EWM27318.1, cds3355 (CDS) Nannochloropsis gaditana

Overview
NameEWM27318.1
Unique Namecds3355
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:226231..227490 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27318.1
Productmyb-like dna-binding domain-containing protein
Orig transcript idgnl|cribi|Naga_100192g1.10346.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:226231..227490 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR017930Myb_dom
IPR017877Myb-like_dom
IPR009057Homeodomain-like
IPR001005SANT/Myb
Homology
BLAST of EWM27318.1 vs. NCBI_GenBank
Match: gi|585109518|gb|EWM27318.1| (myb-like dna-binding domain-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 843.573 bits (2178), Expect = 0.000e+0
Identity = 419/419 (100.00%), Postives = 419/419 (100.00%), Query Frame = 0
Query:    1 MSRRTTLSSLEAERAHSFYELNVPGSLPPDLTPQTEEAQRSQSNISQAPDNNDGHEKNGDAGVEKEEGEGEAAEQSPLVLEPLPIPSPPPASMPQISSAAFPSEHHHHHVSLHAPPPVHPMQAPPAHHPYHPHHLPPGMGPCAPMSATQLPPGPYNGGSMYAPALSTMNPHYPHAAGSGPGTMPPGPRPSPSQAWNAPPALPTAADTEALPIKTGKFSKSESQAILHAVQEYCEAHDVSVHRLCSENAHRGDLKGAWLKIAKVLPNRTVQAVYRHGLRKLHSFKRGKWTEEEERKLMELVEVRGQKWVKFQEVLNRSADACRDKHRELATGWAAKAWARKGAEGYPEEARGPPTAVEGEEAGKEEGRGGGGEKGGRSAEGDLGRRVPLLSSSSSSVPSSSSSSAEEGAEEGGKKGERRG 419
            MSRRTTLSSLEAERAHSFYELNVPGSLPPDLTPQTEEAQRSQSNISQAPDNNDGHEKNGDAGVEKEEGEGEAAEQSPLVLEPLPIPSPPPASMPQISSAAFPSEHHHHHVSLHAPPPVHPMQAPPAHHPYHPHHLPPGMGPCAPMSATQLPPGPYNGGSMYAPALSTMNPHYPHAAGSGPGTMPPGPRPSPSQAWNAPPALPTAADTEALPIKTGKFSKSESQAILHAVQEYCEAHDVSVHRLCSENAHRGDLKGAWLKIAKVLPNRTVQAVYRHGLRKLHSFKRGKWTEEEERKLMELVEVRGQKWVKFQEVLNRSADACRDKHRELATGWAAKAWARKGAEGYPEEARGPPTAVEGEEAGKEEGRGGGGEKGGRSAEGDLGRRVPLLSSSSSSVPSSSSSSAEEGAEEGGKKGERRG
Sbjct:    1 MSRRTTLSSLEAERAHSFYELNVPGSLPPDLTPQTEEAQRSQSNISQAPDNNDGHEKNGDAGVEKEEGEGEAAEQSPLVLEPLPIPSPPPASMPQISSAAFPSEHHHHHVSLHAPPPVHPMQAPPAHHPYHPHHLPPGMGPCAPMSATQLPPGPYNGGSMYAPALSTMNPHYPHAAGSGPGTMPPGPRPSPSQAWNAPPALPTAADTEALPIKTGKFSKSESQAILHAVQEYCEAHDVSVHRLCSENAHRGDLKGAWLKIAKVLPNRTVQAVYRHGLRKLHSFKRGKWTEEEERKLMELVEVRGQKWVKFQEVLNRSADACRDKHRELATGWAAKAWARKGAEGYPEEARGPPTAVEGEEAGKEEGRGGGGEKGGRSAEGDLGRRVPLLSSSSSSVPSSSSSSAEEGAEEGGKKGERRG 419          
BLAST of EWM27318.1 vs. NCBI_GenBank
Match: gi|553190884|ref|XP_005855284.1| (myb-like dna-binding domain-containing protein, partial [Nannochloropsis gaditana CCMP526] >gi|422293775|gb|EKU21075.1| myb-like dna-binding domain-containing protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 473.781 bits (1218), Expect = 7.077e-166
Identity = 229/229 (100.00%), Postives = 229/229 (100.00%), Query Frame = 0
