EWM27318.1, cds3355 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27318.1 vs. NCBI_GenBank
Match: gi|585109518|gb|EWM27318.1| (myb-like dna-binding domain-containing protein [Nannochloropsis gaditana]) HSP 1 Score: 843.573 bits (2178), Expect = 0.000e+0 Identity = 419/419 (100.00%), Postives = 419/419 (100.00%), Query Frame = 0 Query: 1 MSRRTTLSSLEAERAHSFYELNVPGSLPPDLTPQTEEAQRSQSNISQAPDNNDGHEKNGDAGVEKEEGEGEAAEQSPLVLEPLPIPSPPPASMPQISSAAFPSEHHHHHVSLHAPPPVHPMQAPPAHHPYHPHHLPPGMGPCAPMSATQLPPGPYNGGSMYAPALSTMNPHYPHAAGSGPGTMPPGPRPSPSQAWNAPPALPTAADTEALPIKTGKFSKSESQAILHAVQEYCEAHDVSVHRLCSENAHRGDLKGAWLKIAKVLPNRTVQAVYRHGLRKLHSFKRGKWTEEEERKLMELVEVRGQKWVKFQEVLNRSADACRDKHRELATGWAAKAWARKGAEGYPEEARGPPTAVEGEEAGKEEGRGGGGEKGGRSAEGDLGRRVPLLSSSSSSVPSSSSSSAEEGAEEGGKKGERRG 419 MSRRTTLSSLEAERAHSFYELNVPGSLPPDLTPQTEEAQRSQSNISQAPDNNDGHEKNGDAGVEKEEGEGEAAEQSPLVLEPLPIPSPPPASMPQISSAAFPSEHHHHHVSLHAPPPVHPMQAPPAHHPYHPHHLPPGMGPCAPMSATQLPPGPYNGGSMYAPALSTMNPHYPHAAGSGPGTMPPGPRPSPSQAWNAPPALPTAADTEALPIKTGKFSKSESQAILHAVQEYCEAHDVSVHRLCSENAHRGDLKGAWLKIAKVLPNRTVQAVYRHGLRKLHSFKRGKWTEEEERKLMELVEVRGQKWVKFQEVLNRSADACRDKHRELATGWAAKAWARKGAEGYPEEARGPPTAVEGEEAGKEEGRGGGGEKGGRSAEGDLGRRVPLLSSSSSSVPSSSSSSAEEGAEEGGKKGERRG Sbjct: 1 MSRRTTLSSLEAERAHSFYELNVPGSLPPDLTPQTEEAQRSQSNISQAPDNNDGHEKNGDAGVEKEEGEGEAAEQSPLVLEPLPIPSPPPASMPQISSAAFPSEHHHHHVSLHAPPPVHPMQAPPAHHPYHPHHLPPGMGPCAPMSATQLPPGPYNGGSMYAPALSTMNPHYPHAAGSGPGTMPPGPRPSPSQAWNAPPALPTAADTEALPIKTGKFSKSESQAILHAVQEYCEAHDVSVHRLCSENAHRGDLKGAWLKIAKVLPNRTVQAVYRHGLRKLHSFKRGKWTEEEERKLMELVEVRGQKWVKFQEVLNRSADACRDKHRELATGWAAKAWARKGAEGYPEEARGPPTAVEGEEAGKEEGRGGGGEKGGRSAEGDLGRRVPLLSSSSSSVPSSSSSSAEEGAEEGGKKGERRG 419
BLAST of EWM27318.1 vs. NCBI_GenBank
Match: gi|553190884|ref|XP_005855284.1| (myb-like dna-binding domain-containing protein, partial [Nannochloropsis gaditana CCMP526] >gi|422293775|gb|EKU21075.1| myb-like dna-binding domain-containing protein, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 473.781 bits (1218), Expect = 7.077e-166 Identity = 229/229 (100.00%), Postives = 229/229 (100.00%), Query Frame = 0 Query: 136 