EWM27313.1, cds3359 (CDS) Nannochloropsis gaditana

Overview
NameEWM27313.1
Unique Namecds3359
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:240590..240627 +
Alignment locationCM002461.1:240920..241126 +
Alignment locationCM002461.1:241347..241821 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27313.1
Productchaperonin cpn60 tcp-1
Orig transcript idgnl|cribi|Naga_100453g5.8488.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:240590..240627 +
CM002461.1supercontigCM002461.1:240920..241126 +
CM002461.1supercontigCM002461.1:241347..241821 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0042026protein refolding
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005737cytoplasm
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
GO:0005524ATP binding
Vocabulary: INTERPRO
TermDefinition
IPR002423Cpn60/TCP-1
IPR027413GROEL-like_equatorial
IPR027409GroEL-like_apical_dom
IPR001844Chaprnin_Cpn60
Homology
BLAST of EWM27313.1 vs. NCBI_GenBank
Match: gi|585109510|gb|EWM27313.1| (chaperonin cpn60 tcp-1 [Nannochloropsis gaditana])

HSP 1 Score: 482.641 bits (1241), Expect = 2.328e-172
Identity = 239/239 (100.00%), Postives = 239/239 (100.00%), Query Frame = 0
Query:    1 MEMLGQAAKAILRQETATILLTGKQSDDINARIASIRDSMTDMDSTFDKEKAEERIASLAGGVARIRVGAATEVELKDKKLRYEDAVNSVKNALKYGVLPGGGTTFLYLKRYRDEVVEEMKREGLDDEIFGADILFEALSEPMRQIAENAGKHGNFVVSKCLDKEFGWGFNAASLTYENLLTAGVLDAATVTENSLANSVSIASLVLTSGGMVVEDEEGMRQLEKEQAMDYARAAGGMM 239
            MEMLGQAAKAILRQETATILLTGKQSDDINARIASIRDSMTDMDSTFDKEKAEERIASLAGGVARIRVGAATEVELKDKKLRYEDAVNSVKNALKYGVLPGGGTTFLYLKRYRDEVVEEMKREGLDDEIFGADILFEALSEPMRQIAENAGKHGNFVVSKCLDKEFGWGFNAASLTYENLLTAGVLDAATVTENSLANSVSIASLVLTSGGMVVEDEEGMRQLEKEQAMDYARAAGGMM
Sbjct:    1 MEMLGQAAKAILRQETATILLTGKQSDDINARIASIRDSMTDMDSTFDKEKAEERIASLAGGVARIRVGAATEVELKDKKLRYEDAVNSVKNALKYGVLPGGGTTFLYLKRYRDEVVEEMKREGLDDEIFGADILFEALSEPMRQIAENAGKHGNFVVSKCLDKEFGWGFNAASLTYENLLTAGVLDAATVTENSLANSVSIASLVLTSGGMVVEDEEGMRQLEKEQAMDYARAAGGMM 239          
BLAST of EWM27313.1 vs. NCBI_GenBank
Match: gi|553186747|ref|XP_005854481.1| (chaperonin [Nannochloropsis gaditana CCMP526] >gi|422294578|gb|EKU21878.1| chaperonin [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 323.939 bits (829), Expect = 1.086e-110
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 0
Query:   83 YEDAVNSVKNALKYGVLPGGGTTFLYLKRYRDEVVEEMKREGLDDEIFGADILFEALSEPMRQIAENAGKHGNFVVSKCLDKEFGWGFNAASLTYENLLTAGVLDAATVTENSLANSVSIASLVLTSGGMVVEDEEGMRQLEKEQAMDYARAAGGMM 239
            YEDAVNSVKNALKYGVLPGGGTTFLYLKRYRDEVVEEMKREGLDDEIFGADILFEALSEPMRQIAENAGKHGNFVVSKCLDKEFGWGFNAASLTYENLLTAGVLDAATVTENSLANSVSIASLVLTSGGMVVEDEEGMRQLEKEQAMDYARAAGGMM
Sbjct:    3 YEDAVNSVKNALKYGVLPGGGTTFLYLKRYRDEVVEEMKREGLDDEIFGADILFEALSEPMRQIAENAGKHGNFVVSKCLDKEFGWGFNAASLTYENLLTAGVLDAATVTENSLANSVSIASLVLTSGGMVVEDEEGMRQLEKEQAMDYARAAGGMM 159          
BLAST of EWM27313.1 vs. NCBI_GenBank
Match: gi|585106610|gb|EWM24977.1| (chaperonin [Nannochloropsis gaditana])

