rna3372, rna3372 (mRNA) Nannochloropsis gaditana

Overview
Namerna3372
Unique Namerna3372
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2622
Alignment locationCM002461.1:250373..251309 +

Link to JBrowse

Properties
Property NameValue
Productsplicing factor 3b subunit 3
Orig transcript idgnl|cribi|Naga_100453g1.8487.mrna
Orig protein idgnl|cribi|Naga_100453g1.8487
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:250373..251309 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100453g1gene3247Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3372rna3372-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27312.1cds3363Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3372 ID=rna3372|Name=rna3372|organism=Nannochloropsis gaditana|type=mRNA|length=2622bp
CCAAGGATATACTGAAGCAAAAGCTAATATATTGCTAGTGACACGACTGT
GACAGATCGGGTAAAAATGTTCATGCCAACACTCATTCCAGCCGTGCATG
ACTTCCCGAAGGATGTTATGCAATGCAATTGATACGAGGGGAGGTGGAAG
CTTCCTCCCGGCGTGACGTGAGGCCCAAAAAAGAAGCCCTCAAGTCCGAT
TCTAAGCATACAGGCATTCAGCGCGCATTGATTACTACGCTTCCTCAAGA
AATTCTGTATTATATATTTGATGGAAGGATTGATTCACTAATTTGGCATC
GTAAGACAAGCTGGGAGAAAACGTAGCGAGAAGAAATAACAAGCCGCTTC
CCCGCTGCTATGAAGGAAGGACCTACATAAGGCATCGAATTTGTTGCACA
CCATCAAGTAAATCGGTGGCAGGTGCTGTCCGATCTCCTTGATGCCAGAC
GTTTGACTTCGTTTGCATGGTCTTCGGTACGAGGGAATAGAATTGATGGT
TTTGGCTATTTTTTATGCCTCCTGTGGGCCCGCTGCAACTTCAGCTGTGC
GGGTCATTTCGTGTTGATGCCATCCATCGATTTCACGCACATTCACACAC
GACAGAGGAGAGTCTGTACATTACGAGGAAAAAAAACTGTGGGGGTGAAA
TGCCCGCCGGGGGCGAACCTTTGGGGGGAAATGAGGGTTACAGCCAGCTA
GTCCATTACCCCCCCGAGAGGGACCCCCCATCAAGCCTTGTTCACGACGA
GGAGGACGTGGGAAATGCGTGGCAGATGCCTTTCTCGCCGGTCGTGGACC
TGTCCCGCACCCCCGACCTTGGGGAAGACGAGGAGGAGGAGTGCCTCGGG
GAGGAGGGCCACACACCCCAGGAGCAAGGCAGCGACCTGCTCCTCAACCC
AGCCCCCCCCAAAGCCAACCAGGCCGCTATGTGGTCGTGTGTGGCGGTGT
TGGCGAACAACATGATGGGCGCGGGCATTTTGGGCCTGCCTTACGCCGTG
GCGCAAAGCGGGTGGCTCGTGGGAGGTAGTCTCTTGCTGCTTAGCGCCGT
CTTGAGCGGGCATGGCTTCGACCTCTTGACGCGCTCCGCCCGCACGATCC
ACCAACGGAGCCTTTCCGGCCCGCACGTCCCTCCTTCCCGGCCTCGTCCC
GCGTCCTTCTATACCCTTTGCCAGGTCTGTATGCCTCGGGGAACCGTCCT
GGTCGACGCGACCGTCGCCGTCAAATGCTTCGGTGTGGCCATCTCCTACC
TGGTGATTGTCGGCGACCTCCTCCCCGACGTGGTCAAGGAAGCCCGGCAA
CATCCCCTTGGTGGCCCGCCCGCGGACGTGTGGGAAGAACGCTGGGTCTG
GGTGACCCTGGCTTTCCTCCTCGTGGCCCCCCTGAGTTTCGCCAGCCACC
TCTCTGCCCTCCGCTTCACCAGCGGCATCTCCGTGGGCATCGTCCTTGTC
CTTACCCTGGTGGCCTTGCTCTACGCAGGGCAGGTCCTAAACCCCTGTCA
AGGGACCAGCTTTGGCGTGACCCGCCAGCCGACGCCGCCGCCAGCCATGG
CCTCGGTGGCGGCCACACTGGGTGCGGTCTATCCAGCCCGTTCCCCCCAC
AACCGCCCCCGTCCCTCCCGCCCCGTTCTCGCCCTTGCACCTCCGTGTCG
AGGGCCGGTCAAGATCGCTGGCACGGGGCCCGCAATCCTCCAAGTCTTGC
CCATCTTTGTGTATTCTTACACCGCCCATCAAAATTTTGGACTCTTGTGC
AACGAACTCGCCAACCCGACGCCGCGCCGGACCCGACAGACCATCATGGC
TGCCACGGGCCTCAGCCTCGGGGTTTACTTGACACTTGCCTTTGCTGCCT
ACCTCACGTACGGCGCCGCGCTTCAACGGGACCTCCTCCTCTCCTTCCCG
GCCTCCCTCCTCTCCACCTCCCTCCGTGCCGCCCTGTCCGTCCTCGTCAC
TTTTACCTACCCTCTCCAGGCACACCCAGCCCGCACCTGCCTTCTGGCCC
TCTGGGCGCTCTGGGCGGGGGAGGAGACCCACCGGTCTGGACGGCGTGAG
AGCTGCCCAGCGCCCCTTTCCCCCCCTTTGGTCGCCTTCCGTGCCACCTG
CGTGACCCTCCTCTTCCTCGCTGCCTCCCTCCTCATTGCCCTTTTGGTCC
AAGACCTCTCCCTTGTCTTGGAAATCGTGGGGGCTACGGGGTCCACCGCC
GTGTCGTACCTGCTCCCGGGCCTCCTCTATTTCTATGCGCATCCCTGGCC
GCATTTCCGTCGGAGACTGGCGCTGGGACAGGTCCTGGTGGGGCTCGCCG
TCATGATCACCTGTTTGGTCGCGATTGTGCTTCGTGAAAGATGACGGTGG
ACCGGCGTGACGAGGGCGGGGATACCAGAATGAGGAAAATGGTCGCGGGA
ATATGCATGGCCGAGACAAGCGGAGACGATGGCTCCGCTTGGCGGTGGGG
GGGAGAGAGTGACTCGGTGGGCGGGCAGGGGGCGTGCAAAGGACGTCAGG
GTTGGGGCATGACAACTGAAATGTGACAAAGAAGAAGTGTACAAAGGTCC
GAGTGCCTGACTGTGTCTGACACGCGTCTTGCTCTTGGTTGGACGTGTCA
CATCCACGCGTCAACCTGCATG
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protein sequence of rna3372

>rna3372-protein ID=rna3372-protein|Name=rna3372|organism=Nannochloropsis gaditana|type=polypeptide|length=210bp
MNLVAYTLKPPTGVSRALVGCFLEGEEGEEEEELLALVRGVGTVEIVQVL
TPPPPSPGTNGKEGAQEAKEWEGNGAILHTLCSQPTFSAIRAWACLRPVG
GTKDLLAVTSDAGMLALVELVARPANTASHAVAYHLQRIASLSLGTSGCP
RSVPGQYVAADPSGRAVMVSSIDGHLTCAVVLRNAATGAIELRRSRVGGD
LGKPADPFWS
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mRNA from alignment at CM002461.1:250373..251309+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3372 ID=rna3372|Name=rna3372|organism=Nannochloropsis gaditana|type=mRNA|length=937bp|location=Sequence derived from alignment at CM002461.1:250373..251309+ (Nannochloropsis gaditana)
ATGAATCTAGTGGCTTACACACTCAAGCCTCCAACGGGCGTGAGTCGGGC
GCTGGTGGGCTGCttcttggaaggggaggaaggggaagaggaagaggaac
tCTTGGCCTTGGTCCGTGGAGTTGGTACCGTGGAAATCGTCCAGGTAttg
acccctccccctccctcccctggcaccaacgggaaggaaggagcgcaaga
ggcgaaggaatgggaaggaaaCGGGGCAATTCTCCACACCCTCTGCTCCC
AGcccaccttctccgccatcCGGGCATGGGCATGCCTGCGGCCTGTAGGC
GGCACCAAGGACCTGTTGGCCGTGACCTCGGACGCAGGCATGCTCGCTTT
GGTGGAACTGGTCGCCCGCCCTGCGAACACAGCCTCCCATGCAGTCGCTT
ACCACCTGCAACGCATCGCCTCCTTGTCACTGGGTACATCCGGGTGTCCT
CGGAGCGTGCCCGGGCAATACGTCGCCGCCGACCCGAGTGGGCGGGCCGT
AATGGTCAGCTCCATTGACGGGCATCTTACGTGCGCCGTGGTGCTGCGAA
ACGCGGCCACGGGGGCAATTGAGCTTCGACGGAGCCGTGTGGGCGGGGAT
CTGGGGAAAGTGAGTGGGCAAGCCACGGTCTTCGACGCGGGGGGCGCGCA
CGTCGGGGCGGggcctccccgcttcctcctcttggtcgggggggacgagg
cggacggaGCGCGGGCCCGAGAACGCGCccgggccaaggaggaggatgga
ttGAGCTTGCCCGAGGAGAGTGTGAAGCACGTGCTCGTCCTGGAGTTGGA
CCTGGAGACCAACACGTTGGCCCCGGCGGGGCGActccctgtctccgcca
CCGGctcggccctccttcccctccctctccccctccctccctctcccccg
ccttcccctcaaGCCTGCGGACCCTTTCTGGTCCTGA
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Coding sequence (CDS) from alignment at CM002461.1:250373..251309+

>rna3372 ID=rna3372|Name=rna3372|organism=Nannochloropsis gaditana|type=CDS|length=1266bp|location=Sequence derived from alignment at CM002461.1:250373..251309+ (Nannochloropsis gaditana)
ATGAATCTAGTGGCTTACACACTCAAGCCTCCAACGGGCGTGAGTCGGGC
GCTGGTGGGCTGCttcttggaaggggaggaaggggaagaggaagaggaac
tCTTGGCCTTGGTCCGTGGAGTTGGTACCGTGGAAATCGTCCAGGTAttg
acccctccccctccctcccctggcaccaacgggaaggaaggagcgcaaga
ggcgaaggaatgggaaggaaaCGGGGCAATTCTCCACACCCTCTGCTCCC
AGcccaccttctccgccatcCGGGCATGGGCATGCCTGCGGCCTGTAGGC
GGCACCAAGGACCTGTTGGCCGTGACCTCGGACGCAGGCATGCTCGCTTT
GGTGGAACTGGTCGCCCGCCCTGCGAACACAGCCTCCCATGCAGTCGCTT
ACCACCTGCAACGCATCGCCTCCTTGTCACTGGGTACATCCGGGTGTCCT
CGGAGCGTGCCCGGGCAATACGTCGCCGCCGACCCGAGTGGGCGGGCCGT
AATGGTCAGCTCCATTGACGGGCATCTTACGTGCGCCGTGGTGCTGCGAA
ACGCGGCCACGGGGGCAATTGAGCTTCGACGGAGCCGTGTGGGCGGGGAT
CTGGGGAAACCTGCGGACCCTTTCTGGTCCTGAATGAATCTAGTGGCTTA
CACACTCAAGCCTCCAACGGGCGTGAGTCGGGCGCTGGTGGGCTGCttct
tggaaggggaggaaggggaagaggaagaggaactCTTGGCCTTGGTCCGT
GGAGTTGGTACCGTGGAAATCGTCCAGGTAttgacccctccccctccctc
ccctggcaccaacgggaaggaaggagcgcaagaggcgaaggaatgggaag
gaaaCGGGGCAATTCTCCACACCCTCTGCTCCCAGcccaccttctccgcc
atcCGGGCATGGGCATGCCTGCGGCCTGTAGGCGGCACCAAGGACCTGTT
GGCCGTGACCTCGGACGCAGGCATGCTCGCTTTGGTGGAACTGGTCGCCC
GCCCTGCGAACACAGCCTCCCATGCAGTCGCTTACCACCTGCAACGCATC
GCCTCCTTGTCACTGGGTACATCCGGGTGTCCTCGGAGCGTGCCCGGGCA
ATACGTCGCCGCCGACCCGAGTGGGCGGGCCGTAATGGTCAGCTCCATTG
ACGGGCATCTTACGTGCGCCGTGGTGCTGCGAAACGCGGCCACGGGGGCA
ATTGAGCTTCGACGGAGCCGTGTGGGCGGGGATCTGGGGAAACCTGCGGA
CCCTTTCTGGTCCTGA
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Synonyms
Publications