PPGMGPCAPMSATQLPPGPYNGGSMYAPALSTMNPHYPHAAGSGPGTMPPGPRPSPSQAWNAPPALPTAADTEALPIKTGKFSKSESQAILHAVQEYCEAHDVSVHRLCSENAHRGDLKGAWLKIAKVLPNRTVQAVYRHGLRKLHSFKRGKWTEEEERKLMELVEVRGQKWVKFQEVLNRSADACRDKHRELATGWAAKAWARKGAEGYPEEARGPPTAVEGEEAGKE 364 PPGMGPCAPMSATQLPPGPYNGGSMYAPALSTMNPHYPHAAGSGPGTMPPGPRPSPSQAWNAPPALPTAADTEALPIKTGKFSKSESQAILHAVQEYCEAHDVSVHRLCSENAHRGDLKGAWLKIAKVLPNRTVQAVYRHGLRKLHSFKRGKWTEEEERKLMELVEVRGQKWVKFQEVLNRSADACRDKHRELATGWAAKAWARKGAEGYPEEARGPPTAVEGEEAGKE Sbjct: 1 PPGMGPCAPMSATQLPPGPYNGGSMYAPALSTMNPHYPHAAGSGPGTMPPGPRPSPSQAWNAPPALPTAADTEALPIKTGKFSKSESQAILHAVQEYCEAHDVSVHRLCSENAHRGDLKGAWLKIAKVLPNRTVQAVYRHGLRKLHSFKRGKWTEEEERKLMELVEVRGQKWVKFQEVLNRSADACRDKHRELATGWAAKAWARKGAEGYPEEARGPPTAVEGEEAGKE 229
BLAST of EWM27318.1 vs. NCBI_GenBank
Match: gi|1210518790|dbj|GAX22336.1| (Myb-like DNA-binding protein REB1 [Fistulifera solaris]) HSP 1 Score: 158.303 bits (399), Expect = 9.207e-42 Identity = 70/125 (56.00%), Postives = 94/125 (75.20%), Query Frame = 0 Query: 213 KTGKFSKSESQAILHAVQEYCEAHDVSVHRLCSENAHRGDLKGAWLKIAKVLPNRTVQAVYRHGLRKLHSFKRGKWTEEEERKLMELVEVRGQKWVKFQEVLNRSADACRDKHRELATGWAAKAW 337 ++GKFSK ES+ I +A++E+C DV+V RLCSE H+ +LKGAW++I+K LP R+VQ+VYRHG+RKLH FKRG WTEEE L +LV+ G+KW Q LNRSAD+CRDK+RE++ + W Sbjct: 30 QSGKFSKEESEKIRNAIEEFCRTRDVTVARLCSECDHKAELKGAWMEISKCLPERSVQSVYRHGIRKLHPFKRGAWTEEETTLLSDLVQRMGKKWSAIQAKLNRSADSCRDKYREMSEEFLKGRW 154
BLAST of EWM27318.1 vs. NCBI_GenBank
Match: gi|1210531155|dbj|GAX10256.1| (Myb-like DNA-binding protein REB1 [Fistulifera solaris]) HSP 1 Score: 157.918 bits (398), Expect = 1.056e-41 Identity = 70/125 (56.00%), Postives = 94/125 (75.20%), Query Frame = 0 Query: 213 KTGKFSKSESQAILHAVQEYCEAHDVSVHRLCSENAHRGDLKGAWLKIAKVLPNRTVQAVYRHGLRKLHSFKRGKWTEEEERKLMELVEVRGQKWVKFQEVLNRSADACRDKHRELATGWAAKAW 337 ++GKFSK ES+ I +A++E+C DV+V RLCSE H+ +LKGAW++I+K LP R+VQ+VYRHG+RKLH FKRG WTEEE L +LV+ G+KW Q LNRSAD+CRDK+RE++ + W Sbjct: 30 QSGKFSKEESEKIRNAIEEFCRTRDVTVARLCSECDHKAELKGAWMEISKCLPQRSVQSVYRHGIRKLHPFKRGAWTEEETTLLSDLVQRMGKKWSAIQAKLNRSADSCRDKYREMSEEFLKGRW 154
BLAST of EWM27318.1 vs. NCBI_GenBank