HSP 1 Score: 230.72 bits (587), Expect = 1.428e-68
Identity = 122/231 (52.81%), Postives = 165/231 (71.43%), Query Frame = 0
Query:    2 EMLGQAAKAILRQETATILLTGKQSDDINARIASIRDSMTDMDSTFDKEKAEERIASLAGGVARIRVGAATEVELKDKKLRYEDAVNSVKNALKYGVLPGGGTTFLYLKRYRDEVVEEMKREGLDDEIFGADILFEALSEPMRQIAENAGKHGNFVVSKCL-DKEFGWGFNAASLTYENLLTAGVLDAATVTENSLANSVSIASLVLTSGGMVVEDEEGMRQLEKEQAMDY 231
            EMLG A K ++ ++T TI+     ++ I  RI +IR  M  MDS FDKEKA++R+A+L GG+ARI+VGAATE ELKDKKLRYEDA+NSVK+A++ GV+PGGG+T LY+ + R+E++  M     DDE  GADI+F +LS P+ QIAENAG  G  VV +   ++E+GWG+NAAS  YENLL  GV+D+A V  N+L NS SIAS+VLT+  ++ E  E  R+   + A D+
Sbjct:  374 EMLGVAEKVVVGKDTTTIVTNSNYAEAIKERILAIRREMDLMDSKFDKEKAQQRVAALGGGIARIKVGAATETELKDKKLRYEDALNSVKSAIEMGVVPGGGSTLLYMLKKREEILAGMDD---DDEKAGADIVFRSLSAPVMQIAENAGIDGGIVVERIFENQEWGWGYNAASGVYENLLNTGVVDSAKVVINALENSASIASMVLTTECLITEIPE--RKSLDQAAQDF 599          
BLAST of EWM27313.1 vs. NCBI_GenBank
Match: gi|676391243|ref|XP_009038899.1| (hypothetical protein AURANDRAFT_72012 [Aureococcus anophagefferens] >gi|323450439|gb|EGB06320.1| hypothetical protein AURANDRAFT_72012 [Aureococcus anophagefferens])

HSP 1 Score: 231.491 bits (589), Expect = 4.208e-66
Identity = 126/237 (53.16%), Postives = 165/237 (69.62%), Query Frame = 0
Query:    2 EMLGQAAKAILRQETATILLTGKQSDDINARIASIRDSMTDMDSTFDKEKAEERIASLAGGVARIRVGAATEVELKDKKLRYEDAVNSVKNALKYGVLPGGGTTFLYLKRYRDEVVEEMKREGLDDEIFGADILFEALSEPMRQIAENAGKHGNFVVSKCLDKEFGWGFNAASLTYENLLTAGVLDAATVTENSLANSVSIASLVLTSGGMVVEDEEGMRQLEKEQAMDYARAAGGM 238
            EMLG   + ++ +E  TI+  GKQ+D +  RIA I+    + DS FDKEKAEER+A+L GG+ARI+VGAATE ELKDKKLRYEDA+N+VK+ALK G+LPGGG+T  YL R RD +   M  E   DE  GADI+F +L+ P+ QIA+NAG  G  V+SK   K FG+G+NAA+  Y +L  AGV+D+A VT ++L NS SIA LVLT+  ++ E    M +++K  AMD A   GGM
Sbjct:  343 EMLGTCERIVVGKEETTIITDGKQADAMEKRIAQIKLEAENTDSMFDKEKAEERVAALGGGIARIKVGAATETELKDKKLRYEDALNAVKSALKMGILPGGGSTLSYLLRKRDAIAGAMDDE---DERRGADIVFNSLAAPVCQIAKNAGLEGQVVLSKVEGKPFGFGYNAATGEYCDLFEAGVVDSAQVTLSALENSASIAGLVLTTEALIHEIPVEMSEMDKLAAMDGAAGMGGM 576          
BLAST of EWM27313.1 vs. NCBI_GenBank
Match: gi|88770684|gb|ABD51945.1| (chaperonin Cpn60, partial (nucleomorph) [Rhodomonas salina])

