EWM27312.1, cds3363 (CDS) Nannochloropsis gaditana

Overview
NameEWM27312.1
Unique Namecds3363
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:250373..250981 +
Alignment locationCM002461.1:251286..251309 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27312.1
Productsplicing factor 3b subunit 3
Orig transcript idgnl|cribi|Naga_100453g1.8487.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:250373..250981 +
CM002461.1supercontigCM002461.1:251286..251309 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Homology
BLAST of EWM27312.1 vs. NCBI_GenBank
Match: gi|585109509|gb|EWM27312.1| (splicing factor 3b subunit 3 [Nannochloropsis gaditana])

HSP 1 Score: 422.935 bits (1086), Expect = 1.174e-149
Identity = 210/210 (100.00%), Postives = 210/210 (100.00%), Query Frame = 0
Query:    1 MNLVAYTLKPPTGVSRALVGCFLEGEEGEEEEELLALVRGVGTVEIVQVLTPPPPSPGTNGKEGAQEAKEWEGNGAILHTLCSQPTFSAIRAWACLRPVGGTKDLLAVTSDAGMLALVELVARPANTASHAVAYHLQRIASLSLGTSGCPRSVPGQYVAADPSGRAVMVSSIDGHLTCAVVLRNAATGAIELRRSRVGGDLGKPADPFWS 210
            MNLVAYTLKPPTGVSRALVGCFLEGEEGEEEEELLALVRGVGTVEIVQVLTPPPPSPGTNGKEGAQEAKEWEGNGAILHTLCSQPTFSAIRAWACLRPVGGTKDLLAVTSDAGMLALVELVARPANTASHAVAYHLQRIASLSLGTSGCPRSVPGQYVAADPSGRAVMVSSIDGHLTCAVVLRNAATGAIELRRSRVGGDLGKPADPFWS
Sbjct:    1 MNLVAYTLKPPTGVSRALVGCFLEGEEGEEEEELLALVRGVGTVEIVQVLTPPPPSPGTNGKEGAQEAKEWEGNGAILHTLCSQPTFSAIRAWACLRPVGGTKDLLAVTSDAGMLALVELVARPANTASHAVAYHLQRIASLSLGTSGCPRSVPGQYVAADPSGRAVMVSSIDGHLTCAVVLRNAATGAIELRRSRVGGDLGKPADPFWS 210          
BLAST of EWM27312.1 vs. NCBI_GenBank
Match: gi|694646730|ref|XP_009480682.1| (PREDICTED: splicing factor 3B subunit 3-like, partial [Pelecanus crispus])

HSP 1 Score: 93.5893 bits (231), Expect = 5.226e-20
Identity = 61/186 (32.80%), Postives = 94/186 (50.54%), Query Frame = 0
Query:    1 MNLVAYTLKPPTGVSRALVGCFLEGEEGEEEEELLALVRGVGTVEIVQVLTPPPPSPGTNGKEGAQEAKEWEGNGAILHTLCSQPTFSAIRAWACLRPVGGTKDLLAVTSDAGMLALVELVARPANTASHAVAYHLQRIASLSLGTSGCPRSVPGQYVAADPSGRAVMVSSIDGHLTCAVVLRNAA 186
            M L   TL+  TG+S A+ G F     G +++E++ + RG    +I+++L P P                   N   +HTL +   F  IR+    R  GGTKD + V SD+G + ++E   +P+           ++I   + G SGC R VPGQY+A DP GRAVM+S+I+      ++ R+AA
Sbjct:    1 MFLYNLTLQRATGISYAIHGNF----SGTKQQEIV-VSRG----KILELLRPDP-------------------NTGKVHTLLTVEVFGVIRSLMAFRLTGGTKDYIVVGSDSGRIVILEY--QPSKNV-------FEKIHQETFGKSGCRRIVPGQYLAVDPKGRAVMISAIEKQKLVYILNRDAA 149          
BLAST of EWM27312.1 vs. NCBI_GenBank
Match: gi|677461989|gb|KFQ51403.1| (Splicing factor 3B subunit 3, partial [Pelecanus crispus])

HSP 1 Score: 93.5893 bits (231), Expect = 5.625e-20
Identity = 61/186 (32.80%), Postives = 94/186 (50.54%), Query Frame = 0
Query:    1 MNLVAYTLKPPTGVSRALVGCFLEGEEGEEEEELLALVRGVGTVEIVQVLTPPPPSPGTNGKEGAQEAKEWEGNGAILHTLCSQPTFSAIRAWACLRPVGGTKDLLAVTSDAGMLALVELVARPANTASHAVAYHLQRIASLSLGTSGCPRSVPGQYVAADPSGRAVMVSSIDGHLTCAVVLRNAA 186
            M L   TL+  TG+S A+ G F     G +++E++ + RG    +I+++L P P                   N   +HTL +   F  IR+    R  GGTKD + V SD+G + ++E   +P+           ++I   + G SGC R VPGQY+A DP GRAVM+S+I+      ++ R+AA
Sbjct:    1 MFLYNLTLQRATGISYAIHGNF----SGTKQQEIV-VSRG----KILELLRPDP-------------------NTGKVHTLLTVEVFGVIRSLMAFRLTGGTKDYIVVGSDSGRIVILEY--QPSKNV-------FEKIHQETFGKSGCRRIVPGQYLAVDPKGRAVMISAIEKQKLVYILNRDAA 149          
BLAST of EWM27312.1 vs. NCBI_GenBank
Match: gi|677222963|gb|KFP50688.1| (Splicing factor 3B subunit 3, partial [Cathartes aura])

HSP 1 Score: 93.2041 bits (230), Expect = 1.379e-19
Identity = 61/186 (32.80%), Postives = 94/186 (50.54%), Query Frame = 0
Query:    1 MNLVAYTLKPPTGVSRALVGCFLEGEEGEEEEELLALVRGVGTVEIVQVLTPPPPSPGTNGKEGAQEAKEWEGNGAILHTLCSQPTFSAIRAWACLRPVGGTKDLLAVTSDAGMLALVELVARPANTASHAVAYHLQRIASLSLGTSGCPRSVPGQYVAADPSGRAVMVSSIDGHLTCAVVLRNAA 186
            M L   TL+  TG+S A+ G F     G +++E++ + RG    +I+++L P P                   N   +HTL +   F  IR+    R  GGTKD + V SD+G + ++E   +P+           ++I   + G SGC R VPGQY+A DP GRAVM+S+I+      ++ R+AA
Sbjct:    1 MFLYNLTLQRATGISYAIHGNF----SGTKQQEIV-VSRG----KILELLRPDP-------------------NTGKVHTLLTVEVFGVIRSLMAFRLTGGTKDYIVVGSDSGRIVILEY--QPSKNV-------FEKIHQETFGKSGCRRIVPGQYLAVDPKGRAVMISAIEKQKLVYILNRDAA 149          
BLAST of EWM27312.1 vs. NCBI_GenBank
Match: gi|119572188|gb|EAW51803.1| (splicing factor 3b, subunit 3, 130kDa, isoform CRA_a [Homo sapiens])

HSP 1 Score: 90.1225 bits (222), Expect = 2.645e-18
Identity = 60/186 (32.26%), Postives = 94/186 (50.54%), Query Frame = 0
Query:    1 MNLVAYTLKPPTGVSRALVGCFLEGEEGEEEEELLALVRGVGTVEIVQVLTPPPPSPGTNGKEGAQEAKEWEGNGAILHTLCSQPTFSAIRAWACLRPVGGTKDLLAVTSDAGMLALVELVARPANTASHAVAYHLQRIASLSLGTSGCPRSVPGQYVAADPSGRAVMVSSIDGHLTCAVVLRNAA 186
            M L   TL+  TG+S A+ G F     G +++E++ + RG    +I+++L P P                   N   +HTL +   F  IR+    R  GGTKD + V SD+G + ++E   +P+           ++I   + G SGC R VPGQ++A DP GRAVM+S+I+      ++ R+AA
Sbjct:    1 MFLYNLTLQRATGISFAIHGNF----SGTKQQEIV-VSRG----KILELLRPDP-------------------NTGKVHTLLTVEVFGVIRSLMAFRLTGGTKDYIVVGSDSGRIVILEY--QPSKNM-------FEKIHQETFGKSGCRRIVPGQFLAVDPKGRAVMISAIEKQKLVYILNRDAA 149          
BLAST of EWM27312.1 vs. NCBI_GenBank
Match: gi|14602539|gb|AAH09780.1| (SF3B3 protein [Homo sapiens] >gi|325464197|gb|ADZ15869.1| splicing factor 3b, subunit 3, 130kDa, partial [synthetic construct])

HSP 1 Score: 88.9669 bits (219), Expect = 7.129e-18
Identity = 60/186 (32.26%), Postives = 94/186 (50.54%), Query Frame = 0
Query:    1 MNLVAYTLKPPTGVSRALVGCFLEGEEGEEEEELLALVRGVGTVEIVQVLTPPPPSPGTNGKEGAQEAKEWEGNGAILHTLCSQPTFSAIRAWACLRPVGGTKDLLAVTSDAGMLALVELVARPANTASHAVAYHLQRIASLSLGTSGCPRSVPGQYVAADPSGRAVMVSSIDGHLTCAVVLRNAA 186
            M L   TL+  TG+S A+ G F     G +++E++ + RG    +I+++L P P                   N   +HTL +   F  IR+    R  GGTKD + V SD+G + ++E   +P+           ++I   + G SGC R VPGQ++A DP GRAVM+S+I+      ++ R+AA
Sbjct:    1 MFLYNLTLQRATGISFAIHGNF----SGTKQQEIV-VSRG----KILELLRPDP-------------------NTGKVHTLLTVEVFGVIRSLMAFRLTGGTKDYIVVGSDSGRIVILEY--QPSKNM-------FEKIHQETFGKSGCRRIVPGQFLAVDPKGRAVMISAIEKQKLVYILNRDAA 149          
BLAST of EWM27312.1 vs. NCBI_GenBank
Match: gi|678206590|gb|KFV73568.1| (Splicing factor 3B subunit 3 [Struthio camelus australis])

HSP 1 Score: 91.2781 bits (225), Expect = 8.358e-18
Identity = 61/186 (32.80%), Postives = 94/186 (50.54%), Query Frame = 0
Query:    1 MNLVAYTLKPPTGVSRALVGCFLEGEEGEEEEELLALVRGVGTVEIVQVLTPPPPSPGTNGKEGAQEAKEWEGNGAILHTLCSQPTFSAIRAWACLRPVGGTKDLLAVTSDAGMLALVELVARPANTASHAVAYHLQRIASLSLGTSGCPRSVPGQYVAADPSGRAVMVSSIDGHLTCAVVLRNAA 186
            M L   TL+  TG+S A+ G F     G +++E++ + RG    +I+++L P P                   N   +HTL +   F  IR+    R  GGTKD + V SD+G + ++E   +P+           ++I   + G SGC R VPGQY+A DP GRAVM+S+I+      ++ R+AA
Sbjct:    1 MFLYNLTLQRATGISYAIHGNF----SGTKQQEIV-VSRG----KILELLRPDP-------------------NTGKVHTLLTVEVFGVIRSLMAFRLTGGTKDYIVVGSDSGRIVILEY--QPSKNV-------FEKIHQETFGKSGCRRIVPGQYLAVDPKGRAVMISAIEKQKLVYILNRDAA 149          
BLAST of EWM27312.1 vs. NCBI_GenBank
Match: gi|678149296|gb|KFV18447.1| (Splicing factor 3B subunit 3 [Tauraco erythrolophus] >gi|678179830|gb|KFV47552.1| Splicing factor 3B subunit 3 [Gavia stellata] >gi|678188815|gb|KFV56537.1| Splicing factor 3B subunit 3 [Tyto alba])

HSP 1 Score: 91.2781 bits (225), Expect = 8.521e-18
Identity = 61/186 (32.80%), Postives = 94/186 (50.54%), Query Frame = 0
Query:    1 MNLVAYTLKPPTGVSRALVGCFLEGEEGEEEEELLALVRGVGTVEIVQVLTPPPPSPGTNGKEGAQEAKEWEGNGAILHTLCSQPTFSAIRAWACLRPVGGTKDLLAVTSDAGMLALVELVARPANTASHAVAYHLQRIASLSLGTSGCPRSVPGQYVAADPSGRAVMVSSIDGHLTCAVVLRNAA 186
            M L   TL+  TG+S A+ G F     G +++E++ + RG    +I+++L P P                   N   +HTL +   F  IR+    R  GGTKD + V SD+G + ++E   +P+           ++I   + G SGC R VPGQY+A DP GRAVM+S+I+      ++ R+AA
Sbjct:    1 MFLYNLTLQRATGISYAIHGNF----SGTKQQEIV-VSRG----KILELLRPDP-------------------NTGKVHTLLTVEVFGVIRSLMAFRLTGGTKDYIVVGSDSGRIVILEY--QPSKNV-------FEKIHQETFGKSGCRRIVPGQYLAVDPKGRAVMISAIEKQKLVYILNRDAA 149          
BLAST of EWM27312.1 vs. NCBI_GenBank
Match: gi|1201832264|ref|XP_021264004.1| (splicing factor 3B subunit 3 [Numida meleagris])

HSP 1 Score: 91.2781 bits (225), Expect = 8.678e-18
Identity = 61/186 (32.80%), Postives = 94/186 (50.54%), Query Frame = 0
Query:    1 MNLVAYTLKPPTGVSRALVGCFLEGEEGEEEEELLALVRGVGTVEIVQVLTPPPPSPGTNGKEGAQEAKEWEGNGAILHTLCSQPTFSAIRAWACLRPVGGTKDLLAVTSDAGMLALVELVARPANTASHAVAYHLQRIASLSLGTSGCPRSVPGQYVAADPSGRAVMVSSIDGHLTCAVVLRNAA 186
            M L   TL+  TG+S A+ G F     G +++E++ + RG    +I+++L P P                   N   +HTL +   F  IR+    R  GGTKD + V SD+G + ++E   +P+           ++I   + G SGC R VPGQY+A DP GRAVM+S+I+      ++ R+AA
Sbjct:    1 MFLYNLTLQRATGISYAIHGNF----SGTKQQEIV-VSRG----KILELLRPDP-------------------NTGKVHTLLTVEVFGVIRSLMAFRLTGGTKDYIVVGSDSGRIVILEY--QPSKNV-------FEKIHQETFGKSGCRRIVPGQYLAVDPKGRAVMISAIEKQKLVYILNRDAA 149          
BLAST of EWM27312.1 vs. NCBI_GenBank
Match: gi|706144543|ref|XP_010204529.1| (PREDICTED: splicing factor 3B subunit 3 [Colius striatus])

HSP 1 Score: 91.2781 bits (225), Expect = 8.678e-18
Identity = 61/186 (32.80%), Postives = 94/186 (50.54%), Query Frame = 0
Query:    1 MNLVAYTLKPPTGVSRALVGCFLEGEEGEEEEELLALVRGVGTVEIVQVLTPPPPSPGTNGKEGAQEAKEWEGNGAILHTLCSQPTFSAIRAWACLRPVGGTKDLLAVTSDAGMLALVELVARPANTASHAVAYHLQRIASLSLGTSGCPRSVPGQYVAADPSGRAVMVSSIDGHLTCAVVLRNAA 186
            M L   TL+  TG+S A+ G F     G +++E++ + RG    +I+++L P P                   N   +HTL +   F  IR+    R  GGTKD + V SD+G + ++E   +P+           ++I   + G SGC R VPGQY+A DP GRAVM+S+I+      ++ R+AA
Sbjct:    1 MFLYNLTLQRATGISYAIHGNF----SGTKQQEIV-VSRG----KILELLRPDP-------------------NTGKVHTLLTVEVFGVIRSLMAFRLTGGTKDYIVVGSDSGRIVILEY--QPSKNV-------FEKIHQETFGKSGCRRIVPGQYLAVDPKGRAVMISAIEKQKLVYILNRDAA 149          
The following BLAST results are available for this feature:
BLAST of EWM27312.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109509|gb|EWM27312.1|1.174e-149100.00splicing factor 3b subunit 3 [Nannochloropsis gadi... [more]
gi|694646730|ref|XP_009480682.1|5.226e-2032.80PREDICTED: splicing factor 3B subunit 3-like, part... [more]
gi|677461989|gb|KFQ51403.1|5.625e-2032.80Splicing factor 3B subunit 3, partial [Pelecanus c... [more]
gi|677222963|gb|KFP50688.1|1.379e-1932.80Splicing factor 3B subunit 3, partial [Cathartes a... [more]
gi|119572188|gb|EAW51803.1|2.645e-1832.26splicing factor 3b, subunit 3, 130kDa, isoform CRA... [more]
gi|14602539|gb|AAH09780.1|7.129e-1832.26SF3B3 protein [Homo sapiens] >gi|325464197|gb|ADZ1... [more]
gi|678206590|gb|KFV73568.1|8.358e-1832.80Splicing factor 3B subunit 3 [Struthio camelus aus... [more]
gi|678149296|gb|KFV18447.1|8.521e-1832.80Splicing factor 3B subunit 3 [Tauraco erythrolophu... [more]
gi|1201832264|ref|XP_021264004.1|8.678e-1832.80splicing factor 3B subunit 3 [Numida meleagris][more]
gi|706144543|ref|XP_010204529.1|8.678e-1832.80PREDICTED: splicing factor 3B subunit 3 [Colius st... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3372rna3372Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications