rna3374, rna3374 (mRNA) Nannochloropsis gaditana

Overview
Namerna3374
Unique Namerna3374
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1243
Alignment locationCM002461.1:253301..254067 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101715g2.4301.mrna
Orig protein idgnl|cribi|Naga_101715g2.4301
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:253301..254067 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101715g2gene3249Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27309.1cds3365Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3374rna3374-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3374 ID=rna3374|Name=rna3374|organism=Nannochloropsis gaditana|type=mRNA|length=1243bp
GCGGCCTTCGCGGAGGAGGGGCGGCTGCTGGTCGGCTTCGGTTACCCCAG
CCCGTCCTCCCCCCCGCCCTCCTTCCCTGCTTCCCCTTGCGTGCGCCTCT
ACGACCTGGGGAAGCGCCGATTGTTGAAGCGGGCCGACTCGGGATGTCTG
AGCGGGAAGGGAGGGCGGGAAGGCGGGCGCCCGGGGGGAGGTATCACCCG
GCTGCTGCACCAAGGATCCTGGATCTATGCGGTGGATTGCCTCACTGGGG
TGCACGCCTTGTACTACCTTCCCGGGGAGAATACCTTCACCCTGGTCGCG
GACATGGAGGCCTCCCCCCGGTTGGTCACGGACGCGTTGCTGCTTGATAC
CCGGACGGTCGCCGGTGCCGACCGGCAGGGGAACATTTTTGTGGCGCGAA
CGCCCTGGGAAGCAGTGATGAGTGTGGAAGGGGTGGGGTTGGGGAATGAG
CAGAAGGGTGGGAGGGAGGAGGGGATTGGTCCTACGGGTGGGAGAGCCTT
TTGGGAGGTGTGTGGGGAGGGGGGGGAGGCGCCTTCGAGATTGGAGAGTC
TGGTCGAGTACCATGTGGGGGAAACGGTTTCGGCGATGGTCCCGGCCCGC
CTCGGACGGAAGGGGGAGGGGGCTCGGATGGGCTTGCTGTACGCGACGAT
TGAAGGCACCTTAGGAATCTTGTCCCCCCTGTACTCTCCCCGCGAGAAAG
AGGTCTTGCTCAAAGTGGAGGGCGCACTCCTGAAACTCTGTGCGGGGGGG
GAGGGAAAGGAGGAAGTGGATCGGGGTTTGTTTGTAACGGCTCGGGATTT
GGTCACCTTCCGATCGGCCATACGACCGGCGAAAGGGGTGATTGATTTGG
ACGTGATAGTGGCAGCGGGCGCGGAGCGACGGGCGTGGGCGGCGAAAAAG
GCGAAATTGAGCGCAGAAGAGGTAGAAGAGGTATTGAACGAGACCCTTGC
AGGGATGACGTTGATGAGGGGCTAACGAGGAGGGAGGGGAGGACGGGAAG
GAAGGAAGGAGGGCGAAGGAGGGCAAAGTAACGGGGGATGTATTGGCTGC
GAGTGCCAAGAAAGCTAAAAAAAAATTGTTAGGATTATCTCGAATAGTGT
CAGAACCTTCCGGTAGGTCAACGGATTTTCTAAATTTTGAATCGGGGGGG
ATTTCCCCCCTACCTTGTTAGCAAGAGACCTCCCTCTTGCTTCCCAAAGC
AAATTTTCTGCTCGCGTATCTTCCTTCTCACGATACATTTACC
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protein sequence of rna3374

>rna3374-protein ID=rna3374-protein|Name=rna3374|organism=Nannochloropsis gaditana|type=polypeptide|length=161bp
LSSASSSLPPQYPPSLPPSRPDYRLNFALHCGSVSGPVPAVPIFSRDALE
EQLEMMMRWALARSCRLEGGGGGGGRKGGREGRYMSLPRMCWWYHKDFAP
DLMAAIVPPAVGGEAAGGEAVDGGRGEGEREGGREGAEHEFEWGEGGREG
GVGGSILALLL
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mRNA from alignment at CM002461.1:253301..254067-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3374 ID=rna3374|Name=rna3374|organism=Nannochloropsis gaditana|type=mRNA|length=767bp|location=Sequence derived from alignment at CM002461.1:253301..254067- (Nannochloropsis gaditana)
CTCTCCTCCGCTTCCTCCTCCCTTCCACCCCAATACCCTCCCTCCCTCCC
TCCCTCCCGCCCCGACTACCGCCTCAACTTTGCTCTGCACTGCGGCTCGG
TCAGCGGGCCCGTCCCCGCCGTTCCGATCTTCTCCCGCGACGCCCTCGAG
GAGCAGTTGGAGATGATGATGCGATGGGCCCTGGCAAGAAGCTGCCGGTT
GGAGGGAGGAGGGGGAGGGGGAGGGAGGAAGGGAGGGAGGGAGGGTCGGT
ACATGAGCTTACCGAGGATGTGTTGGTGGTATCACAAAGATTTCGCGCCA
GATTTGATGGCCGCAATCGTCCCCCCGGCTGTCGGTGGAGAAGCAGCGGG
TGGTGAGGCGGTGGATGGAGGGAGGGGGGAGGGAGAGAGGGAAGGAGGGA
GGGAGGGGGCTGAGCATGAGTTTGAGTGGGGGGAGGGCGGGAGGGAGGGA
GGGGTGGGCGGTTCGATACTTGCCCTTCTCCTTTGAGACGCGTGCGCTGC
GACGTTTGGATGAAGAGGAAGAGATGAGGATGCGCGCACCGTAGAGCGAG
GAGGACGGCAAGAGGGAGGGGGAAGGGAGGGGGACGGGGAGAAGAGGGCT
GGGTAAATGTATCGTGAGAAGGAAGATACGCGAGCAGAAAATTTGCTTTG
GGAAGCAAGAGGGAGGTCTCTTGCTAACAAGGTAGGGGGGAAATCCCCCC
CGATTCAAAATTTAGAAAATCCGTTGACCTACCGGAAGGTTCTGACACTA
TTCGAGATAATCCTAAC
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Coding sequence (CDS) from alignment at CM002461.1:253301..254067-

>rna3374 ID=rna3374|Name=rna3374|organism=Nannochloropsis gaditana|type=CDS|length=486bp|location=Sequence derived from alignment at CM002461.1:253301..254067- (Nannochloropsis gaditana)
CTCTCCTCCGCTTCCTCCTCCCTTCCACCCCAATACCCTCCCTCCCTCCC
TCCCTCCCGCCCCGACTACCGCCTCAACTTTGCTCTGCACTGCGGCTCGG
TCAGCGGGCCCGTCCCCGCCGTTCCGATCTTCTCCCGCGACGCCCTCGAG
GAGCAGTTGGAGATGATGATGCGATGGGCCCTGGCAAGAAGCTGCCGGTT
GGAGGGAGGAGGGGGAGGGGGAGGGAGGAAGGGAGGGAGGGAGGGTCGGT
ACATGAGCTTACCGAGGATGTGTTGGTGGTATCACAAAGATTTCGCGCCA
GATTTGATGGCCGCAATCGTCCCCCCGGCTGTCGGTGGAGAAGCAGCGGG
TGGTGAGGCGGTGGATGGAGGGAGGGGGGAGGGAGAGAGGGAAGGAGGGA
GGGAGGGGGCTGAGCATGAGTTTGAGTGGGGGGAGGGCGGGAGGGAGGGA
GGGGTGGGCGGTTCGATACTTGCCCTTCTCCTTTGA
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Synonyms
Publications