rna3365, rna3365 (mRNA) Nannochloropsis gaditana

Overview
Namerna3365
Unique Namerna3365
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1364
Alignment locationCM002461.1:227779..229321 +

Link to JBrowse

Properties
Property NameValue
Productconserved unknown protein
Orig transcript idgnl|cribi|Naga_100563g2.2978.mrna
Orig protein idgnl|cribi|Naga_100563g2.2978
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:227779..229321 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100563g2gene3240Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3365rna3365-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27317.1cds3356Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3365 ID=rna3365|Name=rna3365|organism=Nannochloropsis gaditana|type=mRNA|length=1364bp
CGACTTTTCCTTCTGACCATGACTAGGATGCCCCCCCCGTTCACTTGCTT
TCCTGTGCATGCACTTATGTACAGGCGTTTCTGCGCCATTCGTACAACGC
GGTCATGAGTCGGCGGACGACTTTATCAAGTCTCGAGGCTGAGAGAGCAC
ACTCCTTCTACGAGTTAAACGTGCCTGGGAGCTTGCCGCCAGACTTGACT
CCCCAAACGGAAGAAGCACAGAGAAGCCAATCAAACATCTCGCAGGCCCC
CGACAACAACGATGGCCATGAGAAAAACGGAGATGCCGGGGTGGAGAAGG
AGGAAGGAGAGGGTGAAGCAGCCGAGCAGTCCCCCCTCGTCCTCGAACCT
CTACCCATCCCCTCCCCTCCTCCAGCCTCCATGCCTCAGATATCGAGCGC
CGCGTTTCCCTCCGAGCACCACCATCACCATGTGTCGTTGCACGCACCGC
CGCCTGTCCATCCCATGCAAGCTCCGCCCGCCCACCATCCTTACCACCCT
CACCACCTCCCTCCCGGAATGGGGCCCTGCGCCCCGATGTCTGCAACCCA
GCTTCCCCCTGGCCCTTACAATGGCGGCTCCATGTACGCACCCGCTCTTT
CTACGATGAATCCTCACTACCCCCACGCGGCTGGCTCTGGACCAGGCACC
ATGCCCCCTGGTCCCCGACCGTCGCCCTCTCAAGCCTGGAATGCCCCCCC
GGCCCTTCCAACTGCTGCGGACACCGAGGCCCTTCCCATTAAGACGGGGA
AATTCAGCAAAAGCGAATCGCAGGCGATTTTGCACGCGGTCCAAGAGTAT
TGCGAGGCCCACGACGTGAGCGTGCACCGCCTGTGCTCGGAGAATGCTCA
CCGGGGCGACTTGAAAGGCGCCTGGTTGAAAATCGCCAAGGTGCTCCCGA
ACCGGACCGTCCAAGCCGTCTACCGGCACGGCTTAAGGAAACTGCACTCC
TTCAAGCGGGGGAAATGGACGGAGGAGGAGGAACGGAAGCTGATGGAGCT
GGTGGAGGTGCGCGGCCAGAAGTGGGTCAAGTTCCAGGAGGTGTTGAACC
GCTCCGCTGACGCCTGTAGAGACAAGCACAGGGAGCTGGCGACGGGGTGG
GCGGCCAAGGCATGGGCAAGGAAGGGGGCGGAAGGGTACCCGGAGGAGGC
GCGGGGGCCGCCGACGGCGGTGGAAGGGGAGGAGGCGGGGAAGGAGGAAG
GGCGGGGGGGGGGCGGGGAGAAGGGCGGGCGGAGTGCGGAGGGAGACTTG
GGAAGGAGGGTGCCGTTGCTCTCTTCCTCCTCCTCCTCCGTGCCCTCCTC
TTCCTCCTCGTCGGCGGAGGAAGGGGCGGAGGAAGGGGGGAAGAAGGGGG
AAAGGAGGGGGTGA
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protein sequence of rna3365

>rna3365-protein ID=rna3365-protein|Name=rna3365|organism=Nannochloropsis gaditana|type=polypeptide|length=446bp
KSGAAEDGTPLPPRRTSGRWSKEEEDQFIHAVCDYLHRPRSTPLAELPRE
GINWTEVASRLHSTRSRIHCLNKWAQLQGKHRRVEERRRLASVVGDVGLP
SGYLNGSLPPPPPPPPPPPPLPLPPPIAPLISTAPPPSYSSEAPPSLPPS
LPPFLPPPFPLPAPMANSSTFKMENLQQDLQLLDRLIELAPAEESEVVWS
RLPVRNALQRWGKLKQMLERGGKGREGGDVLVGGDAASLQKAMQVMKEEV
LEEIRKTELRVQKRAMRARRSKERERRMAETKVRTRLMKEERRLKRMEEA
VVRERRRKEKEERRKRKRRESGLEAVSILASLATKGSVKEKEEEEEEELE
EEEIVITSDSEDGERRRKRRRGGGVGKGRGRRKEGRKRRKRRRIKKWAGA
CLQFEELVLRKSLCHDRQNEEERLPSQGLAQSVTKDLKHDKGWVRR
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mRNA from alignment at CM002461.1:227779..229321+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3365 ID=rna3365|Name=rna3365|organism=Nannochloropsis gaditana|type=mRNA|length=1543bp|location=Sequence derived from alignment at CM002461.1:227779..229321+ (Nannochloropsis gaditana)
AAGTCGGGAGCagcggaggacgggacgcctctcccccctcgccggACCTC
GGGAAggtggagcaaggaggaggaggatcagTTCATCCACGCGGTGTGTG
ACTACCTGCATCGACCCCGCTCCACCCCCCTGGCCGAGCTGCCCCGGGAG
GGGATCAATTGGACTGAGGTGGCCTCCCGCCTGCACTCCACCCGCTCACG
GATCCATTGCCTGAACAAATGGGCCCAGCTCCAAGGGAAGCACCGGCGCG
TGGAGGAACGTCGGCGGCTGGCGTCGGTCGTCGGCGACGTTGGCCTCCCG
TCGGGCTACCTGAAcggttctctccctcccccgccgcctcctccaccacc
tcctcctcctcttccacttcctccacccatcGCCCCCCTGATCTCcactg
ccccccctccttcgtacTCAtccgaggcccctccctcccttcctccctcc
ctcccccccttcctccccccgcccttccccctgcccgccccgaTGGCTAA
TTCTTCCACTTTCAAGATGGAGAATTTGCAACAAGACCTGCAGTTGTTGG
ACCGATTGATCGAACTGGCAccggcggaggaaagtgaGGTGGTTTGGTCC
CGTTTGCCGGTTCGAAACGCCCTGCAACGGTGGGGGAAATTGAAGCAGAT
Gctggagcggggagggaaggggagagaaggaggggacgttttggtggggg
gggacgcggcGTCGCTGCAGAAAGCGATGCAGgtgatgaaggaggaagtt
tTGGAGGAGATACGAAAGACGGAGCTTCGCGTGCAAAAGAGGGCGATGCG
GGCCCGGCGTTCCAAGGAGCGGGAACGGAGGATGGCAGAGACCAAAGTCC
GGACCCGGTTgatgaaggaagagaggaggttgaagaggatggaggaggcg
gtggtgcggGAGCGGCgacggaaagagaaggaggagaggaggaagaggaa
gaggagggaaagcgggttGGAGGCAGTGTCGATTCTGGCCTCCCTCGCGA
CGAAAGGGTcggtgaaggagaaggaggaggaggaggaggaggagttggag
gaagaggaaattgtAATCACCTCGGACAGtgaggacggggaaaggagaag
aaagaggagaagaggggggggcgtcgggaagggaagggggaggaggaagg
aggggaggaagaggaggaagaggaggaggattaaaaagtgggcgggggcg
tgtTTGCAATTCGAAGAGCTTGTACTGAGAAAATCATTGTGCCACGACCG
GCaaaatgaagaggaaagactGCCATCACAAGGACTCGCACAGTCTGTCA
CAAAGGATTTGAAACATGATAAAGGGTGGGTGAGGAGGTGAGGCCGTACA
CGGCCAGCAGCCGGTGTCTGGTTGCTGATTCATCAACGTGCTTTTGATGC
GATACGTTCAGCATGGAACTGGTATGTCCCACCGTTACAAGTGAAAGACT
CGGGGGATAGGGTACGGCCGCTTAGTACCTctgaaaaggagggatgtAAA
CCCGAtaaatggcgcgaaaagtaAGTGACTCGATGAAGCTTCC
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Coding sequence (CDS) from alignment at CM002461.1:227779..229321+

>rna3365 ID=rna3365|Name=rna3365|organism=Nannochloropsis gaditana|type=CDS|length=1341bp|location=Sequence derived from alignment at CM002461.1:227779..229321+ (Nannochloropsis gaditana)
AAGTCGGGAGCagcggaggacgggacgcctctcccccctcgccggACCTC
GGGAAggtggagcaaggaggaggaggatcagTTCATCCACGCGGTGTGTG
ACTACCTGCATCGACCCCGCTCCACCCCCCTGGCCGAGCTGCCCCGGGAG
GGGATCAATTGGACTGAGGTGGCCTCCCGCCTGCACTCCACCCGCTCACG
GATCCATTGCCTGAACAAATGGGCCCAGCTCCAAGGGAAGCACCGGCGCG
TGGAGGAACGTCGGCGGCTGGCGTCGGTCGTCGGCGACGTTGGCCTCCCG
TCGGGCTACCTGAAcggttctctccctcccccgccgcctcctccaccacc
tcctcctcctcttccacttcctccacccatcGCCCCCCTGATCTCcactg
ccccccctccttcgtacTCAtccgaggcccctccctcccttcctccctcc
ctcccccccttcctccccccgcccttccccctgcccgccccgaTGGCTAA
TTCTTCCACTTTCAAGATGGAGAATTTGCAACAAGACCTGCAGTTGTTGG
ACCGATTGATCGAACTGGCAccggcggaggaaagtgaGGTGGTTTGGTCC
CGTTTGCCGGTTCGAAACGCCCTGCAACGGTGGGGGAAATTGAAGCAGAT
Gctggagcggggagggaaggggagagaaggaggggacgttttggtggggg
gggacgcggcGTCGCTGCAGAAAGCGATGCAGgtgatgaaggaggaagtt
tTGGAGGAGATACGAAAGACGGAGCTTCGCGTGCAAAAGAGGGCGATGCG
GGCCCGGCGTTCCAAGGAGCGGGAACGGAGGATGGCAGAGACCAAAGTCC
GGACCCGGTTgatgaaggaagagaggaggttgaagaggatggaggaggcg
gtggtgcggGAGCGGCgacggaaagagaaggaggagaggaggaagaggaa
gaggagggaaagcgggttGGAGGCAGTGTCGATTCTGGCCTCCCTCGCGA
CGAAAGGGTcggtgaaggagaaggaggaggaggaggaggaggagttggag
gaagaggaaattgtAATCACCTCGGACAGtgaggacggggaaaggagaag
aaagaggagaagaggggggggcgtcgggaagggaagggggaggaggaagg
aggggaggaagaggaggaagaggaggaggattaaaaagtgggcgggggcg
tgtTTGCAATTCGAAGAGCTTGTACTGAGAAAATCATTGTGCCACGACCG
GCaaaatgaagaggaaagactGCCATCACAAGGACTCGCACAGTCTGTCA
CAAAGGATTTGAAACATGATAAAGGGTGGGTGAGGAGGTGA
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Synonyms
Publications