Query:  136 PPGMGPCAPMSATQLPPGPYNGGSMYAPALSTMNPHYPHAAGSGPGTMPPGPRPSPSQAWNAPPALPTAADTEALPIKTGKFSKSESQAILHAVQEYCEAHDVSVHRLCSENAHRGDLKGAWLKIAKVLPNRTVQAVYRHGLRKLHSFKRGKWTEEEERKLMELVEVRGQKWVKFQEVLNRSADACRDKHRELATGWAAKAWARKGAEGYPEEARGPPTAVEGEEAGKE 364
            PPGMGPCAPMSATQLPPGPYNGGSMYAPALSTMNPHYPHAAGSGPGTMPPGPRPSPSQAWNAPPALPTAADTEALPIKTGKFSKSESQAILHAVQEYCEAHDVSVHRLCSENAHRGDLKGAWLKIAKVLPNRTVQAVYRHGLRKLHSFKRGKWTEEEERKLMELVEVRGQKWVKFQEVLNRSADACRDKHRELATGWAAKAWARKGAEGYPEEARGPPTAVEGEEAGKE
Sbjct:    1 PPGMGPCAPMSATQLPPGPYNGGSMYAPALSTMNPHYPHAAGSGPGTMPPGPRPSPSQAWNAPPALPTAADTEALPIKTGKFSKSESQAILHAVQEYCEAHDVSVHRLCSENAHRGDLKGAWLKIAKVLPNRTVQAVYRHGLRKLHSFKRGKWTEEEERKLMELVEVRGQKWVKFQEVLNRSADACRDKHRELATGWAAKAWARKGAEGYPEEARGPPTAVEGEEAGKE 229          
BLAST of EWM27318.1 vs. NCBI_GenBank
Match: gi|1210518790|dbj|GAX22336.1| (Myb-like DNA-binding protein REB1 [Fistulifera solaris])

HSP 1 Score: 158.303 bits (399), Expect = 9.207e-42
Identity = 70/125 (56.00%), Postives = 94/125 (75.20%), Query Frame = 0
Query:  213 KTGKFSKSESQAILHAVQEYCEAHDVSVHRLCSENAHRGDLKGAWLKIAKVLPNRTVQAVYRHGLRKLHSFKRGKWTEEEERKLMELVEVRGQKWVKFQEVLNRSADACRDKHRELATGWAAKAW 337
            ++GKFSK ES+ I +A++E+C   DV+V RLCSE  H+ +LKGAW++I+K LP R+VQ+VYRHG+RKLH FKRG WTEEE   L +LV+  G+KW   Q  LNRSAD+CRDK+RE++  +    W
Sbjct:   30 QSGKFSKEESEKIRNAIEEFCRTRDVTVARLCSECDHKAELKGAWMEISKCLPERSVQSVYRHGIRKLHPFKRGAWTEEETTLLSDLVQRMGKKWSAIQAKLNRSADSCRDKYREMSEEFLKGRW 154          
BLAST of EWM27318.1 vs. NCBI_GenBank
Match: gi|1210531155|dbj|GAX10256.1| (Myb-like DNA-binding protein REB1 [Fistulifera solaris])

HSP 1 Score: 157.918 bits (398), Expect = 1.056e-41
Identity = 70/125 (56.00%), Postives = 94/125 (75.20%), Query Frame = 0
Query:  213 KTGKFSKSESQAILHAVQEYCEAHDVSVHRLCSENAHRGDLKGAWLKIAKVLPNRTVQAVYRHGLRKLHSFKRGKWTEEEERKLMELVEVRGQKWVKFQEVLNRSADACRDKHRELATGWAAKAW 337
            ++GKFSK ES+ I +A++E+C   DV+V RLCSE  H+ +LKGAW++I+K LP R+VQ+VYRHG+RKLH FKRG WTEEE   L +LV+  G+KW   Q  LNRSAD+CRDK+RE++  +    W
Sbjct:   30 QSGKFSKEESEKIRNAIEEFCRTRDVTVARLCSECDHKAELKGAWMEISKCLPQRSVQSVYRHGIRKLHPFKRGAWTEEETTLLSDLVQRMGKKWSAIQAKLNRSADSCRDKYREMSEEFLKGRW 154          
BLAST of EWM27318.1 vs. NCBI_GenBank
Match: gi|219124799|ref|XP_002182683.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217406029|gb|EEC45970.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 151.369 bits (381), Expect = 1.504e-38
Identity = 66/125 (52.80%), Postives = 94/125 (75.20%), Query Frame = 0
Query:  213 KTGKFSKSESQAILHAVQEYCEAHDVSVHRLCSENAHRGDLKGAWLKIAKVLPNRTVQAVYRHGLRKLHSFKRGKWTEEEERKLMELVEVRGQKWVKFQEVLNRSADACRDKHRELATGWAAKAW 337
            ++GKFSK ES+ +  +V+E+C A  +S  RLCSE  H+ +LKGAW++IAK LP+R+VQ+VYRHG+R+LH FKRG W++ E  +L+ELV+  G+KW   Q  LNRSAD+CRDK+RE++  +    W
Sbjct:   51 QSGKFSKDESELVRKSVEEFCAAKQISTARLCSECDHKAELKGAWMEIAKQLPHRSVQSVYRHGIRQLHPFKRGAWSDTECTQLVELVQRLGKKWSSIQSKLNRSADSCRDKYREMSDEYVRGRW 175          
BLAST of EWM27318.1 vs. NCBI_GenBank
Match: gi|1072233937|gb|OEU18667.1| (hypothetical protein FRACYDRAFT_150307, partial [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 144.821 bits (364), Expect = 1.767e-37
Identity = 66/126 (52.38%), Postives = 89/126 (70.63%), Query Frame = 0
Query:  212 IKTGKFSKSESQAILHAVQEYCEAHDVSVHRLCSENAHRGDLKGAWLKIAKVLPNRTVQAVYRHGLRKLHSFKRGKWTEEEERKLMELVEVRGQKWVKFQEVLNRSADACRDKHRELATGWAAKAW 337
            I+TGK++K E++ +  AV+ YC    +SV RLCSE  H+ +LKGAW++IAK LP+R+VQ+VYRHGLR+LH FKRG W++EE   L+  V   G+KW   Q  LNRSAD+CRDK RE+   +    W
Sbjct:   23 IRTGKYNKEETETVKRAVENYCAVKQISVARLCSECDHKAELKGAWMEIAKELPHRSVQSVYRHGLRQLHPFKRGTWSDEEVEILITSVTQYGKKWASIQTKLNRSADSCRDKFREIDDSYIRGRW 148          
BLAST of EWM27318.1 vs. NCBI_GenBank
Match: gi|397644357|gb|EJK76359.1| (hypothetical protein THAOC_01880 [Thalassiosira oceanica])

HSP 1 Score: 115.546 bits (288), Expect = 8.474e-25
Identity = 60/144 (41.67%), Postives = 85/144 (59.03%), Query Frame = 0
Query:  211 PIKTGK-FSKSESQAILHAVQEYCEAHDVSVHRLC---SENAHRGDLKGAWLKIAKVLPNRTVQAVYRHGLRKLHSFKRGKWTEEEERKLMELVEVRGQKWVKFQEVLNRSADACRDKHRELATGWAAKAWARKGAEGYPEEAR 350
            P+ TG  +S+ E + +  AV +YCE++DV+V +LC       H   ++GAW  IA+ LP+RTV +VYR  LR+ H+  RGKW+E+E R L+ LVE+ G KW   Q+ L RSA  CR K  +L  G     W+    E   + AR
Sbjct:   28 PVFTGSMYSEDEVRTLQLAVHDYCESNDVTVSQLCGGADHTVHNKRIRGAWQVIAQCLPHRTVLSVYRKALRRFHTHTRGKWSEDEIRSLLRLVELHGHKWKSIQDKLGRSATDCRLKFFDLTDGCKRGKWSLDEVEALLKAAR 171          
BLAST of EWM27318.1 vs. NCBI_GenBank
Match: gi|299472574|emb|CBN78226.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 116.701 bits (291), Expect = 8.594e-25
Identity = 54/119 (45.38%), Postives = 80/119 (67.23%), Query Frame = 0
Query:  212 IKTGKFSKSESQAILHAVQEYCEAHDVSVHRLCSENAHRGDLKGAWLKIAKVLPNRTVQAVYRHGLRKLHSFKRGKWTEEEERKLMELVEVRGQKWVKFQEVLNRSADACRDKHRELAT 330
            +K GK+S +ES+ ++ A++ Y  A+ ++V  LC + +     K AWL IA  LP+R+VQ++YRHG+R+LH  K G WT+EE  +L  LV   G+KW +  + + RSADACRDK REL +
Sbjct:    1 MKGGKYSNTESKIVVDAIKSYASANAITVDSLCQDGSRSVGSKRAWLSIANCLPDRSVQSIYRHGIRQLHGRKMGAWTDEEVAQLKLLVSTHGKKWSEIGKKVGRSADACRDKSRELIS 119          
BLAST of EWM27318.1 vs. NCBI_GenBank
Match: gi|545360933|ref|XP_005645803.1| (hypothetical protein COCSUDRAFT_57161 [Coccomyxa subellipsoidea C-169] >gi|384247773|gb|EIE21259.1| hypothetical protein COCSUDRAFT_57161 [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 90.1225 bits (222), Expect = 6.086e-16