Match: gi|219124799|ref|XP_002182683.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217406029|gb|EEC45970.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 151.369 bits (381), Expect = 1.504e-38 Identity = 66/125 (52.80%), Postives = 94/125 (75.20%), Query Frame = 0 Query: 213 KTGKFSKSESQAILHAVQEYCEAHDVSVHRLCSENAHRGDLKGAWLKIAKVLPNRTVQAVYRHGLRKLHSFKRGKWTEEEERKLMELVEVRGQKWVKFQEVLNRSADACRDKHRELATGWAAKAW 337 ++GKFSK ES+ + +V+E+C A +S RLCSE H+ +LKGAW++IAK LP+R+VQ+VYRHG+R+LH FKRG W++ E +L+ELV+ G+KW Q LNRSAD+CRDK+RE++ + W Sbjct: 51 QSGKFSKDESELVRKSVEEFCAAKQISTARLCSECDHKAELKGAWMEIAKQLPHRSVQSVYRHGIRQLHPFKRGAWSDTECTQLVELVQRLGKKWSSIQSKLNRSADSCRDKYREMSDEYVRGRW 175
BLAST of EWM27318.1 vs. NCBI_GenBank
Match: gi|1072233937|gb|OEU18667.1| (hypothetical protein FRACYDRAFT_150307, partial [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 144.821 bits (364), Expect = 1.767e-37 Identity = 66/126 (52.38%), Postives = 89/126 (70.63%), Query Frame = 0 Query: 212 IKTGKFSKSESQAILHAVQEYCEAHDVSVHRLCSENAHRGDLKGAWLKIAKVLPNRTVQAVYRHGLRKLHSFKRGKWTEEEERKLMELVEVRGQKWVKFQEVLNRSADACRDKHRELATGWAAKAW 337 I+TGK++K E++ + AV+ YC +SV RLCSE H+ +LKGAW++IAK LP+R+VQ+VYRHGLR+LH FKRG W++EE L+ V G+KW Q LNRSAD+CRDK RE+ + W Sbjct: 23 IRTGKYNKEETETVKRAVENYCAVKQISVARLCSECDHKAELKGAWMEIAKELPHRSVQSVYRHGLRQLHPFKRGTWSDEEVEILITSVTQYGKKWASIQTKLNRSADSCRDKFREIDDSYIRGRW 148
BLAST of EWM27318.1 vs. NCBI_GenBank
Match: gi|397644357|gb|EJK76359.1| (hypothetical protein THAOC_01880 [Thalassiosira oceanica]) HSP 1 Score: 115.546 bits (288), Expect = 8.474e-25 Identity = 60/144 (41.67%), Postives = 85/144 (59.03%), Query Frame = 0 Query: 211 PIKTGK-FSKSESQAILHAVQEYCEAHDVSVHRLC---SENAHRGDLKGAWLKIAKVLPNRTVQAVYRHGLRKLHSFKRGKWTEEEERKLMELVEVRGQKWVKFQEVLNRSADACRDKHRELATGWAAKAWARKGAEGYPEEAR 350 P+ TG +S+ E + + AV +YCE++DV+V +LC H ++GAW IA+ LP+RTV +VYR LR+ H+ RGKW+E+E R L+ LVE+ G KW Q+ L RSA CR K +L G W+ E + AR Sbjct: 28 PVFTGSMYSEDEVRTLQLAVHDYCESNDVTVSQLCGGADHTVHNKRIRGAWQVIAQCLPHRTVLSVYRKALRRFHTHTRGKWSEDEIRSLLRLVELHGHKWKSIQDKLGRSATDCRLKFFDLTDGCKRGKWSLDEVEALLKAAR 171
BLAST of EWM27318.1 vs. NCBI_GenBank
Match: gi|299472574|emb|CBN78226.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 116.701 bits (291), Expect = 8.594e-25 Identity = 54/119 (45.38%), Postives = 80/119 (67.23%), Query Frame = 0 Query: 212 IKTGKFSKSESQAILHAVQEYCEAHDVSVHRLCSENAHRGDLKGAWLKIAKVLPNRTVQAVYRHGLRKLHSFKRGKWTEEEERKLMELVEVRGQKWVKFQEVLNRSADACRDKHRELAT 330 +K GK+S +ES+ ++ A++ Y A+ ++V LC + + K AWL IA LP+R+VQ++YRHG+R+LH K G WT+EE +L LV G+KW + + + RSADACRDK REL + Sbjct: 1 MKGGKYSNTESKIVVDAIKSYASANAITVDSLCQDGSRSVGSKRAWLSIANCLPDRSVQSIYRHGIRQLHGRKMGAWTDEEVAQLKLLVSTHGKKWSEIGKKVGRSADACRDKSRELIS 119
BLAST of EWM27318.1 vs. NCBI_GenBank
Match: gi|545360933|ref|XP_005645803.1| (hypothetical protein COCSUDRAFT_57161 [Coccomyxa subellipsoidea C-169] >gi|384247773|gb|EIE21259.1| hypothetical protein COCSUDRAFT_57161 [Coccomyxa subellipsoidea C-169]) HSP 1 Score: 90.1225 bits (222), Expect = 6.086e-16 Identity = 59/140 (42.14%), Postives = 77/140 (55.00%), Query Frame = 0 Query: 206 DTEALPIKTGKFSKSESQAILHAVQEYCEAHDVSVHRL----CSENAH---RGDLKGAWLKIAKVLPNRTVQAVYRHGLRKLH--SFKRGKWTEEEERKLMELVEVRGQKWVKFQEVLNRSADACRDKHRELATGWAAKA 336 D + +K GKFS +E AI AV+EY EAH +S L C+ + R +GAW IA LP+R +AV+ G R LH ++K GKWT E+ KL EL +G +WV+ L R +A RDK R L G A KA Sbjct: 173 DYKRTNVKHGKFSSAERDAIRQAVKEYAEAHQLSQTDLDWLYCTRKSSAEARRRTEGAWTSIAAALPHRKAKAVWSCGTRMLHLGNYK-GKWTAEDVEKLKELHAAKGDRWVEMGASLGRLPEAVRDKFRTLKLGDARKA 311
BLAST of EWM27318.1 vs. NCBI_GenBank
Match: gi|1205226581|gb|OWB73055.1| (hypothetical protein B5S31_g2787 [[Candida] boidinii]) HSP 1 Score: 83.9593 bits (206), Expect = 1.315e-13 Identity = 45/114 (39.47%), Postives = 65/114 (57.02%), Query Frame = 0 Query: 217 FSKSESQAILHAVQEYCEAHDVSVHRLCSE---NAHRGDLKGAWLKIAKVLPNRTVQAVYRHGLRKLHSFK-RGKWTEEEERKLMELVEVRGQKWVKFQEVLNRSADACRDKHR 326 FSK E A+ +++YC+ H ++ +C + + D G W I KVLP RT ++Y+H R H FK RGKWTEEE++KL EL E+ +W K + R + CRD+ R Sbjct: 624 FSKEEISALDAFIKDYCKIHKITKEEICKRIWSDKRKKD--GFWESIQKVLPKRTRASIYKHVRRAYHVFKARGKWTEEEDKKLSELGELYKSQWKKIGLEMERMPEDCRDRWR 735 The following BLAST results are available for this feature:
BLAST of EWM27318.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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