|
|
Properties
| Property Name | Value |
|---|
| Product | myb-like dna-binding domain-containing protein |
| Orig transcript id | gnl|cribi|Naga_100192g1.10346.mrna |
| Orig protein id | gnl|cribi|Naga_100192g1.10346 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002461.1 | supercontig | CM002461.1:226127..227490 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna3364 ID=rna3364|Name=rna3364|organism=Nannochloropsis gaditana|type=mRNA|length=4993bp
TTTGAACCGTTTACACCCCTCATGTTGAAGATGGCTGGGAGGGCGCAAGG
ACGGGCGTCCCACGTGCATTACAGAGGTGAAAGGAAAGCAACTGTGACCC
AGATATGTCTAGAAGGGATGCAATGGATTCTTGAGTAGAGATGGAAAGAA
TTGGTGTGTTTTTGGGCCCTTTGGGCGCCACCTCTTTCTCCATTCTTTTT
GTGCCAGACTACCGAAATAAGACCTTTTACGCATGTACCAAAAACGCAAA
AATCATCACAGAGCCTTCCTAACTATTATGACTTGGTATGATGCATATCA
ATCACTCTGTCGTTGTCACTTCGTGGCATCTTTATTGCGCTCTAGAGAGA
AGGCAGATGGCCCCCCTCACACGGACCGAAAGAGGTCGAGCTGCAGAATA
CGAAAGCAGCAAAAGCTTGCATTGACATTTCACACTCTACCAGACAGGAA
AGCCATGCATTGTCTGAGTACTGTCATATTCTATATCGTGATTTCCAGCT
AAATAGTTGTTGTGGGCAAAATAGTCTTTCCAAGCAATAGACACGAGACT
GCTGCCTTCCTGATTCTGCCTCTATCAGATGTTGCAATGCTCCTGCTCTG
ACATCACGTCTCTAGCATGCCTTTCCACCGCTCTGTGAAGCTACCTATGC
AGATGAAATGTATCTGCGTGCAATGCTTCACTTTGTCGTGTTTGCGGGCT
TAAGCCTATCGACAAATGCAACAGAAAACTCGGGGAGGGCAGGGTAGCTC
GTCACGTTTCAACAACGCACGTGGTCAAAATATAGCTCACAGCCGTTGTC
ACCGACACATTCCATCCTCGCATATCCTCTCATTGTAGGCGGTTAACATT
TTGACGGAGCCAAGGAAGCCTCTTCTTCAAGCCGCTTCGGCCGGCAGGCA
CCTGGACTGCAGGCACGGCCCCCTCCCATCGCCTCGTGACAGCGTGGGTG
TAGGAAGGACCAGGGAAGCGTCCGCCGCAACGCTCACACGCACACGTCGA
AAGAAAAAGGGTCCCCTCTGAGGGCACGCGAAGCGCTCGGATTGTTAGGG
TCTTTGCAGGGAGCTTGGGAGGCTTGTCAGCGTATGTCCACGTCGCCACT
ATCGCCCACAGGGAACGGCGTTCGGGGGAGGTCGGAAGGAGCAGGAGAAG
ACGCGGGAGCGCTGCGTCGGTGGAGCAAGGGAGGGGAAGAATGTGAGGGG
GACCAGGCGAGGGGCGAGGACGGCAAGGTGGGCCGGAGGGTCGACGACGA
CATGCTGAATTACGGCGACAGGAGGGTCGACGACGACATGCTGAATTACG
GCGACGCCAAAGAAAAGGAGGATGGGCACGCAGAGACGGAAGAGGACGAG
GACGGCAGCCAGGCAAGTGGTGACTTTGGTGTGGGCCGGGAGGAGGAGGG
AGGGGAGGAGGAGCCGAGACCGGAGGTGGATCTTAAGCCTAGGGCGGAGG
AGGTTCCCACGGCGGGCGTCGAACGGCGGCGAAGCCGGCGGGAAACCCGA
GGCCGTCATTCGCTCCGGGAGGGGGAAGAGGAGGGAGGGTTGCGGGGCTT
GGGGCAGGGCTCGAACGCGAGTGTGATAAGTGGAGGTAGTCAGGGAGGAC
GGCGAGGGCCCAAGGGCGGGAAACAGGCGCGATCGGGGGGAAGCAACAGC
AATAGCGGTGGCAAAGCCGCGCACGCCCAGCCACAGGACCTCCAATACTA
CGACATGGACGATTTTATGGAAGGGGAAGGGGGCAGTGGGCCTGGGAAAA
AATGCGCGAAAAAATCACGGCGGGAATTGCCCAACGGGGCGGTGGCCACT
TTGAAAGGCTGGCTGCTTTCCCCCGAGCACATCGCCCATCCCTACCCAAC
GGCACAGGACCAAGTGGCGTTGATGGCGGCGACGGGCATCGACAAGAAGC
AGTTGAAAAATTGGTTCACGAACGCGCGCCGACGCATTTGGAAACCAATG
CTGCGGCGTCAGACGGACGAATCGGGGGGTCCGGGGCGTGTCTCGCGAGG
AGGAGGGGCGGGATTGGACGGGGGAGGTGTGGGGAATGGAGCAGGCTTGC
CACCTTCCCCTTCGTCCTCCACCGCGCGGGGGGGGTTGGCCCCTGGGAGC
CTGCAGCTCCCGCCCCACTACCATCCCTCCGGGGCCCTTGCCCGATCACC
CTCCCCCCTATCCCCTTCCGGGATGGGTTTGGGCAGCCCCCCCCTCCACA
ACCACAGCGCCCTCGACAGTTTTACCAGCCGGAGCGCGGCCGCTTCGCCC
GAACCGTTTTCTCCCCGACTCTACCGGTCGGGTCAGCAGCAGCTCCATAC
GTCTTCCCCGATCTCCCCCAGTGCCGCCGAGGCGGCCGCCGCCGCCGCGG
TGGCTTTCTCATCCCGGCAGCACCAGCAACACCACCTGCTGAGCGAGCAT
CCGATGGGGGGGGGGCACATGCCTGTTGCCGGGATGGGGGGGGGGAAAGG
GTCGGGAACGGGCGTGTTTTATCCACGCCACACAAGCTCGGGCCTGCCGC
CGCCGCCACAGCAGCCCCCAAGCGCGACCACGGGGGGAGGCGGGGGAGGA
ATGACGACCATGGGGTCGCTGGGCACCTTGAGTGGCTTTGCGAGCGTGGA
GGATTTTTTCAAGAATTTTCTCGGGGATGGGAGCAACAGCCCCCTGAATG
CGGCTGGGAAGGAAGGAGGCCAACCGGCGCTGATGAAAACGTTTTCTTCT
CGGAGTTTCGGGAATTTTCGGACGAGTTCGTCCTTGAGTGATTTTCCGCG
AACGGATTCGTACGCGTTCCTGGAAGTGTTTTTCAATGACGACGGCTTGG
ACGGCTTGGGAGGAGGGGGAGGGCGGGAGGGAGGGAAGGGGGGAGGGAGG
GAGGAGAACATCGGGTTGTCCATGGACGACGACATGGTTCTGGGCGGAAC
GACGGGCACGGCGACGATGCAGGGCCCCGGCCTGGGGGGGGGCGTAAAGC
GGGGCATCTCCAGCGTGTCGGTGGGGGAAGAGGAGCCAGCCGCAGGCGCG
AACTCCTCCAGGATGAAGCGTCAGGCACGCGAGCAGGGGCAAGGAGGCTA
CGAGTCCTTCTCCCCCACGCCCATGCTGGAAGCGCAGGTGGGGTCGGAGG
GCGGGACGGAGGGCGGGGAACGGCCTCCTCATGTGCCACTTCCAGCACTG
CACCTGCCTGGCTCGAGGCCCTCCTCCGGAAGCCACTCTCCTAGGAGCAG
GTCCGGCTCTCCCCTGCACGCGGGGGGTGGGGCGGGGCCTGTCTACCACG
CTTTTTTCAAGGTGGGGAGCCACGGGAATGTGGTCCCGTCCGGGGCCGTG
ATGGGCACCAGCGGGGTCTCCTTCCCTCATCCTCCCGAGGGGGGTGCGCC
GGGAATGGAGCAGGTTTCTTCCTCCTTGGGAGGGAGGGGGGAGGGAGAAA
GCATTGGTGGGGGGCCAGGACCCAGTGGGGAAGGCGTTGGGAGGGAGGGT
GGGGTTGGCAAGGGAGGCTTGAGCCGATCGCCGACCTTGCAAGAGGTGAT
GATGGAGCAGTATTACCAGCACCACCAGCCGCCTCCGTCCGGGCCTGACT
CACACGCGTCTGCCCGCCCGGCCTCCCCCCCCTCTTCGGAGCCTGTGCAC
GTCTCGACGGGGGCCCGCTGCCCCTTTTGCCCGACCTTGAGCGTGGACAC
TCAATTGCGACCCTGCGGCCACCTCTTCCACGGGAACTGCCTCAAACCCT
GGCTCCAGAAATCCCCGTCGCCCCCGGCATGCCCTGTGTGTCGCGAAAGC
ATTGCTTCCTGCGTGTTGGCCATTCCTTGCATTGCCACGGGGGCCTCCTT
CGACTCGTTGCCGCCCGTGGCGGGCGAAGGCGAAGGCGGGGGGGCAGGGA
GGACGGTGGAAGGGCCCGAGCATGGGAAGGAAAGGCTGGAGGCGGAGTCG
TCGGCAGTGCAAATGGCGGGGAGCCACGTTTAAAGAACGAGGGGAGGGAG
AGAGAGGCGGGATGAATGCCGGTGGCTGGGTGTTCCCCGGAACGCGGAGT
ATCCACACGGAGGCGTGTGGAAAGGGCCTGAGGGATTTTGTCTGTAAGGG
CTCTCTCTCCACCTACATGATGGAGAGGGAGGACAGGCAGGAGGAGAGTG
GGACGCTATAGTCTCACTTGGGAAGAGAAGAACGGTAGAGGAGGAGGGAA
GGAAAGACAAAGGGGGGTTGCGTTTGAACGTGTGTACATGTGCGGTTTCA
CATGGTATTCTACTTATTTAGTACGATGGAGATGGATGCAAGCGGAGTGA
ATGACCTTAACGTAAAAGGAGAGTGAAATGCGGGTAGCGCTGCACGTGCA
GAAAAGGGAAAAATCGACCGTATCCACCGGGCAGGCGCACGGAGCGACGC
GCGCATCGTGTGACGAAAGGGGGCGCTGACCGTGTGTCGAAAGGGGGCGC
TGACCGTGTGATGCTCGGCGCGATCGGATGGCTTGTGCCCGTGCAGAGTC
CCTCCGGTCCCTTTCACGTGAGCCTTGGGGGCCGCGGATAAAAGCACGAG
CCGGTGCAGGCCAAGGCAGACATTATTTGGGGGGTTTGAGACACATTGGG
TCGTTGGGAAGTAAGGGCAATGACAGCAGCATGCGTGTGGACGAAGTAAT
GCCCGTCTAGGAGCATGAAAGTACAGGCAACGACAAGAAAACACGGGTGT
TCAAAGGTATCACTGTACGTGTGTGAGCACAGCAGTGCAGTATGCACTGC
GAGGGCTGTCGATAGGTAGCAGTACGGATTTTACTGCCACAACCACGACA
GATAAAATCATGAATGCACAAGCAACAGCAGAAGTGTGTATATTATGGTT
AAGATCCTCGCTTTAATTTCTCGGTGAACTCAATATGAAAGAACAAAAAA
GGGATGGAGTGATAAAATTTTGAAGAGACGAATGATGTATTTTCCGGGTG
AAATATAGTTTTTTTTCCCGGACTTAATTGGTCTTATTATTTCCATTGAA
ATGTGCACGCACAACAACAGCCTCAACACCTTAAGCTGGCGGT back to topprotein sequence of rna3364 >rna3364-protein ID=rna3364-protein|Name=rna3364|organism=Nannochloropsis gaditana|type=polypeptide|length=419bp
MSRRTTLSSLEAERAHSFYELNVPGSLPPDLTPQTEEAQRSQSNISQAPD
NNDGHEKNGDAGVEKEEGEGEAAEQSPLVLEPLPIPSPPPASMPQISSAA
FPSEHHHHHVSLHAPPPVHPMQAPPAHHPYHPHHLPPGMGPCAPMSATQL
PPGPYNGGSMYAPALSTMNPHYPHAAGSGPGTMPPGPRPSPSQAWNAPPA
LPTAADTEALPIKTGKFSKSESQAILHAVQEYCEAHDVSVHRLCSENAHR
GDLKGAWLKIAKVLPNRTVQAVYRHGLRKLHSFKRGKWTEEEERKLMELV
EVRGQKWVKFQEVLNRSADACRDKHRELATGWAAKAWARKGAEGYPEEAR
GPPTAVEGEEAGKEEGRGGGGEKGGRSAEGDLGRRVPLLSSSSSSVPSSS
SSSAEEGAEEGGKKGERRG back to topmRNA from alignment at CM002461.1:226127..227490+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna3364 ID=rna3364|Name=rna3364|organism=Nannochloropsis gaditana|type=mRNA|length=1364bp|location=Sequence derived from alignment at CM002461.1:226127..227490+ (Nannochloropsis gaditana)
CGACTTTTCCTTCTGACCATGACTAGGATGCCCCCCCCGTTCACTTGCTT
TCCTGTGCATGCACTTATGTACAGGCGTTTCTGCGCCATTCGTACAACGC
GGTCATGAGTCGGCGGACGACTTTATCAAGTCTCGAGGCTGAGAGAGCAC
ACTCCTTCTACGAGTTAAACGTGCCTGGGAGCTTGCCGCCAGACTTGACT
CCCCAAACGGAAGAAGCACAGAGAAGCCAATCAAACATCTCGCAGGCCCC
CGACAACAACGATGGCCATGAGAAAAACGGAGATGCcggggtggagaagg
aggaaggagagggtgaagCAGCCGAGCagtcccccctcgtcctcgaacct
ctacccatcccctcccctcctccagcctccatGCCTCAGATATCGAGCGC
CGCGTTTCCCTCCGAgcaccaccatcaccatGTGTCGTTGCACGCACCGC
CGCCTGTCCATCCCATGCAAGCTCCGCCCGCCCACCATCCTTACCaccct
caccacctccctcccggaaTGGGGCCCTGCGCCCCGATGTCTGCAACCCA
GcttccccctggcccttACAATGGCGGCTCCATGTACGCACCCGCTCTTT
CTACGATGAATCCTCACTACCCCCACGCGGCTGGCTCTGGACCAGGCACC
ATGCCCCCTGGTCCCCGACCGTCGCCCTCTCAAGCCTGGAatgccccccc
ggcccttccaACTGCTGCGGACACCGAGGCCCTTCCCATTAAGACGGGGA
AATTCAGCAAAAGCGAATCGCAGGCGATTTTGCACGCGGTCCAAGAGTAT
TGCGAGGCCCACGACGTGAGCGTGCACCGCCTGTGCTCGGAGAATGCTCA
CCGGGGCGACTTGAAAGGCGCCTGGTTGAAAATCGCCAAGGTGCTCCCGA
ACCGGACCGTCCAAGCCGTCTACCGGCACGGCTTAAGGAAACTGCACTCC
TTCAAGCGGGGGAAatggacggaggaggaggaacggaagctgatggagct
ggtggaggtgcgCGGCCAGAAGTGGGTCAAGTTCCAGGAGGTGTTGAACC
GCTCCGCTGACGCCTGTAGAGACAAGCACAGGGAGCTGGCGACGGGGTGG
GCGGCCAAGGCatgggcaaggaagggggcggaagggtacccggaggaggc
gcgggggCCGCCgacggcggtggaaggggaggaggcggggaaggaggaag
ggcggggggggggcggggagaagggcgggcggagtgcggagggagacttg
ggaaggagggtgccgttgctctcttcctcctcctcctccgtgccctcctc
ttcctcctcgtcggcggaggaaggggcggaggaaggggggaagaaggggg
aaaggagggggtga back to topCoding sequence (CDS) from alignment at CM002461.1:226127..227490+ >rna3364 ID=rna3364|Name=rna3364|organism=Nannochloropsis gaditana|type=CDS|length=1260bp|location=Sequence derived from alignment at CM002461.1:226127..227490+ (Nannochloropsis gaditana)
ATGAGTCGGCGGACGACTTTATCAAGTCTCGAGGCTGAGAGAGCACACTC
CTTCTACGAGTTAAACGTGCCTGGGAGCTTGCCGCCAGACTTGACTCCCC
AAACGGAAGAAGCACAGAGAAGCCAATCAAACATCTCGCAGGCCCCCGAC
AACAACGATGGCCATGAGAAAAACGGAGATGCcggggtggagaaggagga
aggagagggtgaagCAGCCGAGCagtcccccctcgtcctcgaacctctac
ccatcccctcccctcctccagcctccatGCCTCAGATATCGAGCGCCGCG
TTTCCCTCCGAgcaccaccatcaccatGTGTCGTTGCACGCACCGCCGCC
TGTCCATCCCATGCAAGCTCCGCCCGCCCACCATCCTTACCaccctcacc
acctccctcccggaaTGGGGCCCTGCGCCCCGATGTCTGCAACCCAGctt
ccccctggcccttACAATGGCGGCTCCATGTACGCACCCGCTCTTTCTAC
GATGAATCCTCACTACCCCCACGCGGCTGGCTCTGGACCAGGCACCATGC
CCCCTGGTCCCCGACCGTCGCCCTCTCAAGCCTGGAatgcccccccggcc
cttccaACTGCTGCGGACACCGAGGCCCTTCCCATTAAGACGGGGAAATT
CAGCAAAAGCGAATCGCAGGCGATTTTGCACGCGGTCCAAGAGTATTGCG
AGGCCCACGACGTGAGCGTGCACCGCCTGTGCTCGGAGAATGCTCACCGG
GGCGACTTGAAAGGCGCCTGGTTGAAAATCGCCAAGGTGCTCCCGAACCG
GACCGTCCAAGCCGTCTACCGGCACGGCTTAAGGAAACTGCACTCCTTCA
AGCGGGGGAAatggacggaggaggaggaacggaagctgatggagctggtg
gaggtgcgCGGCCAGAAGTGGGTCAAGTTCCAGGAGGTGTTGAACCGCTC
CGCTGACGCCTGTAGAGACAAGCACAGGGAGCTGGCGACGGGGTGGGCGG
CCAAGGCatgggcaaggaagggggcggaagggtacccggaggaggcgcgg
gggCCGCCgacggcggtggaaggggaggaggcggggaaggaggaagggcg
gggggggggcggggagaagggcgggcggagtgcggagggagacttgggaa
ggagggtgccgttgctctcttcctcctcctcctccgtgccctcctcttcc
tcctcgtcggcggaggaaggggcggaggaaggggggaagaagggggaaag
gagggggtga back to top
|