Identity = 59/140 (42.14%), Postives = 77/140 (55.00%), Query Frame = 0
Query:  206 DTEALPIKTGKFSKSESQAILHAVQEYCEAHDVSVHRL----CSENAH---RGDLKGAWLKIAKVLPNRTVQAVYRHGLRKLH--SFKRGKWTEEEERKLMELVEVRGQKWVKFQEVLNRSADACRDKHRELATGWAAKA 336
            D +   +K GKFS +E  AI  AV+EY EAH +S   L    C+  +    R   +GAW  IA  LP+R  +AV+  G R LH  ++K GKWT E+  KL EL   +G +WV+    L R  +A RDK R L  G A KA
Sbjct:  173 DYKRTNVKHGKFSSAERDAIRQAVKEYAEAHQLSQTDLDWLYCTRKSSAEARRRTEGAWTSIAAALPHRKAKAVWSCGTRMLHLGNYK-GKWTAEDVEKLKELHAAKGDRWVEMGASLGRLPEAVRDKFRTLKLGDARKA 311          
BLAST of EWM27318.1 vs. NCBI_GenBank
Match: gi|1205226581|gb|OWB73055.1| (hypothetical protein B5S31_g2787 [[Candida] boidinii])

HSP 1 Score: 83.9593 bits (206), Expect = 1.315e-13
Identity = 45/114 (39.47%), Postives = 65/114 (57.02%), Query Frame = 0
Query:  217 FSKSESQAILHAVQEYCEAHDVSVHRLCSE---NAHRGDLKGAWLKIAKVLPNRTVQAVYRHGLRKLHSFK-RGKWTEEEERKLMELVEVRGQKWVKFQEVLNRSADACRDKHR 326
            FSK E  A+   +++YC+ H ++   +C     +  + D  G W  I KVLP RT  ++Y+H  R  H FK RGKWTEEE++KL EL E+   +W K    + R  + CRD+ R
Sbjct:  624 FSKEEISALDAFIKDYCKIHKITKEEICKRIWSDKRKKD--GFWESIQKVLPKRTRASIYKHVRRAYHVFKARGKWTEEEDKKLSELGELYKSQWKKIGLEMERMPEDCRDRWR 735          
The following BLAST results are available for this feature:
BLAST of EWM27318.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109518|gb|EWM27318.1|0.000e+0100.00myb-like dna-binding domain-containing protein [Na... [more]
gi|553190884|ref|XP_005855284.1|7.077e-166100.00myb-like dna-binding domain-containing protein, pa... [more]
gi|1210518790|dbj|GAX22336.1|9.207e-4256.00Myb-like DNA-binding protein REB1 [Fistulifera sol... [more]
gi|1210531155|dbj|GAX10256.1|1.056e-4156.00Myb-like DNA-binding protein REB1 [Fistulifera sol... [more]
gi|219124799|ref|XP_002182683.1|1.504e-3852.80predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1072233937|gb|OEU18667.1|1.767e-3752.38hypothetical protein FRACYDRAFT_150307, partial [F... [more]
gi|397644357|gb|EJK76359.1|8.474e-2541.67hypothetical protein THAOC_01880 [Thalassiosira oc... [more]
gi|299472574|emb|CBN78226.1|8.594e-2545.38conserved unknown protein [Ectocarpus siliculosus][more]
gi|545360933|ref|XP_005645803.1|6.086e-1642.14hypothetical protein COCSUDRAFT_57161 [Coccomyxa s... [more]
gi|1205226581|gb|OWB73055.1|1.315e-1339.47hypothetical protein B5S31_g2787 [[Candida] boidin... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3364rna3364Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications