EWM27313.1, cds3359 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27313.1 vs. NCBI_GenBank
Match: gi|585109510|gb|EWM27313.1| (chaperonin cpn60 tcp-1 [Nannochloropsis gaditana]) HSP 1 Score: 482.641 bits (1241), Expect = 2.328e-172 Identity = 239/239 (100.00%), Postives = 239/239 (100.00%), Query Frame = 0
Query: 1 MEMLGQAAKAILRQETATILLTGKQSDDINARIASIRDSMTDMDSTFDKEKAEERIASLAGGVARIRVGAATEVELKDKKLRYEDAVNSVKNALKYGVLPGGGTTFLYLKRYRDEVVEEMKREGLDDEIFGADILFEALSEPMRQIAENAGKHGNFVVSKCLDKEFGWGFNAASLTYENLLTAGVLDAATVTENSLANSVSIASLVLTSGGMVVEDEEGMRQLEKEQAMDYARAAGGMM 239
MEMLGQAAKAILRQETATILLTGKQSDDINARIASIRDSMTDMDSTFDKEKAEERIASLAGGVARIRVGAATEVELKDKKLRYEDAVNSVKNALKYGVLPGGGTTFLYLKRYRDEVVEEMKREGLDDEIFGADILFEALSEPMRQIAENAGKHGNFVVSKCLDKEFGWGFNAASLTYENLLTAGVLDAATVTENSLANSVSIASLVLTSGGMVVEDEEGMRQLEKEQAMDYARAAGGMM
Sbjct: 1 MEMLGQAAKAILRQETATILLTGKQSDDINARIASIRDSMTDMDSTFDKEKAEERIASLAGGVARIRVGAATEVELKDKKLRYEDAVNSVKNALKYGVLPGGGTTFLYLKRYRDEVVEEMKREGLDDEIFGADILFEALSEPMRQIAENAGKHGNFVVSKCLDKEFGWGFNAASLTYENLLTAGVLDAATVTENSLANSVSIASLVLTSGGMVVEDEEGMRQLEKEQAMDYARAAGGMM 239
BLAST of EWM27313.1 vs. NCBI_GenBank
Match: gi|553186747|ref|XP_005854481.1| (chaperonin [Nannochloropsis gaditana CCMP526] >gi|422294578|gb|EKU21878.1| chaperonin [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 323.939 bits (829), Expect = 1.086e-110 Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 0
Query: 83 YEDAVNSVKNALKYGVLPGGGTTFLYLKRYRDEVVEEMKREGLDDEIFGADILFEALSEPMRQIAENAGKHGNFVVSKCLDKEFGWGFNAASLTYENLLTAGVLDAATVTENSLANSVSIASLVLTSGGMVVEDEEGMRQLEKEQAMDYARAAGGMM 239
YEDAVNSVKNALKYGVLPGGGTTFLYLKRYRDEVVEEMKREGLDDEIFGADILFEALSEPMRQIAENAGKHGNFVVSKCLDKEFGWGFNAASLTYENLLTAGVLDAATVTENSLANSVSIASLVLTSGGMVVEDEEGMRQLEKEQAMDYARAAGGMM
Sbjct: 3 YEDAVNSVKNALKYGVLPGGGTTFLYLKRYRDEVVEEMKREGLDDEIFGADILFEALSEPMRQIAENAGKHGNFVVSKCLDKEFGWGFNAASLTYENLLTAGVLDAATVTENSLANSVSIASLVLTSGGMVVEDEEGMRQLEKEQAMDYARAAGGMM 159
BLAST of EWM27313.1 vs. NCBI_GenBank
Match: gi|585106610|gb|EWM24977.1| (chaperonin [Nannochloropsis gaditana]) HSP 1 Score: 230.72 bits (587), Expect = 1.428e-68 Identity = 122/231 (52.81%), Postives = 165/231 (71.43%), Query Frame = 0
Query: 2 EMLGQAAKAILRQETATILLTGKQSDDINARIASIRDSMTDMDSTFDKEKAEERIASLAGGVARIRVGAATEVELKDKKLRYEDAVNSVKNALKYGVLPGGGTTFLYLKRYRDEVVEEMKREGLDDEIFGADILFEALSEPMRQIAENAGKHGNFVVSKCL-DKEFGWGFNAASLTYENLLTAGVLDAATVTENSLANSVSIASLVLTSGGMVVEDEEGMRQLEKEQAMDY 231
EMLG A K ++ ++T TI+ ++ I RI +IR M MDS FDKEKA++R+A+L GG+ARI+VGAATE ELKDKKLRYEDA+NSVK+A++ GV+PGGG+T LY+ + R+E++ M DDE GADI+F +LS P+ QIAENAG G VV + ++E+GWG+NAAS YENLL GV+D+A V N+L NS SIAS+VLT+ ++ E E R+ + A D+
Sbjct: 374 EMLGVAEKVVVGKDTTTIVTNSNYAEAIKERILAIRREMDLMDSKFDKEKAQQRVAALGGGIARIKVGAATETELKDKKLRYEDALNSVKSAIEMGVVPGGGSTLLYMLKKREEILAGMDD---DDEKAGADIVFRSLSAPVMQIAENAGIDGGIVVERIFENQEWGWGYNAASGVYENLLNTGVVDSAKVVINALENSASIASMVLTTECLITEIPE--RKSLDQAAQDF 599
BLAST of EWM27313.1 vs. NCBI_GenBank
Match: gi|676391243|ref|XP_009038899.1| (hypothetical protein AURANDRAFT_72012 [Aureococcus anophagefferens] >gi|323450439|gb|EGB06320.1| hypothetical protein AURANDRAFT_72012 [Aureococcus anophagefferens]) HSP 1 Score: 231.491 bits (589), Expect = 4.208e-66 Identity = 126/237 (53.16%), Postives = 165/237 (69.62%), Query Frame = 0
Query: 2 EMLGQAAKAILRQETATILLTGKQSDDINARIASIRDSMTDMDSTFDKEKAEERIASLAGGVARIRVGAATEVELKDKKLRYEDAVNSVKNALKYGVLPGGGTTFLYLKRYRDEVVEEMKREGLDDEIFGADILFEALSEPMRQIAENAGKHGNFVVSKCLDKEFGWGFNAASLTYENLLTAGVLDAATVTENSLANSVSIASLVLTSGGMVVEDEEGMRQLEKEQAMDYARAAGGM 238
EMLG + ++ +E TI+ GKQ+D + RIA I+ + DS FDKEKAEER+A+L GG+ARI+VGAATE ELKDKKLRYEDA+N+VK+ALK G+LPGGG+T YL R RD + M E DE GADI+F +L+ P+ QIA+NAG G V+SK K FG+G+NAA+ Y +L AGV+D+A VT ++L NS SIA LVLT+ ++ E M +++K AMD A GGM
Sbjct: 343 EMLGTCERIVVGKEETTIITDGKQADAMEKRIAQIKLEAENTDSMFDKEKAEERVAALGGGIARIKVGAATETELKDKKLRYEDALNAVKSALKMGILPGGGSTLSYLLRKRDAIAGAMDDE---DERRGADIVFNSLAAPVCQIAKNAGLEGQVVLSKVEGKPFGFGYNAATGEYCDLFEAGVVDSAQVTLSALENSASIAGLVLTTEALIHEIPVEMSEMDKLAAMDGAAGMGGM 576
BLAST of EWM27313.1 vs. NCBI_GenBank
Match: gi|88770684|gb|ABD51945.1| (chaperonin Cpn60, partial (nucleomorph) [Rhodomonas salina]) HSP 1 Score: 218.394 bits (555), Expect = 7.622e-66 Identity = 111/218 (50.92%), Postives = 152/218 (69.72%), Query Frame = 0
Query: 1 MEMLGQAAKAILRQETATILLTGKQSDDINARIASIRDSMTDMDSTFDKEKAEERIASLAGGVARIRVGAATEVELKDKKLRYEDAVNSVKNALKYGVLPGGGTTFLYLKRYRDEVVEEMKREGLDDEIFGADILFEALSEPMRQIAENAGKHGNFVVSKCLDKEFGWGFNAASLTYENLLTAGVLDAATVTENSLANSVSIASLVLTSGGMVVEDEE 218
ME LG+A++ ++ +E TI+ G ++++ RI IR + + DS FD+EK EERIA L GG+ARI+VGAATE ELKDKKLRYEDA+NS K A++ G+ PGGG T ++L R E+ + ++ E +E GA I+ +AL P+ QIA+N GK G V+ +C + EFG G+NAA+ TYENLL GV+D A VT +L NS SIAS+VLT+ +VVE E
Sbjct: 169 MEQLGKASRVVVAKEACTIIADGANQENVSKRIEQIRKQVENTDSDFDREKGEERIARLGGGIARIKVGAATETELKDKKLRYEDAINSTKAAIQLGITPGGGATLVHLIRKIPEIQDSLEDE---EEKLGAGIIGKALEAPLLQIAQNCGKEGEVVLDRCKNLEFGEGYNAATDTYENLLDCGVVDPAKVTCWALENSCSIASMVLTTEALVVEIPE 383
BLAST of EWM27313.1 vs. NCBI_GenBank
Match: gi|375332061|gb|AFA52570.1| (chaperonin [Vaucheria litorea]) HSP 1 Score: 217.238 bits (552), Expect = 1.290e-63 Identity = 115/237 (48.52%), Postives = 159/237 (67.09%), Query Frame = 0
Query: 2 EMLGQAAKAILRQETATILLTGKQSDDINARIASIRDSMTDMDSTFDKEKAEERIASLAGGVARIRVGAATEVELKDKKLRYEDAVNSVKNALKYGVLPGGGTTFLYLKRYRDEVVEEMKREGLDDEIFGADILFEALSEPMRQIAENAGKHGNFVVSKCLDKEFGWGFNAASLTYENLLTAGVLDAATVTENSLANSVSIASLVLTSGGMVVEDEEGM-RQLEKEQAMDYARAAGG 237
+MLG A+ ++ +E TI+ G Q++ + RI +IR + D+ FD+EK +ERIA+L GG+ARI+VGAATE ELKDKKLRYEDA+NSV++AL+ G++PGGG +YL+RY+D+V E DE+ GA ILF++LS P +QIA NAG G V K + EFG+G+NAA Y +L GV+D A VT N++ NS S+ASLVLT+ ++ E + Q E+EQ Y GG
Sbjct: 353 DMLGTCARLVVSKEGTTIVTDGAQAEAVAKRIEAIRKEKSSTDNQFDQEKCDERIAALGGGIARIKVGAATETELKDKKLRYEDALNSVRSALEMGIVPGGGACMVYLQRYQDKVCSLCANE---DEVLGAGILFKSLSAPCKQIAYNAGVEGGVVWEKTRNMEFGFGYNAAKDEYGDLFEMGVIDPAKVTINAIENSASVASLVLTTEALITEIPVKLTPQQEQEQ---YDEMGGG 583
BLAST of EWM27313.1 vs. NCBI_GenBank
Match: gi|298707119|emb|CBJ29911.1| (chaperonin cpn60 [Ectocarpus siliculosus]) HSP 1 Score: 217.624 bits (553), Expect = 1.970e-63 Identity = 118/237 (49.79%), Postives = 162/237 (68.35%), Query Frame = 0
Query: 1 MEMLGQAAKAILRQETATILLTGKQSDDINARIASIRDSMTDMDSTFDKEKAEERIASLAGGVARIRVGAATEVELKDKKLRYEDAVNSVKNALKYGVLPGGGTTFLYLKRYRDEVVEEMKREGLDDEIFGADILFEALSEPMRQIAENAGKHGNFVVSKCLDKEFGWGFNAASLTYENLLTAGVLDAATVTENSLANSVSIASLVLTSGGMVVEDEEGMRQLEKEQAMDYARAAGG 237
+EMLG A + ++ +E TI+ G+ + + ARI +IR DS FDKEKA+ER+A+L GG+ARI+VGAATE ELKDKKLRYEDA+NSV++AL+ G++PGGG YL+R +E + EG +D G IL +LS PM QIA+NAG G VV+KC +KE+G+G+NAA+ Y +LL AGVLD A VT N++ NS S+ASLVLT+ ++ E ++ E +Q +Y GG
Sbjct: 386 IEMLGTADRIVVMKEQTTIVSDGRNDEAVKARIKTIRKDAETSDSAFDKEKADERVAALGGGIARIKVGAATETELKDKKLRYEDALNSVRSALELGIVPGGGACLQYLQRMDEEF--RARVEG-EDRKAGVGILMRSLSAPMMQIAKNAGVEGGIVVAKCDNKEWGFGYNAANSEYCDLLEAGVLDPAKVTINAVENSASVASLVLTTECLIAEIP--VKVSEAQQQANYDAMGGG 617
BLAST of EWM27313.1 vs. NCBI_GenBank
Match: gi|922859501|gb|KOO27510.1| (chaperonin [Chrysochromulina sp. CCMP291]) HSP 1 Score: 213.386 bits (542), Expect = 2.356e-62 Identity = 105/217 (48.39%), Postives = 151/217 (69.59%), Query Frame = 0
Query: 2 EMLGQAAKAILRQETATILLTGKQSDDINARIASIRDSMTDMDSTFDKEKAEERIASLAGGVARIRVGAATEVELKDKKLRYEDAVNSVKNALKYGVLPGGGTTFLYLKRYRDEVVEEMKREGLDDEIFGADILFEALSEPMRQIAENAGKHGNFVVSKCLDKEFGWGFNAASLTYENLLTAGVLDAATVTENSLANSVSIASLVLTSGGMVVEDEE 218
EMLG A + + +E T++ TGK ++ +N RI I+ M + DS FD+EK +ERIA L G + RI+VGAATE ELKDKKLRYEDA+NSVK A+ G++PGGG+T +YL R +D+++ M E +E D+LF A+ P+ QIAENAG+ G V+ + + FG+G+NAA+ YE+LL +GV+D A VT+ + NS SIA+ V+T+G ++ E +E
Sbjct: 326 EMLGSAERIAVSKERTTMIATGKYTEQVNERIKVIKKEMENTDSEFDREKCQERIAKLGGAIGRIKVGAATETELKDKKLRYEDALNSVKAAMDEGIVPGGGSTLVYLLRTKDKILAAMNGE---EERLAVDLLFRAIQVPICQIAENAGEEGEVVLERVKGQAFGFGWNAATGKYEDLLKSGVIDPALVTQQCILNSCSIAAAVITTGALITEVKE 539
BLAST of EWM27313.1 vs. NCBI_GenBank
Match: gi|1121308313|ref|WP_073619821.1| (molecular chaperone GroEL [Calothrix sp. HK-06] >gi|1115288634|gb|OKH51730.1| chaperonin GroL [Calothrix sp. HK-06]) HSP 1 Score: 208.379 bits (529), Expect = 2.104e-60 Identity = 104/218 (47.71%), Postives = 152/218 (69.72%), Query Frame = 0
Query: 1 MEMLGQAAKAILRQETATILLTGKQSDDINARIASIRDSMTDMDSTFDKEKAEERIASLAGGVARIRVGAATEVELKDKKLRYEDAVNSVKNALKYGVLPGGGTTFLYLKRYRDEVVEEMKREGLDDEIFGADILFEALSEPMRQIAENAGKHGNFVVSKCLDKEFGWGFNAASLTYENLLTAGVLDAATVTENSLANSVSIASLVLTSGGMVVEDEE 218
+EMLG A K + +E+ TI+ G+ DD+ RI+ IR + + DS +DKEK +ERIA LAGGVA I+VGAATE ELKD+KLR EDA+N+ K A++ G++PGGGTT +YL + VE +K D+E GADI+ +L P+RQ+A+NAG G+ +V++ + EF G+NAA+ +++L+ AG++D A V ++L N+ SIA +VLT+ +VVE E
Sbjct: 312 LEMLGTARKITIDKESTTIVAAGENGDDVQKRISQIRRQLEETDSDYDKEKLQERIAKLAGGVAVIKVGAATETELKDRKLRIEDALNATKAAVEEGIVPGGGTTLIYLSKQ----VEAIKNSLRDEEKIGADIVARSLEAPLRQMADNAGVEGSVIVARVRESEFNIGYNAATNEFQDLIAAGIIDPAKVVRSALQNASSIAGMVLTTEAIVVEKPE 525
BLAST of EWM27313.1 vs. NCBI_GenBank
Match: gi|518318578|ref|WP_019488785.1| (molecular chaperone GroEL [Calothrix sp. PCC 7103]) HSP 1 Score: 208.379 bits (529), Expect = 2.189e-60 Identity = 104/218 (47.71%), Postives = 152/218 (69.72%), Query Frame = 0
Query: 1 MEMLGQAAKAILRQETATILLTGKQSDDINARIASIRDSMTDMDSTFDKEKAEERIASLAGGVARIRVGAATEVELKDKKLRYEDAVNSVKNALKYGVLPGGGTTFLYLKRYRDEVVEEMKREGLDDEIFGADILFEALSEPMRQIAENAGKHGNFVVSKCLDKEFGWGFNAASLTYENLLTAGVLDAATVTENSLANSVSIASLVLTSGGMVVEDEE 218
+EMLG A K + +E+ TI+ G+ DD+ RI+ IR + + DS +DKEK +ERIA LAGGVA I+VGAATE ELKD+KLR EDA+N+ K A++ G++PGGGTT +YL + VE +K D+E GADI+ +L P+RQ+A+NAG G+ +V++ + EF G+NAA+ +++L+ AG++D A V ++L N+ SIA +VLT+ +VVE E
Sbjct: 312 LEMLGTARKITIDKESTTIVAAGENGDDVQKRISQIRRQLEETDSDYDKEKLQERIAKLAGGVAVIKVGAATETELKDRKLRIEDALNATKAAVEEGIVPGGGTTLIYLSKQ----VEAIKNSLRDEEKIGADIVARSLEAPLRQMADNAGVEGSVIVARVRESEFNIGYNAATNEFQDLIAAGIIDPAKVVRSALQNASSIAGMVLTTEAIVVEKPE 525 The following BLAST results are available for this feature:
BLAST of EWM27313.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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