EWM27312.1, cds3363 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27312.1 vs. NCBI_GenBank
Match: gi|585109509|gb|EWM27312.1| (splicing factor 3b subunit 3 [Nannochloropsis gaditana]) HSP 1 Score: 422.935 bits (1086), Expect = 1.174e-149 Identity = 210/210 (100.00%), Postives = 210/210 (100.00%), Query Frame = 0
Query: 1 MNLVAYTLKPPTGVSRALVGCFLEGEEGEEEEELLALVRGVGTVEIVQVLTPPPPSPGTNGKEGAQEAKEWEGNGAILHTLCSQPTFSAIRAWACLRPVGGTKDLLAVTSDAGMLALVELVARPANTASHAVAYHLQRIASLSLGTSGCPRSVPGQYVAADPSGRAVMVSSIDGHLTCAVVLRNAATGAIELRRSRVGGDLGKPADPFWS 210
MNLVAYTLKPPTGVSRALVGCFLEGEEGEEEEELLALVRGVGTVEIVQVLTPPPPSPGTNGKEGAQEAKEWEGNGAILHTLCSQPTFSAIRAWACLRPVGGTKDLLAVTSDAGMLALVELVARPANTASHAVAYHLQRIASLSLGTSGCPRSVPGQYVAADPSGRAVMVSSIDGHLTCAVVLRNAATGAIELRRSRVGGDLGKPADPFWS
Sbjct: 1 MNLVAYTLKPPTGVSRALVGCFLEGEEGEEEEELLALVRGVGTVEIVQVLTPPPPSPGTNGKEGAQEAKEWEGNGAILHTLCSQPTFSAIRAWACLRPVGGTKDLLAVTSDAGMLALVELVARPANTASHAVAYHLQRIASLSLGTSGCPRSVPGQYVAADPSGRAVMVSSIDGHLTCAVVLRNAATGAIELRRSRVGGDLGKPADPFWS 210
BLAST of EWM27312.1 vs. NCBI_GenBank
Match: gi|694646730|ref|XP_009480682.1| (PREDICTED: splicing factor 3B subunit 3-like, partial [Pelecanus crispus]) HSP 1 Score: 93.5893 bits (231), Expect = 5.226e-20 Identity = 61/186 (32.80%), Postives = 94/186 (50.54%), Query Frame = 0
Query: 1 MNLVAYTLKPPTGVSRALVGCFLEGEEGEEEEELLALVRGVGTVEIVQVLTPPPPSPGTNGKEGAQEAKEWEGNGAILHTLCSQPTFSAIRAWACLRPVGGTKDLLAVTSDAGMLALVELVARPANTASHAVAYHLQRIASLSLGTSGCPRSVPGQYVAADPSGRAVMVSSIDGHLTCAVVLRNAA 186
M L TL+ TG+S A+ G F G +++E++ + RG +I+++L P P N +HTL + F IR+ R GGTKD + V SD+G + ++E +P+ ++I + G SGC R VPGQY+A DP GRAVM+S+I+ ++ R+AA
Sbjct: 1 MFLYNLTLQRATGISYAIHGNF----SGTKQQEIV-VSRG----KILELLRPDP-------------------NTGKVHTLLTVEVFGVIRSLMAFRLTGGTKDYIVVGSDSGRIVILEY--QPSKNV-------FEKIHQETFGKSGCRRIVPGQYLAVDPKGRAVMISAIEKQKLVYILNRDAA 149
BLAST of EWM27312.1 vs. NCBI_GenBank
Match: gi|677461989|gb|KFQ51403.1| (Splicing factor 3B subunit 3, partial [Pelecanus crispus]) HSP 1 Score: 93.5893 bits (231), Expect = 5.625e-20 Identity = 61/186 (32.80%), Postives = 94/186 (50.54%), Query Frame = 0
Query: 1 MNLVAYTLKPPTGVSRALVGCFLEGEEGEEEEELLALVRGVGTVEIVQVLTPPPPSPGTNGKEGAQEAKEWEGNGAILHTLCSQPTFSAIRAWACLRPVGGTKDLLAVTSDAGMLALVELVARPANTASHAVAYHLQRIASLSLGTSGCPRSVPGQYVAADPSGRAVMVSSIDGHLTCAVVLRNAA 186
M L TL+ TG+S A+ G F G +++E++ + RG +I+++L P P N +HTL + F IR+ R GGTKD + V SD+G + ++E +P+ ++I + G SGC R VPGQY+A DP GRAVM+S+I+ ++ R+AA
Sbjct: 1 MFLYNLTLQRATGISYAIHGNF----SGTKQQEIV-VSRG----KILELLRPDP-------------------NTGKVHTLLTVEVFGVIRSLMAFRLTGGTKDYIVVGSDSGRIVILEY--QPSKNV-------FEKIHQETFGKSGCRRIVPGQYLAVDPKGRAVMISAIEKQKLVYILNRDAA 149
BLAST of EWM27312.1 vs. NCBI_GenBank
Match: gi|677222963|gb|KFP50688.1| (Splicing factor 3B subunit 3, partial [Cathartes aura]) HSP 1 Score: 93.2041 bits (230), Expect = 1.379e-19 Identity = 61/186 (32.80%), Postives = 94/186 (50.54%), Query Frame = 0
Query: 1 MNLVAYTLKPPTGVSRALVGCFLEGEEGEEEEELLALVRGVGTVEIVQVLTPPPPSPGTNGKEGAQEAKEWEGNGAILHTLCSQPTFSAIRAWACLRPVGGTKDLLAVTSDAGMLALVELVARPANTASHAVAYHLQRIASLSLGTSGCPRSVPGQYVAADPSGRAVMVSSIDGHLTCAVVLRNAA 186
M L TL+ TG+S A+ G F G +++E++ + RG +I+++L P P N +HTL + F IR+ R GGTKD + V SD+G + ++E +P+ ++I + G SGC R VPGQY+A DP GRAVM+S+I+ ++ R+AA
Sbjct: 1 MFLYNLTLQRATGISYAIHGNF----SGTKQQEIV-VSRG----KILELLRPDP-------------------NTGKVHTLLTVEVFGVIRSLMAFRLTGGTKDYIVVGSDSGRIVILEY--QPSKNV-------FEKIHQETFGKSGCRRIVPGQYLAVDPKGRAVMISAIEKQKLVYILNRDAA 149
BLAST of EWM27312.1 vs. NCBI_GenBank
Match: gi|119572188|gb|EAW51803.1| (splicing factor 3b, subunit 3, 130kDa, isoform CRA_a [Homo sapiens]) HSP 1 Score: 90.1225 bits (222), Expect = 2.645e-18 Identity = 60/186 (32.26%), Postives = 94/186 (50.54%), Query Frame = 0
Query: 1 MNLVAYTLKPPTGVSRALVGCFLEGEEGEEEEELLALVRGVGTVEIVQVLTPPPPSPGTNGKEGAQEAKEWEGNGAILHTLCSQPTFSAIRAWACLRPVGGTKDLLAVTSDAGMLALVELVARPANTASHAVAYHLQRIASLSLGTSGCPRSVPGQYVAADPSGRAVMVSSIDGHLTCAVVLRNAA 186
M L TL+ TG+S A+ G F G +++E++ + RG +I+++L P P N +HTL + F IR+ R GGTKD + V SD+G + ++E +P+ ++I + G SGC R VPGQ++A DP GRAVM+S+I+ ++ R+AA
Sbjct: 1 MFLYNLTLQRATGISFAIHGNF----SGTKQQEIV-VSRG----KILELLRPDP-------------------NTGKVHTLLTVEVFGVIRSLMAFRLTGGTKDYIVVGSDSGRIVILEY--QPSKNM-------FEKIHQETFGKSGCRRIVPGQFLAVDPKGRAVMISAIEKQKLVYILNRDAA 149
BLAST of EWM27312.1 vs. NCBI_GenBank
Match: gi|14602539|gb|AAH09780.1| (SF3B3 protein [Homo sapiens] >gi|325464197|gb|ADZ15869.1| splicing factor 3b, subunit 3, 130kDa, partial [synthetic construct]) HSP 1 Score: 88.9669 bits (219), Expect = 7.129e-18 Identity = 60/186 (32.26%), Postives = 94/186 (50.54%), Query Frame = 0
Query: 1 MNLVAYTLKPPTGVSRALVGCFLEGEEGEEEEELLALVRGVGTVEIVQVLTPPPPSPGTNGKEGAQEAKEWEGNGAILHTLCSQPTFSAIRAWACLRPVGGTKDLLAVTSDAGMLALVELVARPANTASHAVAYHLQRIASLSLGTSGCPRSVPGQYVAADPSGRAVMVSSIDGHLTCAVVLRNAA 186
M L TL+ TG+S A+ G F G +++E++ + RG +I+++L P P N +HTL + F IR+ R GGTKD + V SD+G + ++E +P+ ++I + G SGC R VPGQ++A DP GRAVM+S+I+ ++ R+AA
Sbjct: 1 MFLYNLTLQRATGISFAIHGNF----SGTKQQEIV-VSRG----KILELLRPDP-------------------NTGKVHTLLTVEVFGVIRSLMAFRLTGGTKDYIVVGSDSGRIVILEY--QPSKNM-------FEKIHQETFGKSGCRRIVPGQFLAVDPKGRAVMISAIEKQKLVYILNRDAA 149
BLAST of EWM27312.1 vs. NCBI_GenBank
Match: gi|678206590|gb|KFV73568.1| (Splicing factor 3B subunit 3 [Struthio camelus australis]) HSP 1 Score: 91.2781 bits (225), Expect = 8.358e-18 Identity = 61/186 (32.80%), Postives = 94/186 (50.54%), Query Frame = 0
Query: 1 MNLVAYTLKPPTGVSRALVGCFLEGEEGEEEEELLALVRGVGTVEIVQVLTPPPPSPGTNGKEGAQEAKEWEGNGAILHTLCSQPTFSAIRAWACLRPVGGTKDLLAVTSDAGMLALVELVARPANTASHAVAYHLQRIASLSLGTSGCPRSVPGQYVAADPSGRAVMVSSIDGHLTCAVVLRNAA 186
M L TL+ TG+S A+ G F G +++E++ + RG +I+++L P P N +HTL + F IR+ R GGTKD + V SD+G + ++E +P+ ++I + G SGC R VPGQY+A DP GRAVM+S+I+ ++ R+AA
Sbjct: 1 MFLYNLTLQRATGISYAIHGNF----SGTKQQEIV-VSRG----KILELLRPDP-------------------NTGKVHTLLTVEVFGVIRSLMAFRLTGGTKDYIVVGSDSGRIVILEY--QPSKNV-------FEKIHQETFGKSGCRRIVPGQYLAVDPKGRAVMISAIEKQKLVYILNRDAA 149
BLAST of EWM27312.1 vs. NCBI_GenBank
Match: gi|678149296|gb|KFV18447.1| (Splicing factor 3B subunit 3 [Tauraco erythrolophus] >gi|678179830|gb|KFV47552.1| Splicing factor 3B subunit 3 [Gavia stellata] >gi|678188815|gb|KFV56537.1| Splicing factor 3B subunit 3 [Tyto alba]) HSP 1 Score: 91.2781 bits (225), Expect = 8.521e-18 Identity = 61/186 (32.80%), Postives = 94/186 (50.54%), Query Frame = 0
Query: 1 MNLVAYTLKPPTGVSRALVGCFLEGEEGEEEEELLALVRGVGTVEIVQVLTPPPPSPGTNGKEGAQEAKEWEGNGAILHTLCSQPTFSAIRAWACLRPVGGTKDLLAVTSDAGMLALVELVARPANTASHAVAYHLQRIASLSLGTSGCPRSVPGQYVAADPSGRAVMVSSIDGHLTCAVVLRNAA 186
M L TL+ TG+S A+ G F G +++E++ + RG +I+++L P P N +HTL + F IR+ R GGTKD + V SD+G + ++E +P+ ++I + G SGC R VPGQY+A DP GRAVM+S+I+ ++ R+AA
Sbjct: 1 MFLYNLTLQRATGISYAIHGNF----SGTKQQEIV-VSRG----KILELLRPDP-------------------NTGKVHTLLTVEVFGVIRSLMAFRLTGGTKDYIVVGSDSGRIVILEY--QPSKNV-------FEKIHQETFGKSGCRRIVPGQYLAVDPKGRAVMISAIEKQKLVYILNRDAA 149
BLAST of EWM27312.1 vs. NCBI_GenBank
Match: gi|1201832264|ref|XP_021264004.1| (splicing factor 3B subunit 3 [Numida meleagris]) HSP 1 Score: 91.2781 bits (225), Expect = 8.678e-18 Identity = 61/186 (32.80%), Postives = 94/186 (50.54%), Query Frame = 0
Query: 1 MNLVAYTLKPPTGVSRALVGCFLEGEEGEEEEELLALVRGVGTVEIVQVLTPPPPSPGTNGKEGAQEAKEWEGNGAILHTLCSQPTFSAIRAWACLRPVGGTKDLLAVTSDAGMLALVELVARPANTASHAVAYHLQRIASLSLGTSGCPRSVPGQYVAADPSGRAVMVSSIDGHLTCAVVLRNAA 186
M L TL+ TG+S A+ G F G +++E++ + RG +I+++L P P N +HTL + F IR+ R GGTKD + V SD+G + ++E +P+ ++I + G SGC R VPGQY+A DP GRAVM+S+I+ ++ R+AA
Sbjct: 1 MFLYNLTLQRATGISYAIHGNF----SGTKQQEIV-VSRG----KILELLRPDP-------------------NTGKVHTLLTVEVFGVIRSLMAFRLTGGTKDYIVVGSDSGRIVILEY--QPSKNV-------FEKIHQETFGKSGCRRIVPGQYLAVDPKGRAVMISAIEKQKLVYILNRDAA 149
BLAST of EWM27312.1 vs. NCBI_GenBank
Match: gi|706144543|ref|XP_010204529.1| (PREDICTED: splicing factor 3B subunit 3 [Colius striatus]) HSP 1 Score: 91.2781 bits (225), Expect = 8.678e-18 Identity = 61/186 (32.80%), Postives = 94/186 (50.54%), Query Frame = 0
Query: 1 MNLVAYTLKPPTGVSRALVGCFLEGEEGEEEEELLALVRGVGTVEIVQVLTPPPPSPGTNGKEGAQEAKEWEGNGAILHTLCSQPTFSAIRAWACLRPVGGTKDLLAVTSDAGMLALVELVARPANTASHAVAYHLQRIASLSLGTSGCPRSVPGQYVAADPSGRAVMVSSIDGHLTCAVVLRNAA 186
M L TL+ TG+S A+ G F G +++E++ + RG +I+++L P P N +HTL + F IR+ R GGTKD + V SD+G + ++E +P+ ++I + G SGC R VPGQY+A DP GRAVM+S+I+ ++ R+AA
Sbjct: 1 MFLYNLTLQRATGISYAIHGNF----SGTKQQEIV-VSRG----KILELLRPDP-------------------NTGKVHTLLTVEVFGVIRSLMAFRLTGGTKDYIVVGSDSGRIVILEY--QPSKNV-------FEKIHQETFGKSGCRRIVPGQYLAVDPKGRAVMISAIEKQKLVYILNRDAA 149 The following BLAST results are available for this feature:
BLAST of EWM27312.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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