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Properties
| Property Name | Value |
|---|
| Product | chaperonin cpn60 tcp-1 |
| Orig transcript id | gnl|cribi|Naga_100453g5.8488.mrna |
| Orig protein id | gnl|cribi|Naga_100453g5.8488 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002461.1 | supercontig | CM002461.1:240461..242068 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna3368 ID=rna3368|Name=rna3368|organism=Nannochloropsis gaditana|type=mRNA|length=1477bp
TTGTCGTATTGAAAGATACCTACACGTACCACTCCCCTCACTCTGCAATT
TTCGGTCTCAACGCACACATTCGCACAGACAAGCCGCCCTTGGGCACACC
TGCAGGTTGATAGGGCAAAAAACCAGGCTGAGGACGGAGGAGACCATGCG
GCGGCCACGGCAAGGAGCGAGCAGGGAGGACCTTTCTGTACGGGGGGAGC
AACGCCAGTCCTCGCCCTCCTTCTTTTCTTCCTCCTCCATCTCTGTCCTT
ACCTTCCTCCTTCTAAGCACCAGTGGAACTTTGGCATTGCCAATTGGAAT
GCATCCTGGTCATGTTGCCTCCTGCAGACAAACCTACGCCTTTCATTTCG
TTAAGCCCATGACGGGTATATCTGAAGCCATGTCGGCCCCCGTATCCCCC
GCCCGCCGTGCGCGGGGACAGGTGACTGCACTGGCAAAAGTCACTCCCAA
ACTCATCTACTACCGGGACGAAACGGCTCAAAAACTAATTGCCGGGATCA
ATGCCGTGGCCGACGTGGTGAAATCCACCCTGGGCCCCAGGGGCCGCAAC
GTGGTCCTGATGCGCGACGTCGGCTACCCGGAGGTGATCAACGATGGCGT
CACCATCGCCCGCGACATCAATCTGCCCGATCCGGCCATGCACGTGGGGG
CAAAGTTGATCAAAGCCGTGGCCAGCAAGAGCGACAGCATTGCAGGCGAC
GGTACCACCACTTCGACGCTCATGACCCAAGTCTTGATCAACAAGGGTTA
CAAAATGATCATGGCAGGGGCCAACGCCATCGGCATCTGGCGAGGGATGA
AGAAAGCCAGCGAGTTCCTCTTGCTAAAGATCAAGCAGTTGGCGCGGCCC
ATAAGCAGCTCGGAAGATATCCATCACATTGCGAATATTGCTAGCGGTTC
CGCCGTTATGGGTGCCATCATCGCCAAGGGATTCGAGCGCGTGGGAACGA
ACGGGCAGGTTGTAATTGAGGAGTCGCCCACCATGTTGGACGAGATCGAC
TTCACGGAAGGGATGAATTACGAGAACGGGTTTGTGGACTCCGGCTTTGT
GACGGACACAGGGCGAAATTGCGCGGAGCTGGAGAAACCCTTCGTACTGG
TCACCAACCACGTCATCAGCAATTTGCGGGAGATGGTCACCCTCCTGGAG
ACCTTCGCCAATTCCGAACGGCAGCTGCTGATCATCGCGGAGGACATCAA
AGGGGAGGCACGGGAGGCATTGGTCATGAACAAGGAGCGCGGGTCTCTGA
AGGTGGCGGCCATGAAGGGGCCTGGCTTCGGTGCGGCATCCTCACCGGTA
CAAATCAAGTCTTCGTGTCTCCTGTCCTGTAATTAAACCCCTCCCCGCGC
TTTTTCCACGCCTTGGCGCCAACTTGCGTGGAATGGCTTTCCCTCCTCTC
CCCGCAAAACCTCTGCTCCTAGCCGTTCCCTTCCCTATGCATTTCTTGTC
AAGTCCAGATCACATATCCCTCCCTCC back to topprotein sequence of rna3368 >rna3368-protein ID=rna3368-protein|Name=rna3368|organism=Nannochloropsis gaditana|type=polypeptide|length=239bp
MEMLGQAAKAILRQETATILLTGKQSDDINARIASIRDSMTDMDSTFDKE
KAEERIASLAGGVARIRVGAATEVELKDKKLRYEDAVNSVKNALKYGVLP
GGGTTFLYLKRYRDEVVEEMKREGLDDEIFGADILFEALSEPMRQIAENA
GKHGNFVVSKCLDKEFGWGFNAASLTYENLLTAGVLDAATVTENSLANSV
SIASLVLTSGGMVVEDEEGMRQLEKEQAMDYARAAGGMM back to topmRNA from alignment at CM002461.1:240461..242068+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna3368 ID=rna3368|Name=rna3368|organism=Nannochloropsis gaditana|type=mRNA|length=1608bp|location=Sequence derived from alignment at CM002461.1:240461..242068+ (Nannochloropsis gaditana)
ctccctcccttcccccctccctccctccctcccccagtcTTCCGCCAAGA
CTACTACACCGACATTGCCATCGCCACCGGCGCCACTTTCGTGGCAAAAG
AGACCGGCCTGGGCCTCGAGAAAGTGACCATGGAGATGCTGGGTCAGGCG
GCGAAAGCCATCCTACGGTGcgggctccctcccttcctccctcccttcct
ctttccttcccttcctctcgtctTTACTCCTTCATCACGAGCCGTGTTCC
TCTGCAACCTTTTAATTTCATATCTGCATTTGTGAAAAGGCGCCTTCCGT
CTTCAAACCCTTTTTATtaatcctccctcctccacgattctttccctgcc
ctctGTGTATGGTTGTATGACACGCTTGAGCAACTCCGAGTCATGACGGC
Tgtccctcgctttctccctccttccctccctccctgcctccttccctccc
tcgccctagACAAGAAACCGCCACCATCCTCTTGACAGGCAAGCAAAGCG
ACGACATCAACGCGCGCATCGCTTCCATCCGCGACTCGATGACAGACATG
GACTCGACGTTCGACAAAGAAAAAGCCGAGGAACGGATCGCTTCCTTGGC
GGGGGGAGTGGCGCGCATTCGGGTCGGGGCTGCCACGGAGGTGGAGTTGA
AGGACAAGAAACTTCGGTAtgccctcttttttttcgcctcctccctccct
cccacccacccgctccctttccttcctgtctgACCCCCTTTCAAACTCCG
TTAGGCCGTGGTTTTGCCCCAAATCGGCTTACTCCCGTCTCTTTGCCAGC
ACTCTCTCACACAATGGTGTCTCTAATTTaaacccctccccctccatttc
ttcctccctttgcgTCCCCTGTGGTGTGTGACACAGGTATGAGGATGCGG
TCAACTCGGTCAAGAACGCACTAAAATACGGGGTCttgccggggggaggg
accacTTTCCTTTACCTCAAGCGGTATCGGGACGAAGTGGTGGAAgagat
gaagagggaagggttgGATGATGAGATATTCGGCGCGGACATTTTGTTCG
AAGCCCTCTCGGAGCCGATGCGGCAGATTGCGGAGAACGCGGGGAAACAC
GGGAACTTCGTGGTCTCCAAGTGCTTGGACAAAGAATTTGGTTGGGGGTT
CAATGCCGCGAGCCTCACCTACGAGAATCTGTTGACGGCCGGAGTACTGG
ATGCGGCAACCGTGACAGAAAACAGCCTGGCGAACTCAGTGAGCATCGCC
AGCTTGGTATTGACGAGCGGGggcatggtggtggaggacgaggaggggat
gcgGCAGTTGGAAAAGGAGCAAGCCATGGACTACGccagggcggcgggag
ggatgatgtgaagggggggaggagaagggaggaggaagaggttgggATGG
CAGTTGGACAAAAAGGGCagggacggcgggggaggtggaaatcAGAGAGA
gtcggagggggacggggcatGGCCGCGGAACAATGAGTATGTCTGACAGG
ATGCTTGTTGGATGGTAGGCGGTATGGGGAACATGTGCATtgaggggccg
ggggagggggggggcaatggCGTGGGGGCAAAAACTAAAAGAATGATATC
CGCATACA back to topCoding sequence (CDS) from alignment at CM002461.1:240461..242068+ >rna3368 ID=rna3368|Name=rna3368|organism=Nannochloropsis gaditana|type=CDS|length=2160bp|location=Sequence derived from alignment at CM002461.1:240461..242068+ (Nannochloropsis gaditana)
ATGGAGATGCTGGGTCAGGCGGCGAAAGCCATCCTACGACAAGAAACCGC
CACCATCCTCTTGACAGGCAAGCAAAGCGACGACATCAACGCGCGCATCG
CTTCCATCCGCGACTCGATGACAGACATGGACTCGACGTTCGACAAAGAA
AAAGCCGAGGAACGGATCGCTTCCTTGGCGGGGGGAGTGGCGCGCATTCG
GGTCGGGGCTGCCACGGAGGTGGAGTTGAAGGACAAGAAACTTCGGTATG
AGGATGCGGTCAACTCGGTCAAGAACGCACTAAAATACGGGGTCttgccg
gggggagggaccacTTTCCTTTACCTCAAGCGGTATCGGGACGAAGTGGT
GGAAgagatgaagagggaagggttgGATGATGAGATATTCGGCGCGGACA
TTTTGTTCGAAGCCCTCTCGGAGCCGATGCGGCAGATTGCGGAGAACGCG
GGGAAACACGGGAACTTCGTGGTCTCCAAGTGCTTGGACAAAGAATTTGG
TTGGGGGTTCAATGCCGCGAGCCTCACCTACGAGAATCTGTTGACGGCCG
GAGTACTGGATGCGGCAACCGTGACAGAAAACAGCCTGGCGAACTCAGTG
AGCATCGCCAGCTTGGTATTGACGAGCGGGggcatggtggtggaggacga
ggaggggatgcgGCAGTTGGAAAAGGAGCAAGCCATGGACTACGccaggg
cggcgggagggatgatgtgaATGGAGATGCTGGGTCAGGCGGCGAAAGCC
ATCCTACGACAAGAAACCGCCACCATCCTCTTGACAGGCAAGCAAAGCGA
CGACATCAACGCGCGCATCGCTTCCATCCGCGACTCGATGACAGACATGG
ACTCGACGTTCGACAAAGAAAAAGCCGAGGAACGGATCGCTTCCTTGGCG
GGGGGAGTGGCGCGCATTCGGGTCGGGGCTGCCACGGAGGTGGAGTTGAA
GGACAAGAAACTTCGGTATGAGGATGCGGTCAACTCGGTCAAGAACGCAC
TAAAATACGGGGTCttgccggggggagggaccacTTTCCTTTACCTCAAG
CGGTATCGGGACGAAGTGGTGGAAgagatgaagagggaagggttgGATGA
TGAGATATTCGGCGCGGACATTTTGTTCGAAGCCCTCTCGGAGCCGATGC
GGCAGATTGCGGAGAACGCGGGGAAACACGGGAACTTCGTGGTCTCCAAG
TGCTTGGACAAAGAATTTGGTTGGGGGTTCAATGCCGCGAGCCTCACCTA
CGAGAATCTGTTGACGGCCGGAGTACTGGATGCGGCAACCGTGACAGAAA
ACAGCCTGGCGAACTCAGTGAGCATCGCCAGCTTGGTATTGACGAGCGGG
ggcatggtggtggaggacgaggaggggatgcgGCAGTTGGAAAAGGAGCA
AGCCATGGACTACGccagggcggcgggagggatgatgtgaATGGAGATGC
TGGGTCAGGCGGCGAAAGCCATCCTACGACAAGAAACCGCCACCATCCTC
TTGACAGGCAAGCAAAGCGACGACATCAACGCGCGCATCGCTTCCATCCG
CGACTCGATGACAGACATGGACTCGACGTTCGACAAAGAAAAAGCCGAGG
AACGGATCGCTTCCTTGGCGGGGGGAGTGGCGCGCATTCGGGTCGGGGCT
GCCACGGAGGTGGAGTTGAAGGACAAGAAACTTCGGTATGAGGATGCGGT
CAACTCGGTCAAGAACGCACTAAAATACGGGGTCttgccggggggaggga
ccacTTTCCTTTACCTCAAGCGGTATCGGGACGAAGTGGTGGAAgagatg
aagagggaagggttgGATGATGAGATATTCGGCGCGGACATTTTGTTCGA
AGCCCTCTCGGAGCCGATGCGGCAGATTGCGGAGAACGCGGGGAAACACG
GGAACTTCGTGGTCTCCAAGTGCTTGGACAAAGAATTTGGTTGGGGGTTC
AATGCCGCGAGCCTCACCTACGAGAATCTGTTGACGGCCGGAGTACTGGA
TGCGGCAACCGTGACAGAAAACAGCCTGGCGAACTCAGTGAGCATCGCCA
GCTTGGTATTGACGAGCGGGggcatggtggtggaggacgaggaggggatg
cgGCAGTTGGAAAAGGAGCAAGCCATGGACTACGccagggcggcgggagg
gatgatgtga back to top
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