rna338, rna338 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna338
Unique Name	rna338
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2622
Alignment location	CM002455.1:835174..836409 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100003g159.1805.mrna
Orig protein id	gnl\|cribi\|Naga_100003g159.1805
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:835174..836409 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100003g159	gene326	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna338	rna338-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30288.1	cds338	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:835174..836409+
coding sequence from alignment at CM002455.1:835174..836409+

mRNA sequence

>rna338 ID=rna338|Name=rna338|organism=Nannochloropsis gaditana|type=mRNA|length=2622bp
ATGGTTAATTTCACGGTCGACCAGCTGAGGGCCATGATGGACCTGAAGCA
CAACATTCGAAACATGTCGGTGATCGCGCACGTGGACCACGGAAAATCCA
CTCTTACGGACTCCCTCGTTTCCAAGGCTGGCATTATCGCGGCGAAGAAT
GCTGGAGATGCTCGCTTCACTGACACCCGCGCTGATGAGCAGGAGCGCTG
CATCACAATCAAGTCAACCGGAATTTCCATGTTCTTCGAGTACGACATGG
ACGCGGGGGAGAAGCTCGCCCAGGCTGCGGCCGAGGCGCAGCTTACCGGT
GAGAAGGCCGATGCAGGGGCCAGCTCTGCCAATTCTTCAGCTATTACCAC
CGCCGCGGCGGCGAACGTGGAAATTAACGACAAATGCTTTCTGATCAACC
TCATCGACTCCCCGGGACACGTGGACTTCTCTTCCGAGGTGACGGCCGCG
CTCCGTGTGACGGATGGAGCCTTGGTTGTGGTTGATTGCATCGAAGGTGT
CTGCGTGCAAACCGAGACTGTGCTTCGCCAGGCTATCTCAGAGCGCGTGC
GCCCCGTGCTTATGGTGAACAAAGTGGACCGAGCCCTCCTTGAACTTCAG
CTTCCCCCCGAGGAGATGTATCAATCTTTCTCTCGCGCAATTGAGTCGGT
GAACGTGATTATCGCCACTTACAATGACGCACTGATGGGTGACGTGCAGG
TCTATCCCGAGAAGGGCACTGTCGCTTTCGGGTCGGGCTTGCACCAGTGG
GGCTTCACCCTGAAGAAGTTCGCGCGCACCTACGCCGCCAAGTTCAACAC
TGATGAGAGTTCCTTCATGCAGAAGCTCTGGGGCGACTGGTTTTACGACC
AGGAGGCGAAGAAGTGGAAGACTCAGAGTGAGAACGGCACCCTGAAGCGC
GCCTTCTGTCAGTTCATTATGGACCCCATCTGCAAGGTCTTCGAGGCCGT
GATGGAGGACAAGACGGCCAAGATCGAGAAGATGCTGAAGGTGATCGGCG
TCACCCTGAAAGGTGATGACAAGGAGCTGAAGGGGAAACCCCTTCTCAAG
CGCATTATGCAGAAGTGGATCCCGGCCGCCGACGCCATTCTGGAGATGAT
TGTCGTTCATCTGCCCTCCCCTGTCGCCGCCCAGAAGTACCGCGTGGACA
ACCTGTATGACGGGCCCCTGGACGACGAGACGGCCAACGCCATCCGCACC
TGCGACACGGGCCCGGACGCGCCTCTCTGCATGTACGTGTCCAAGATGGT
GCCCACCTCGGACAAGGGCCGCTTCTACGCCTTCGGGCGCGTCTTCGCGG
GGCGCATTGCAACGGGCCAGAAGTGCCGCATTCTGGGCCCCAACTACGTT
CCCGGAAAAAAAACTGACCTGTGGGTGAAGAACATCCAGCGCACTATCGT
CATGATGGGGCGCTACGTCGAGCAGGTGCAGGACGTGCCTGCCGGAAACA
CGTGCGGTCTGGTGGGCGTGGACCAGTACTTGCTCAAGTCGGGGACCATC
ACCACCGCAGAGAACGCGCACTGTATCAAGACCATGAAGTTCTCGGTATC
TCCTGTGGTGCGCGTGGCCGTGGAGCCCAAGAACAGCTCGGACCTCCCCA
AGCTGGTTGAGGGCATGAAACGCCTGGCCAAATCGGACCCCATGGTCCTC
TGCTACACAGAGGAGTCCGGCGAGCACATCATTGCCGGAGCAGGGGAACT
CCATTTGGAGATTTGTTTGAAGGACCTTCAAGAGGATTTCATGGGGACGG
AGGTGAAGATCTCTGACCCGGTCGTCTCGTACCGCGAGACGGTCACCGGC
GTCTCGAGCCAGACTTGCCTGTCCAAGTCACCCAACAAGCACAACCGCCT
TTACGCCACGGCCGAGCCCCTCGCCGACGGCCTTCCCGACGAGATCGAGG
ACGGCAAAGTCAACGCGCGCGACGATTTCAAACTGCGGGCGCGGTATCTG
GCGGATACTCACGGATGGGACGTCACGGAGGCCCGTAAGATCTGGGCCTT
CGCCCCCGACGGGACCGGGCCCAACATCGTTCTCGACGCCACCAAGGGTG
TGAATTACTTGAACGAGATCAAGGAGTCGGTAGTAGGAGGGTTTCAGCAG
GCGTGCGGGCAGGGTCCCATGGCGGACGAGCAGGTCCGTGGCGTCTGCGT
CAAGCTGCTGGACGTGGTCCTCCACGCCGACGCCATCCACCGTGGCATGG
GCCAGATTCAGCCAACGGCCCGCCGTGTCGTGCATGCTTGTATCTTGACG
GCGTCTCCTGGAGTGTTGGAGCCTGTTTATCTCTGCGAGATTTCCTGTCC
GCAGGACGCCATGGGAGGTTGCTATGGCGTACTGACACGTCGTCGTGGTC
ATGTCTTTTCCGAGGAGCAGCGGCCTGGCACGCCTATGATGACACTGAAG
GCGTATCTGCCTGTGATGGAATCGTTCGGCTTCACTGCTGATCTTCGAGC
CGGCACAGGGGGCAAGGCCTTCCCGCAGTGCGTGTTCGACCACTGGCAGA
TGATGGGGGGAGATCCGCTCGAGGCAGGCACCAAGTCGAACGAGGTTATG
CTTGGTGTCCGTAAGCGCAAGGGTCTTTCGCCCGAAATTCCCCCGCTGGA
TAGGTTTCTCGATCGACTCTAA

protein sequence of rna338

>rna338-protein ID=rna338-protein|Name=rna338|organism=Nannochloropsis gaditana|type=polypeptide|length=198bp
MKGFLTGGKITVLTTRSNNSKKQAIMLAKLAKVPCLMLCYLFWAVRGICS
VHTLKKPAQQSSPHMDRQKFEAMFPSLVAHYPKVRGREHYSPPERRTPRP
ATQHVADGADLTARISSHGVLWAAFEDLLSIFFGTDDVACVKRTFATVYE
EHLNSLNLEQIEEVAKCTVGNRGRTTNSCQLRAIAACKDCNFWRKRLN

mRNA from alignment at CM002455.1:835174..836409+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna338 ID=rna338|Name=rna338|organism=Nannochloropsis gaditana|type=mRNA|length=1236bp|location=Sequence derived from alignment at CM002455.1:835174..836409+ (Nannochloropsis gaditana)
ATGAAAGGTTTTTTGACGGGAGGTAAGATCACTGTTCTAACGACGAgaag
caacaacagcaaaaAACAGGCCATTATGTTAGCAAAACTTGCAAAGGTGC
CGTGTCTCATGCTTTGTTATTTATTTTGGTAAGAACATGTCATGGCGGAC
GCCGGTCCTCGggaccatggaggaggttatTGTAGTAGCGCCGCGCGACT
GACATGGAAAAAGCCACACTATAAAGCACAAGCGCACAAGCGcgaggaga
ggcagaggcaaGTCAAGGTGTCTACATAAGAGGTTGTCTCAGTAAAGGCC
AACAATGCGCCCCACTAGAGAGAGTCAGACCGTCGGAGCCAACGCCGGCA
GCCTTCCGGTACTAAAGTAGTATAGTACTAGGTCATCCGCGGTTAGGGTC
CTTCTCTCCTAATCCCAGTATCGGCTTAGACTACCATCCAAACTTGATGA
AAATTGTGTGGTTTGTGAAAATTGGCTGAAGTACATGAACTTGGGGTCAC
AGCACAAAGCAGCATCCTGGAGCGGCTAGAAGGTTTCTCTCAGTCTGGAA
GTCTCAGGCTGATGAGAGGGATGTGCTCTCTTTCCGGGATTTTCTCGGAT
GTCACATGCACTAACACAATTTTCGTCTTCAAGCCTACTTGTCACATGGA
TTTCGTTTCATGACAATTCATGATACAAGTgtcgcctttcttcccctcta
tTTCATGCAGGGCCGTCCGAGGAATCTGTTCAGTTCACACATTGAAGAAG
CCTGCCCAACAAAGCAGTCCACACATGGATAGGCAAAAGTTTGAAGCTAT
GTTCCCTTCCCTTGTTGCGCATTATCCCAAAGTTCGTGGGCGAGAACATT
ATAGTCCGCCTGAGAGGCGGACACCGAGGCCGGCGACGCAGCACGTAGCC
GACGGGGCGGACTTGACCGCACGCATCTCTTCACATGGTGTATTGTGGGC
AGCCTTTGAAGACCTGTTGAGCATTTTTTTCGGAACAGATGACGTAGCAT
GTGTCAAACGCACATTTGCTACAGTATACGAAGAGCATCTCAATAGCTTG
AATTTGGAGCAAATTGAGGAGGTCGCCAAGTGCACGGGTTGATTGACGAG
TGATAAATCAAGAAGTAGAACGCTGAAGACGTGGCTGTATTCAGTCGGCA
ATAGAGGAAGGACAACAAATTCGTGCCAACTCAGGGCAATCGCCGCTTGT
AAAGATTGTAATTTCTGGCGCAAACGTTTAAATTAA