HSP 1 Score: 218.394 bits (555), Expect = 7.622e-66
Identity = 111/218 (50.92%), Postives = 152/218 (69.72%), Query Frame = 0
Query:    1 MEMLGQAAKAILRQETATILLTGKQSDDINARIASIRDSMTDMDSTFDKEKAEERIASLAGGVARIRVGAATEVELKDKKLRYEDAVNSVKNALKYGVLPGGGTTFLYLKRYRDEVVEEMKREGLDDEIFGADILFEALSEPMRQIAENAGKHGNFVVSKCLDKEFGWGFNAASLTYENLLTAGVLDAATVTENSLANSVSIASLVLTSGGMVVEDEE 218
            ME LG+A++ ++ +E  TI+  G   ++++ RI  IR  + + DS FD+EK EERIA L GG+ARI+VGAATE ELKDKKLRYEDA+NS K A++ G+ PGGG T ++L R   E+ + ++ E   +E  GA I+ +AL  P+ QIA+N GK G  V+ +C + EFG G+NAA+ TYENLL  GV+D A VT  +L NS SIAS+VLT+  +VVE  E
Sbjct:  169 MEQLGKASRVVVAKEACTIIADGANQENVSKRIEQIRKQVENTDSDFDREKGEERIARLGGGIARIKVGAATETELKDKKLRYEDAINSTKAAIQLGITPGGGATLVHLIRKIPEIQDSLEDE---EEKLGAGIIGKALEAPLLQIAQNCGKEGEVVLDRCKNLEFGEGYNAATDTYENLLDCGVVDPAKVTCWALENSCSIASMVLTTEALVVEIPE 383          
BLAST of EWM27313.1 vs. NCBI_GenBank
Match: gi|375332061|gb|AFA52570.1| (chaperonin [Vaucheria litorea])

HSP 1 Score: 217.238 bits (552), Expect = 1.290e-63
Identity = 115/237 (48.52%), Postives = 159/237 (67.09%), Query Frame = 0
Query:    2 EMLGQAAKAILRQETATILLTGKQSDDINARIASIRDSMTDMDSTFDKEKAEERIASLAGGVARIRVGAATEVELKDKKLRYEDAVNSVKNALKYGVLPGGGTTFLYLKRYRDEVVEEMKREGLDDEIFGADILFEALSEPMRQIAENAGKHGNFVVSKCLDKEFGWGFNAASLTYENLLTAGVLDAATVTENSLANSVSIASLVLTSGGMVVEDEEGM-RQLEKEQAMDYARAAGG 237
            +MLG  A+ ++ +E  TI+  G Q++ +  RI +IR   +  D+ FD+EK +ERIA+L GG+ARI+VGAATE ELKDKKLRYEDA+NSV++AL+ G++PGGG   +YL+RY+D+V      E   DE+ GA ILF++LS P +QIA NAG  G  V  K  + EFG+G+NAA   Y +L   GV+D A VT N++ NS S+ASLVLT+  ++ E    +  Q E+EQ   Y    GG
Sbjct:  353 DMLGTCARLVVSKEGTTIVTDGAQAEAVAKRIEAIRKEKSSTDNQFDQEKCDERIAALGGGIARIKVGAATETELKDKKLRYEDALNSVRSALEMGIVPGGGACMVYLQRYQDKVCSLCANE---DEVLGAGILFKSLSAPCKQIAYNAGVEGGVVWEKTRNMEFGFGYNAAKDEYGDLFEMGVIDPAKVTINAIENSASVASLVLTTEALITEIPVKLTPQQEQEQ---YDEMGGG 583          
BLAST of EWM27313.1 vs. NCBI_GenBank
Match: gi|298707119|emb|CBJ29911.1| (chaperonin cpn60 [Ectocarpus siliculosus])

HSP 1 Score: 217.624 bits (553), Expect = 1.970e-63
Identity = 118/237 (49.79%), Postives = 162/237 (68.35%), Query Frame = 0
Query:    1 MEMLGQAAKAILRQETATILLTGKQSDDINARIASIRDSMTDMDSTFDKEKAEERIASLAGGVARIRVGAATEVELKDKKLRYEDAVNSVKNALKYGVLPGGGTTFLYLKRYRDEVVEEMKREGLDDEIFGADILFEALSEPMRQIAENAGKHGNFVVSKCLDKEFGWGFNAASLTYENLLTAGVLDAATVTENSLANSVSIASLVLTSGGMVVEDEEGMRQLEKEQAMDYARAAGG 237
            +EMLG A + ++ +E  TI+  G+  + + ARI +IR      DS FDKEKA+ER+A+L GG+ARI+VGAATE ELKDKKLRYEDA+NSV++AL+ G++PGGG    YL+R  +E     + EG +D   G  IL  +LS PM QIA+NAG  G  VV+KC +KE+G+G+NAA+  Y +LL AGVLD A VT N++ NS S+ASLVLT+  ++ E    ++  E +Q  +Y    GG
Sbjct:  386 IEMLGTADRIVVMKEQTTIVSDGRNDEAVKARIKTIRKDAETSDSAFDKEKADERVAALGGGIARIKVGAATETELKDKKLRYEDALNSVRSALELGIVPGGGACLQYLQRMDEEF--RARVEG-EDRKAGVGILMRSLSAPMMQIAKNAGVEGGIVVAKCDNKEWGFGYNAANSEYCDLLEAGVLDPAKVTINAVENSASVASLVLTTECLIAEIP--VKVSEAQQQANYDAMGGG 617          
BLAST of EWM27313.1 vs. NCBI_GenBank
Match: gi|922859501|gb|KOO27510.1| (chaperonin [Chrysochromulina sp. CCMP291])

HSP 1 Score: 213.386 bits (542), Expect = 2.356e-62
Identity = 105/217 (48.39%), Postives = 151/217 (69.59%), Query Frame = 0
Query:    2 EMLGQAAKAILRQETATILLTGKQSDDINARIASIRDSMTDMDSTFDKEKAEERIASLAGGVARIRVGAATEVELKDKKLRYEDAVNSVKNALKYGVLPGGGTTFLYLKRYRDEVVEEMKREGLDDEIFGADILFEALSEPMRQIAENAGKHGNFVVSKCLDKEFGWGFNAASLTYENLLTAGVLDAATVTENSLANSVSIASLVLTSGGMVVEDEE 218
            EMLG A +  + +E  T++ TGK ++ +N RI  I+  M + DS FD+EK +ERIA L G + RI+VGAATE ELKDKKLRYEDA+NSVK A+  G++PGGG+T +YL R +D+++  M  E   +E    D+LF A+  P+ QIAENAG+ G  V+ +   + FG+G+NAA+  YE+LL +GV+D A VT+  + NS SIA+ V+T+G ++ E +E
Sbjct:  326 EMLGSAERIAVSKERTTMIATGKYTEQVNERIKVIKKEMENTDSEFDREKCQERIAKLGGAIGRIKVGAATETELKDKKLRYEDALNSVKAAMDEGIVPGGGSTLVYLLRTKDKILAAMNGE---EERLAVDLLFRAIQVPICQIAENAGEEGEVVLERVKGQAFGFGWNAATGKYEDLLKSGVIDPALVTQQCILNSCSIAAAVITTGALITEVKE 539          
BLAST of EWM27313.1 vs. NCBI_GenBank
Match: gi|1121308313|ref|WP_073619821.1| (molecular chaperone GroEL [Calothrix sp. HK-06] >gi|1115288634|gb|OKH51730.1| chaperonin GroL [Calothrix sp. HK-06])

HSP 1 Score: 208.379 bits (529), Expect = 2.104e-60
Identity = 104/218 (47.71%), Postives = 152/218 (69.72%), Query Frame = 0
Query:    1 MEMLGQAAKAILRQETATILLTGKQSDDINARIASIRDSMTDMDSTFDKEKAEERIASLAGGVARIRVGAATEVELKDKKLRYEDAVNSVKNALKYGVLPGGGTTFLYLKRYRDEVVEEMKREGLDDEIFGADILFEALSEPMRQIAENAGKHGNFVVSKCLDKEFGWGFNAASLTYENLLTAGVLDAATVTENSLANSVSIASLVLTSGGMVVEDEE 218
            +EMLG A K  + +E+ TI+  G+  DD+  RI+ IR  + + DS +DKEK +ERIA LAGGVA I+VGAATE ELKD+KLR EDA+N+ K A++ G++PGGGTT +YL +     VE +K    D+E  GADI+  +L  P+RQ+A+NAG  G+ +V++  + EF  G+NAA+  +++L+ AG++D A V  ++L N+ SIA +VLT+  +VVE  E
Sbjct:  312 LEMLGTARKITIDKESTTIVAAGENGDDVQKRISQIRRQLEETDSDYDKEKLQERIAKLAGGVAVIKVGAATETELKDRKLRIEDALNATKAAVEEGIVPGGGTTLIYLSKQ----VEAIKNSLRDEEKIGADIVARSLEAPLRQMADNAGVEGSVIVARVRESEFNIGYNAATNEFQDLIAAGIIDPAKVVRSALQNASSIAGMVLTTEAIVVEKPE 525          
BLAST of EWM27313.1 vs. NCBI_GenBank
Match: gi|518318578|ref|WP_019488785.1| (molecular chaperone GroEL [Calothrix sp. PCC 7103])

HSP 1 Score: 208.379 bits (529), Expect = 2.189e-60
Identity = 104/218 (47.71%), Postives = 152/218 (69.72%), Query Frame = 0
Query:    1 MEMLGQAAKAILRQETATILLTGKQSDDINARIASIRDSMTDMDSTFDKEKAEERIASLAGGVARIRVGAATEVELKDKKLRYEDAVNSVKNALKYGVLPGGGTTFLYLKRYRDEVVEEMKREGLDDEIFGADILFEALSEPMRQIAENAGKHGNFVVSKCLDKEFGWGFNAASLTYENLLTAGVLDAATVTENSLANSVSIASLVLTSGGMVVEDEE 218
            +EMLG A K  + +E+ TI+  G+  DD+  RI+ IR  + + DS +DKEK +ERIA LAGGVA I+VGAATE ELKD+KLR EDA+N+ K A++ G++PGGGTT +YL +     VE +K    D+E  GADI+  +L  P+RQ+A+NAG  G+ +V++  + EF  G+NAA+  +++L+ AG++D A V  ++L N+ SIA +VLT+  +VVE  E
Sbjct:  312 LEMLGTARKITIDKESTTIVAAGENGDDVQKRISQIRRQLEETDSDYDKEKLQERIAKLAGGVAVIKVGAATETELKDRKLRIEDALNATKAAVEEGIVPGGGTTLIYLSKQ----VEAIKNSLRDEEKIGADIVARSLEAPLRQMADNAGVEGSVIVARVRESEFNIGYNAATNEFQDLIAAGIIDPAKVVRSALQNASSIAGMVLTTEAIVVEKPE 525          
The following BLAST results are available for this feature:
BLAST of EWM27313.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109510|gb|EWM27313.1|2.328e-172100.00chaperonin cpn60 tcp-1 [Nannochloropsis gaditana][more]
gi|553186747|ref|XP_005854481.1|1.086e-110100.00chaperonin [Nannochloropsis gaditana CCMP526] >gi|... [more]
gi|585106610|gb|EWM24977.1|1.428e-6852.81chaperonin [Nannochloropsis gaditana][more]
gi|676391243|ref|XP_009038899.1|4.208e-6653.16hypothetical protein AURANDRAFT_72012 [Aureococcus... [more]
gi|88770684|gb|ABD51945.1|7.622e-6650.92chaperonin Cpn60, partial (nucleomorph) [Rhodomona... [more]
gi|375332061|gb|AFA52570.1|1.290e-6348.52chaperonin [Vaucheria litorea][more]
gi|298707119|emb|CBJ29911.1|1.970e-6349.79chaperonin cpn60 [Ectocarpus siliculosus][more]
gi|922859501|gb|KOO27510.1|2.356e-6248.39chaperonin [Chrysochromulina sp. CCMP291][more]
gi|1121308313|ref|WP_073619821.1|2.104e-6047.71molecular chaperone GroEL [Calothrix sp. HK-06] >g... [more]
gi|518318578|ref|WP_019488785.1|2.189e-6047.71molecular chaperone GroEL [Calothrix sp. PCC 7103][more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3368rna3368Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications