EWM27317.1, cds3356 (CDS) Nannochloropsis gaditana

Overview
NameEWM27317.1
Unique Namecds3356
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:227779..229119 +

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Properties
Property NameValue
Start range227779
Start range.
Protein idEWM27317.1
Productconserved unknown protein
Partialtrue
Orig transcript idgnl|cribi|Naga_100563g2.2978.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:227779..229119 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR017877Myb-like_dom
IPR009057Homeodomain-like
IPR001005SANT/Myb
Homology
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BLAST of EWM27317.1 vs. NCBI_GenBank
Match: gi|585109516|gb|EWM27317.1| (conserved unknown protein, partial [Nannochloropsis gaditana])

HSP 1 Score: 874.774 bits (2259), Expect = 0.000e+0
Identity = 446/446 (100.00%), Postives = 446/446 (100.00%), Query Frame = 0 
Query:    1 KSGAAEDGTPLPPRRTSGRWSKEEEDQFIHAVCDYLHRPRSTPLAELPREGINWTEVASRLHSTRSRIHCLNKWAQLQGKHRRVEERRRLASVVGDVGLPSGYLNGSLPPPPPPPPPPPPLPLPPPIAPLISTAPPPSYSSEAPPSLPPSLPPFLPPPFPLPAPMANSSTFKMENLQQDLQLLDRLIELAPAEESEVVWSRLPVRNALQRWGKLKQMLERGGKGREGGDVLVGGDAASLQKAMQVMKEEVLEEIRKTELRVQKRAMRARRSKERERRMAETKVRTRLMKEERRLKRMEEAVVRERRRKEKEERRKRKRRESGLEAVSILASLATKGSVKEKEEEEEEELEEEEIVITSDSEDGERRRKRRRGGGVGKGRGRRKEGRKRRKRRRIKKWAGACLQFEELVLRKSLCHDRQNEEERLPSQGLAQSVTKDLKHDKGWVRR 446
            KSGAAEDGTPLPPRRTSGRWSKEEEDQFIHAVCDYLHRPRSTPLAELPREGINWTEVASRLHSTRSRIHCLNKWAQLQGKHRRVEERRRLASVVGDVGLPSGYLNGSLPPPPPPPPPPPPLPLPPPIAPLISTAPPPSYSSEAPPSLPPSLPPFLPPPFPLPAPMANSSTFKMENLQQDLQLLDRLIELAPAEESEVVWSRLPVRNALQRWGKLKQMLERGGKGREGGDVLVGGDAASLQKAMQVMKEEVLEEIRKTELRVQKRAMRARRSKERERRMAETKVRTRLMKEERRLKRMEEAVVRERRRKEKEERRKRKRRESGLEAVSILASLATKGSVKEKEEEEEEELEEEEIVITSDSEDGERRRKRRRGGGVGKGRGRRKEGRKRRKRRRIKKWAGACLQFEELVLRKSLCHDRQNEEERLPSQGLAQSVTKDLKHDKGWVRR
Sbjct:    1 KSGAAEDGTPLPPRRTSGRWSKEEEDQFIHAVCDYLHRPRSTPLAELPREGINWTEVASRLHSTRSRIHCLNKWAQLQGKHRRVEERRRLASVVGDVGLPSGYLNGSLPPPPPPPPPPPPLPLPPPIAPLISTAPPPSYSSEAPPSLPPSLPPFLPPPFPLPAPMANSSTFKMENLQQDLQLLDRLIELAPAEESEVVWSRLPVRNALQRWGKLKQMLERGGKGREGGDVLVGGDAASLQKAMQVMKEEVLEEIRKTELRVQKRAMRARRSKERERRMAETKVRTRLMKEERRLKRMEEAVVRERRRKEKEERRKRKRRESGLEAVSILASLATKGSVKEKEEEEEEELEEEEIVITSDSEDGERRRKRRRGGGVGKGRGRRKEGRKRRKRRRIKKWAGACLQFEELVLRKSLCHDRQNEEERLPSQGLAQSVTKDLKHDKGWVRR 446
The following BLAST results are available for this feature:
BLAST of EWM27317.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585109516|gb|EWM27317.1|0.000e+0100.00conserved unknown protein, partial [Nannochloropsi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3365rna3365Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications