPGADDPSNHTLPQQPIHPCILPHASRYTSFKTVPNPHEAWLQRRLFLGNAGQIPADLARSTAPPSLPSSPASSAARTLDLMEKTLHWRHLAPTAPDTLACYPFCDDDPFVLPSLPHVYFAGNQSAFAARLVEEGQEGGVEGKEGKKCLLVAVPSFAATGTVVLVNLNDLTATPLHF 208
+ SK Q + P K +D++L Q+A+ +P+D+MPG DDP+N +LPQQP+H C+ P +S Y SF++ NPH L+ FLG +GQ DL + S A L+ ME+TL WRHLAPTAP+TL CYPF D DPF++ S PHVYF GNQ + RL ++G EG+ L+ +P F TG V++N+ +L L F
Sbjct: 248 LASKDQSRLSEPIKELDILLTQIAAGLPLDIMPGPDDPANFSLPQQPLHRCLFPGSSAYNSFRSCTNPHSFELENIRFLGTSGQNVDDLEK-----------YSEAKDKLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLIESCPHVYFVGNQDKYETRL--------IKGSEGQVVRLICIPKFCETGVAVVLNMRNLECHALSF 436
BLAST of EWM27299.1 vs. NCBI_GenBank
Match: gi|297739835|emb|CBI30017.3| (unnamed protein product, partial [Vitis vinifera]) HSP 1 Score: 194.512 bits (493), Expect = 3.032e-56 Identity = 91/208 (43.75%), Postives = 126/208 (60.58%), Query Frame = 0
Query: 1 MTSKQQEEFALPFKHVDLVLAQLASAVPVDVMPGADDPSNHTLPQQPIHPCILPHASRYTSFKTVPNPHEAWLQRRLFLGNAGQIPADLARSTAPPSLPSSPASSAARTLDLMEKTLHWRHLAPTAPDTLACYPFCDDDPFVLPSLPHVYFAGNQSAFAARLVEEGQEGGVEGKEGKKCLLVAVPSFAATGTVVLVNLNDLTATPLHF 208
+ SK Q + P K +D++L Q+A+ +P+D+MPG DDP+N +LPQQP+H C+ P +S Y SF++ NPH L+ FLG +GQ DL + S A L+ ME+TL WRHLAPTAP+TL CYPF D DPF++ S PHVYF GNQ + RL ++G EG+ L+ +P F TG V++N+ +L L F
Sbjct: 245 LASKDQSRLSEPIKELDILLTQIAAGLPLDIMPGPDDPANFSLPQQPLHRCLFPGSSAYNSFRSCTNPHSFELENIRFLGTSGQNVDDLEK-----------YSEAKDKLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLIESCPHVYFVGNQDKYETRL--------IKGSEGQVVRLICIPKFCETGVAVVLNMRNLECHALSF 433
BLAST of EWM27299.1 vs. NCBI_GenBank
Match: gi|147776498|emb|CAN71889.1| (hypothetical protein VITISV_040861 [Vitis vinifera]) HSP 1 Score: 194.126 bits (492), Expect = 3.754e-56 Identity = 91/208 (43.75%), Postives = 126/208 (60.58%), Query Frame = 0
Query: 1 MTSKQQEEFALPFKHVDLVLAQLASAVPVDVMPGADDPSNHTLPQQPIHPCILPHASRYTSFKTVPNPHEAWLQRRLFLGNAGQIPADLARSTAPPSLPSSPASSAARTLDLMEKTLHWRHLAPTAPDTLACYPFCDDDPFVLPSLPHVYFAGNQSAFAARLVEEGQEGGVEGKEGKKCLLVAVPSFAATGTVVLVNLNDLTATPLHF 208
+ SK Q + P K +D++L Q+A+ +P+D+MPG DDP+N +LPQQP+H C+ P +S Y SF++ NPH L+ FLG +GQ DL + S A L+ ME+TL WRHLAPTAP+TL CYPF D DPF++ S PHVYF GNQ + RL ++G EG+ L+ +P F TG V++N+ +L L F
Sbjct: 245 LASKDQSRLSEPIKELDILLTQIAAGLPLDIMPGPDDPANFSLPQQPLHRCLFPGSSAYNSFRSCTNPHSFELENIRFLGTSGQNVDDLEK-----------YSEAKDKLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLIESCPHVYFVGNQDKYETRL--------IKGSEGQVVRLICIPKFCETGVAVVLNMRNLECHALSF 433
BLAST of EWM27299.1 vs. NCBI_GenBank
Match: gi|970019175|ref|XP_015070781.1| (PREDICTED: DNA polymerase delta small subunit [Solanum pennellii]) HSP 1 Score: 194.126 bits (492), Expect = 4.671e-56 Identity = 89/208 (42.79%), Postives = 127/208 (61.06%), Query Frame = 0
Query: 1 MTSKQQEEFALPFKHVDLVLAQLASAVPVDVMPGADDPSNHTLPQQPIHPCILPHASRYTSFKTVPNPHEAWLQRRLFLGNAGQIPADLARSTAPPSLPSSPASSAARTLDLMEKTLHWRHLAPTAPDTLACYPFCDDDPFVLPSLPHVYFAGNQSAFAARLVEEGQEGGVEGKEGKKCLLVAVPSFAATGTVVLVNLNDLTATPLHF 208
+ SK Q P K +D++L Q+A+++P+D+MPG+ DP+N +LPQQP+H C+ P +S Y +F++ NPH L FLG +GQ DL + S A +D ME+TL WRHLAPTAP+TL CYPF D DPF + + PHVYF GNQ + +RL ++G EG+ +L+ +P FA TG V++N+ +L L F
Sbjct: 248 LGSKDQSRLFEPIKELDILLTQIAASIPLDIMPGSSDPANFSLPQQPLHRCLFPGSSAYNTFRSCTNPHCFELDNIRFLGTSGQNIDDLGK-----------YSEANNNIDFMERTLRWRHLAPTAPNTLGCYPFTDRDPFYIETCPHVYFVGNQDKYESRL--------IKGSEGQMVMLICIPRFAETGVAVVLNIRNLECHMLSF 436
BLAST of EWM27299.1 vs. NCBI_GenBank
Match: gi|1191648453|gb|OTG00426.1| (putative DNA polymerase delta small subunit [Helianthus annuus]) HSP 1 Score: 193.356 bits (490), Expect = 9.536e-56 Identity = 90/208 (43.27%), Postives = 128/208 (61.54%), Query Frame = 0
Query: 1 MTSKQQEEFALPFKHVDLVLAQLASAVPVDVMPGADDPSNHTLPQQPIHPCILPHASRYTSFKTVPNPHEAWLQRRLFLGNAGQIPADLARSTAPPSLPSSPASSAARTLDLMEKTLHWRHLAPTAPDTLACYPFCDDDPFVLPSLPHVYFAGNQSAFAARLVEEGQEGGVEGKEGKKCLLVAVPSFAATGTVVLVNLNDLTATPLHF 208
+ SK Q + + P K +D+ L Q+A+ +P+D+M G +DP+N LPQQP++ C+ P +S Y +F++ NPH + FLG +GQ DL + S A TL+ ME+TL WRHLAPTAP+TL CYPF D DPF + S PHVYF GNQ +A R+ ++G EG+ L++VP F+ TG V+VNL +L + L+F
Sbjct: 247 LASKDQSKLSEPIKELDIFLTQIAAGIPIDIMAGYNDPANFALPQQPLNRCLFPGSSAYNTFRSCTNPHLFDVDNVRFLGTSGQNIDDLNK-----------YSEAKDTLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFFIESCPHVYFVGNQDKYATRI--------IKGSEGQVVRLISVPKFSETGIAVMVNLKNLECSTLNF 435 The following BLAST results are available for this feature:
BLAST of EWM27299.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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