Coding sequence (CDS) from alignment at CM002455.1:835174..836409+

>rna338 ID=rna338|Name=rna338|organism=Nannochloropsis gaditana|type=CDS|length=1791bp|location=Sequence derived from alignment at CM002455.1:835174..836409+ (Nannochloropsis gaditana)
ATGAAAGGTTTTTTGACGGGAGGTAAGATCACTGTTCTAACGACGAgaag
caacaacagcaaaaAACAGGCCATTATGTTAGCAAAACTTGCAAAGGTGC
CGTGTCTCATGCTTTGTTATTTATTTTGGGCCGTCCGAGGAATCTGTTCA
GTTCACACATTGAAGAAGCCTGCCCAACAAAGCAGTCCACACATGGATAG
GCAAAAGTTTGAAGCTATGTTCCCTTCCCTTGTTGCGCATTATCCCAAAG
TTCGTGGGCGAGAACATTATAGTCCGCCTGAGAGGCGGACACCGAGGCCG
GCGACGCAGCACGTAGCCGACGGGGCGGACTTGACCGCACGCATCTCTTC
ACATGGTGTATTGTGGGCAGCCTTTGAAGACCTGTTGAGCATTTTTTTCG
GAACAGATGACGTAGCATGTGTCAAACGCACATTTGCTACAGTATACGAA
GAGCATCTCAATAGCTTGAATTTGGAGCAAATTGAGGAGGTCGCCAAGTG
CACGGTCGGCAATAGAGGAAGGACAACAAATTCGTGCCAACTCAGGGCAA
TCGCCGCTTGTAAAGATTGTAATTTCTGGCGCAAACGTTTAAATTAAATG
AAAGGTTTTTTGACGGGAGGTAAGATCACTGTTCTAACGACGAgaagcaa
caacagcaaaaAACAGGCCATTATGTTAGCAAAACTTGCAAAGGTGCCGT
GTCTCATGCTTTGTTATTTATTTTGGGCCGTCCGAGGAATCTGTTCAGTT
CACACATTGAAGAAGCCTGCCCAACAAAGCAGTCCACACATGGATAGGCA
AAAGTTTGAAGCTATGTTCCCTTCCCTTGTTGCGCATTATCCCAAAGTTC
GTGGGCGAGAACATTATAGTCCGCCTGAGAGGCGGACACCGAGGCCGGCG
ACGCAGCACGTAGCCGACGGGGCGGACTTGACCGCACGCATCTCTTCACA
TGGTGTATTGTGGGCAGCCTTTGAAGACCTGTTGAGCATTTTTTTCGGAA
CAGATGACGTAGCATGTGTCAAACGCACATTTGCTACAGTATACGAAGAG
CATCTCAATAGCTTGAATTTGGAGCAAATTGAGGAGGTCGCCAAGTGCAC
GGTCGGCAATAGAGGAAGGACAACAAATTCGTGCCAACTCAGGGCAATCG
CCGCTTGTAAAGATTGTAATTTCTGGCGCAAACGTTTAAATTAAATGAAA
GGTTTTTTGACGGGAGGTAAGATCACTGTTCTAACGACGAgaagcaacaa
cagcaaaaAACAGGCCATTATGTTAGCAAAACTTGCAAAGGTGCCGTGTC
TCATGCTTTGTTATTTATTTTGGGCCGTCCGAGGAATCTGTTCAGTTCAC
ACATTGAAGAAGCCTGCCCAACAAAGCAGTCCACACATGGATAGGCAAAA
GTTTGAAGCTATGTTCCCTTCCCTTGTTGCGCATTATCCCAAAGTTCGTG
GGCGAGAACATTATAGTCCGCCTGAGAGGCGGACACCGAGGCCGGCGACG
CAGCACGTAGCCGACGGGGCGGACTTGACCGCACGCATCTCTTCACATGG
TGTATTGTGGGCAGCCTTTGAAGACCTGTTGAGCATTTTTTTCGGAACAG
ATGACGTAGCATGTGTCAAACGCACATTTGCTACAGTATACGAAGAGCAT
CTCAATAGCTTGAATTTGGAGCAAATTGAGGAGGTCGCCAAGTGCACGGT
CGGCAATAGAGGAAGGACAACAAATTCGTGCCAACTCAGGGCAATCGCCG
CTTGTAAAGATTGTAATTTCTGGCGCAAACGTTTAAATTAA

Synonyms

Publications