EWM27299.1, cds3374 (CDS) Nannochloropsis gaditana

Overview
NameEWM27299.1
Unique Namecds3374
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:272845..272910 -
Alignment locationCM002461.1:272404..272475 -
Alignment locationCM002461.1:271531..272112 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27299.1
Productdna polymerase delta small subunit
Orig transcript idgnl|cribi|Naga_100824g1.7360.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:272845..272910 -
CM002461.1supercontigCM002461.1:272404..272475 -
CM002461.1supercontigCM002461.1:271531..272112 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009058biosynthetic process
GO:0006260DNA replication
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0003887DNA-directed DNA polymerase activity
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR024826DNA_pol_delta/II_ssu
IPR007185DNA_pol_alpha/epsilon_bsu
Homology
BLAST of EWM27299.1 vs. NCBI_GenBank
Match: gi|585109484|gb|EWM27299.1| (dna polymerase delta small subunit [Nannochloropsis gaditana])

HSP 1 Score: 490.345 bits (1261), Expect = 2.475e-175
Identity = 239/239 (100.00%), Postives = 239/239 (100.00%), Query Frame = 0
Query:    1 MTSKQQEEFALPFKHVDLVLAQLASAVPVDVMPGADDPSNHTLPQQPIHPCILPHASRYTSFKTVPNPHEAWLQRRLFLGNAGQIPADLARSTAPPSLPSSPASSAARTLDLMEKTLHWRHLAPTAPDTLACYPFCDDDPFVLPSLPHVYFAGNQSAFAARLVEEGQEGGVEGKEGKKCLLVAVPSFAATGTVVLVNLNDLTATPLHFKGLPAQRQEREGKEGEGEEMEVEEGEGEEEN 239
            MTSKQQEEFALPFKHVDLVLAQLASAVPVDVMPGADDPSNHTLPQQPIHPCILPHASRYTSFKTVPNPHEAWLQRRLFLGNAGQIPADLARSTAPPSLPSSPASSAARTLDLMEKTLHWRHLAPTAPDTLACYPFCDDDPFVLPSLPHVYFAGNQSAFAARLVEEGQEGGVEGKEGKKCLLVAVPSFAATGTVVLVNLNDLTATPLHFKGLPAQRQEREGKEGEGEEMEVEEGEGEEEN
Sbjct:    1 MTSKQQEEFALPFKHVDLVLAQLASAVPVDVMPGADDPSNHTLPQQPIHPCILPHASRYTSFKTVPNPHEAWLQRRLFLGNAGQIPADLARSTAPPSLPSSPASSAARTLDLMEKTLHWRHLAPTAPDTLACYPFCDDDPFVLPSLPHVYFAGNQSAFAARLVEEGQEGGVEGKEGKKCLLVAVPSFAATGTVVLVNLNDLTATPLHFKGLPAQRQEREGKEGEGEEMEVEEGEGEEEN 239          
BLAST of EWM27299.1 vs. NCBI_GenBank
Match: gi|1173110442|ref|XP_020529948.1| (DNA polymerase delta small subunit [Amborella trichopoda])

HSP 1 Score: 207.223 bits (526), Expect = 4.220e-61
Identity = 100/208 (48.08%), Postives = 131/208 (62.98%), Query Frame = 0
Query:    1 MTSKQQEEFALPFKHVDLVLAQLASAVPVDVMPGADDPSNHTLPQQPIHPCILPHASRYTSFKTVPNPHEAWLQRRLFLGNAGQIPADLARSTAPPSLPSSPASSAARTLDLMEKTLHWRHLAPTAPDTLACYPFCDDDPFVLPSLPHVYFAGNQSAFAARLVEEGQEGGVEGKEGKKCLLVAVPSFAATGTVVLVNLNDLTATPLHF 208
            + SK Q + + P K  DL+L QLA+A+PVD+MPG  DP+N++LPQQP+H C+ P AS Y +F + PNPH  +L    FLG +GQ   DLA+            S A   LD ME+TL WRHLAPTAPDTL CYPF D DPFV+ S PHVYF GNQ+ +  +L        ++G EG+   L+++P F  TG  V++NL +L   PL F
Sbjct:  247 LASKDQSKLSEPIKEFDLLLTQLAAAMPVDIMPGPHDPANYSLPQQPLHKCLFPGASAYNTFVSSPNPHSFYLDDVGFLGTSGQNIDDLAK-----------YSEAKEKLDFMERTLRWRHLAPTAPDTLGCYPFTDRDPFVVESCPHVYFVGNQNKYGTQL--------LKGSEGQLARLISIPRFCETGVAVMLNLRNLECHPLSF 435          
BLAST of EWM27299.1 vs. NCBI_GenBank
Match: gi|148906690|gb|ABR16494.1| (unknown [Picea sitchensis] >gi|148907279|gb|ABR16778.1| unknown [Picea sitchensis])

HSP 1 Score: 199.519 bits (506), Expect = 4.462e-58
Identity = 98/198 (49.49%), Postives = 124/198 (62.63%), Query Frame = 0
Query:    4 KQQEEFALPFKHVDLVLAQLASAVPVDVMPGADDPSNHTLPQQPIHPCILPHASRYTSFKTVPNPHEAWLQRRLFLGNAGQIPADLARSTAPPSLPSSPASSAARTLDLMEKTLHWRHLAPTAPDTLACYPFCDDDPFVLPSLPHVYFAGNQSAFAARLVEEGQEGGVEGKEGKKCLLVAVPSFAATGTVVLVNLNDL 201
            K+Q   A P K +DL L QLA+A+PVD+MPG +DP+N +LPQQP+H C+   AS Y +F +  NPH+  L    FLG +GQ   DL +            S A   LD ME+TL WRHLAPTAPDTL CYPF D DPFV+   PHVYF GNQ  +A+RL        +EG EG+   LV +PSF  TG+ V+VN+ +L
Sbjct:  254 KEQRRLAEPIKELDLALTQLAAAMPVDIMPGPNDPANFSLPQQPLHKCLFSGASAYNTFVSATNPHQFDLDGVCFLGTSGQNIDDLGK-----------YSDAKEKLDYMERTLKWRHLAPTAPDTLGCYPFTDRDPFVIEDCPHVYFCGNQKKYASRL--------LEGSEGQVVRLVCIPSFCETGSAVVVNIRNL 432          
BLAST of EWM27299.1 vs. NCBI_GenBank
Match: gi|548859424|gb|ERN17104.1| (hypothetical protein AMTR_s00044p00103310 [Amborella trichopoda])

HSP 1 Score: 195.282 bits (495), Expect = 5.404e-57
Identity = 94/195 (48.21%), Postives = 123/195 (63.08%), Query Frame = 0
Query:    1 MTSKQQEEFALPFKHVDLVLAQLASAVPVDVMPGADDPSNHTLPQQPIHPCILPHASRYTSFKTVPNPHEAWLQRRLFLGNAGQIPADLARSTAPPSLPSSPASSAARTLDLMEKTLHWRHLAPTAPDTLACYPFCDDDPFVLPSLPHVYFAGNQSAFAARLVEEGQEGGVEGKEGKKCLLVAVPSFAATGTVVL 195
            + SK Q + + P K  DL+L QLA+A+PVD+MPG  DP+N++LPQQP+H C+ P AS Y +F + PNPH  +L    FLG +GQ   DLA+            S A   LD ME+TL WRHLAPTAPDTL CYPF D DPFV+ S PHVYF GNQ+ +  +L        ++G EG+   L+++P F  TG  V+
Sbjct:  200 LASKDQSKLSEPIKEFDLLLTQLAAAMPVDIMPGPHDPANYSLPQQPLHKCLFPGASAYNTFVSSPNPHSFYLDDVGFLGTSGQNIDDLAK-----------YSEAKEKLDFMERTLRWRHLAPTAPDTLGCYPFTDRDPFVVESCPHVYFVGNQNKYGTQL--------LKGSEGQLARLISIPRFCETGVAVM 375          
BLAST of EWM27299.1 vs. NCBI_GenBank
Match: gi|298711679|emb|CBJ32730.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 197.593 bits (501), Expect = 7.972e-57
Identity = 103/208 (49.52%), Postives = 137/208 (65.87%), Query Frame = 0
Query:    1 MTSKQQEEFALPFKHVDLVLAQLASAVPVDVMPGADDPSNHTLPQQPIHPCILPHASRYTSFKTVPNPHEAWLQRRLFLGNAGQIPADLARSTAPPSLPSSPASSAARTLDLMEKTLHWRHLAPTAPDTLACYPFCDDDPFVLPSLPHVYFAGNQSAFAARLVEEGQEGGVEGKEGKKCLLVAVPSFAATGTVVLVNLNDLTATPLHF 208
            + ++QQ   A P K +D +LA LA+A PVDVMPG  DP+N+TLPQQP+HPC+L +ASR+ + K V NPHEA +  R+FLG++GQ   D+AR T P +     A  A   L  +E+ L WRH+APTAP+TL CYPF  +DPFV+   P ++FAGNQ  FA  +        +EG +G K  +V VP+FAATG   L+NL  L  TPL+F
Sbjct:  273 LNAEQQRLVASPMKELDTILALLAAAAPVDVMPGESDPANYTLPQQPLHPCLLRNASRFGALKRVTNPHEAKIGERVFLGSSGQPLLDMARYTTPEAEADKDAKPAC--LRRLEEMLKWRHMAPTAPETLGCYPFVTEDPFVVEECPDIFFAGNQPQFATSI--------LEGADGHKGRVVCVPAFAATGQAALLNLESLECTPLNF 470          
BLAST of EWM27299.1 vs. NCBI_GenBank
Match: gi|731400252|ref|XP_002279533.2| (PREDICTED: DNA polymerase delta small subunit isoform X1 [Vitis vinifera])

HSP 1 Score: 194.897 bits (494), Expect = 2.488e-56
Identity = 91/208 (43.75%), Postives = 126/208 (60.58%), Query Frame = 0
Query:    1 MTSKQQEEFALPFKHVDLVLAQLASAVPVDVMPGADDPSNHTLPQQPIHPCILPHASRYTSFKTVPNPHEAWLQRRLFLGNAGQIPADLARSTAPPSLPSSPASSAARTLDLMEKTLHWRHLAPTAPDTLACYPFCDDDPFVLPSLPHVYFAGNQSAFAARLVEEGQEGGVEGKEGKKCLLVAVPSFAATGTVVLVNLNDLTATPLHF 208
            + SK Q   + P K +D++L Q+A+ +P+D+MPG DDP+N +LPQQP+H C+ P +S Y SF++  NPH   L+   FLG +GQ   DL +            S A   L+ ME+TL WRHLAPTAP+TL CYPF D DPF++ S PHVYF GNQ  +  RL        ++G EG+   L+ +P F  TG  V++N+ +L    L F
Sbjct:  248 LASKDQSRLSEPIKELDILLTQIAAGLPLDIMPGPDDPANFSLPQQPLHRCLFPGSSAYNSFRSCTNPHSFELENIRFLGTSGQNVDDLEK-----------YSEAKDKLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLIESCPHVYFVGNQDKYETRL--------IKGSEGQVVRLICIPKFCETGVAVVLNMRNLECHALSF 436          
BLAST of EWM27299.1 vs. NCBI_GenBank
Match: gi|297739835|emb|CBI30017.3| (unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 194.512 bits (493), Expect = 3.032e-56
Identity = 91/208 (43.75%), Postives = 126/208 (60.58%), Query Frame = 0
Query:    1 MTSKQQEEFALPFKHVDLVLAQLASAVPVDVMPGADDPSNHTLPQQPIHPCILPHASRYTSFKTVPNPHEAWLQRRLFLGNAGQIPADLARSTAPPSLPSSPASSAARTLDLMEKTLHWRHLAPTAPDTLACYPFCDDDPFVLPSLPHVYFAGNQSAFAARLVEEGQEGGVEGKEGKKCLLVAVPSFAATGTVVLVNLNDLTATPLHF 208
            + SK Q   + P K +D++L Q+A+ +P+D+MPG DDP+N +LPQQP+H C+ P +S Y SF++  NPH   L+   FLG +GQ   DL +            S A   L+ ME+TL WRHLAPTAP+TL CYPF D DPF++ S PHVYF GNQ  +  RL        ++G EG+   L+ +P F  TG  V++N+ +L    L F
Sbjct:  245 LASKDQSRLSEPIKELDILLTQIAAGLPLDIMPGPDDPANFSLPQQPLHRCLFPGSSAYNSFRSCTNPHSFELENIRFLGTSGQNVDDLEK-----------YSEAKDKLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLIESCPHVYFVGNQDKYETRL--------IKGSEGQVVRLICIPKFCETGVAVVLNMRNLECHALSF 433          
BLAST of EWM27299.1 vs. NCBI_GenBank
Match: gi|147776498|emb|CAN71889.1| (hypothetical protein VITISV_040861 [Vitis vinifera])

HSP 1 Score: 194.126 bits (492), Expect = 3.754e-56
Identity = 91/208 (43.75%), Postives = 126/208 (60.58%), Query Frame = 0
Query:    1 MTSKQQEEFALPFKHVDLVLAQLASAVPVDVMPGADDPSNHTLPQQPIHPCILPHASRYTSFKTVPNPHEAWLQRRLFLGNAGQIPADLARSTAPPSLPSSPASSAARTLDLMEKTLHWRHLAPTAPDTLACYPFCDDDPFVLPSLPHVYFAGNQSAFAARLVEEGQEGGVEGKEGKKCLLVAVPSFAATGTVVLVNLNDLTATPLHF 208
            + SK Q   + P K +D++L Q+A+ +P+D+MPG DDP+N +LPQQP+H C+ P +S Y SF++  NPH   L+   FLG +GQ   DL +            S A   L+ ME+TL WRHLAPTAP+TL CYPF D DPF++ S PHVYF GNQ  +  RL        ++G EG+   L+ +P F  TG  V++N+ +L    L F
Sbjct:  245 LASKDQSRLSEPIKELDILLTQIAAGLPLDIMPGPDDPANFSLPQQPLHRCLFPGSSAYNSFRSCTNPHSFELENIRFLGTSGQNVDDLEK-----------YSEAKDKLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLIESCPHVYFVGNQDKYETRL--------IKGSEGQVVRLICIPKFCETGVAVVLNMRNLECHALSF 433          
BLAST of EWM27299.1 vs. NCBI_GenBank
Match: gi|970019175|ref|XP_015070781.1| (PREDICTED: DNA polymerase delta small subunit [Solanum pennellii])

HSP 1 Score: 194.126 bits (492), Expect = 4.671e-56
Identity = 89/208 (42.79%), Postives = 127/208 (61.06%), Query Frame = 0
Query:    1 MTSKQQEEFALPFKHVDLVLAQLASAVPVDVMPGADDPSNHTLPQQPIHPCILPHASRYTSFKTVPNPHEAWLQRRLFLGNAGQIPADLARSTAPPSLPSSPASSAARTLDLMEKTLHWRHLAPTAPDTLACYPFCDDDPFVLPSLPHVYFAGNQSAFAARLVEEGQEGGVEGKEGKKCLLVAVPSFAATGTVVLVNLNDLTATPLHF 208
            + SK Q     P K +D++L Q+A+++P+D+MPG+ DP+N +LPQQP+H C+ P +S Y +F++  NPH   L    FLG +GQ   DL +            S A   +D ME+TL WRHLAPTAP+TL CYPF D DPF + + PHVYF GNQ  + +RL        ++G EG+  +L+ +P FA TG  V++N+ +L    L F
Sbjct:  248 LGSKDQSRLFEPIKELDILLTQIAASIPLDIMPGSSDPANFSLPQQPLHRCLFPGSSAYNTFRSCTNPHCFELDNIRFLGTSGQNIDDLGK-----------YSEANNNIDFMERTLRWRHLAPTAPNTLGCYPFTDRDPFYIETCPHVYFVGNQDKYESRL--------IKGSEGQMVMLICIPRFAETGVAVVLNIRNLECHMLSF 436          
BLAST of EWM27299.1 vs. NCBI_GenBank
Match: gi|1191648453|gb|OTG00426.1| (putative DNA polymerase delta small subunit [Helianthus annuus])

HSP 1 Score: 193.356 bits (490), Expect = 9.536e-56
Identity = 90/208 (43.27%), Postives = 128/208 (61.54%), Query Frame = 0
Query:    1 MTSKQQEEFALPFKHVDLVLAQLASAVPVDVMPGADDPSNHTLPQQPIHPCILPHASRYTSFKTVPNPHEAWLQRRLFLGNAGQIPADLARSTAPPSLPSSPASSAARTLDLMEKTLHWRHLAPTAPDTLACYPFCDDDPFVLPSLPHVYFAGNQSAFAARLVEEGQEGGVEGKEGKKCLLVAVPSFAATGTVVLVNLNDLTATPLHF 208
            + SK Q + + P K +D+ L Q+A+ +P+D+M G +DP+N  LPQQP++ C+ P +S Y +F++  NPH   +    FLG +GQ   DL +            S A  TL+ ME+TL WRHLAPTAP+TL CYPF D DPF + S PHVYF GNQ  +A R+        ++G EG+   L++VP F+ TG  V+VNL +L  + L+F
Sbjct:  247 LASKDQSKLSEPIKELDIFLTQIAAGIPIDIMAGYNDPANFALPQQPLNRCLFPGSSAYNTFRSCTNPHLFDVDNVRFLGTSGQNIDDLNK-----------YSEAKDTLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFFIESCPHVYFVGNQDKYATRI--------IKGSEGQVVRLISVPKFSETGIAVMVNLKNLECSTLNF 435          
The following BLAST results are available for this feature:
BLAST of EWM27299.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109484|gb|EWM27299.1|2.475e-175100.00dna polymerase delta small subunit [Nannochloropsi... [more]
gi|1173110442|ref|XP_020529948.1|4.220e-6148.08DNA polymerase delta small subunit [Amborella tric... [more]
gi|148906690|gb|ABR16494.1|4.462e-5849.49unknown [Picea sitchensis] >gi|148907279|gb|ABR167... [more]
gi|548859424|gb|ERN17104.1|5.404e-5748.21hypothetical protein AMTR_s00044p00103310 [Amborel... [more]
gi|298711679|emb|CBJ32730.1|7.972e-5749.52conserved unknown protein [Ectocarpus siliculosus][more]
gi|731400252|ref|XP_002279533.2|2.488e-5643.75PREDICTED: DNA polymerase delta small subunit isof... [more]
gi|297739835|emb|CBI30017.3|3.032e-5643.75unnamed protein product, partial [Vitis vinifera][more]
gi|147776498|emb|CAN71889.1|3.754e-5643.75hypothetical protein VITISV_040861 [Vitis vinifera... [more]
gi|970019175|ref|XP_015070781.1|4.671e-5642.79PREDICTED: DNA polymerase delta small subunit [Sol... [more]
gi|1191648453|gb|OTG00426.1|9.536e-5643.27putative DNA polymerase delta small subunit [Helia... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3383rna3383Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications