rna3353, rna3353 (mRNA) Nannochloropsis gaditana

Overview
Namerna3353
Unique Namerna3353
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2166
Alignment locationCM002461.1:192902..195106 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100393g5.8502.mrna
Orig protein idgnl|cribi|Naga_100393g5.8502
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:192902..195106 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100393g5gene3229Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27328.1cds3344Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3353rna3353-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3353 ID=rna3353|Name=rna3353|organism=Nannochloropsis gaditana|type=mRNA|length=2166bp
TGAAAGTTATACTGCGTCTCAACCTTACCTTACTGTGATTCTTTTTTTAA
AATGACCAACGCGTTGGGTTTACATGCAACCCAGATCCATGCATCCATGA
GCTGGTTGCGAGAATATCGGGAAGAAGAGCCCGAAGAAGTTGAAGAGGGG
CATGCAAAAGCACACTCAGGGTTGTTGCAGTTGGCCACGGCAGGGAAAGT
AACGATGGAATTGCGGGAAGCGCGCGACGCATGCAGGATAGGAGGCCAGG
CAACCCAGACACAATTATTCCCTCTCTATGGAAAAGTGAAAAATATTCTG
TCGCGTATACTGTTCTTTTATACAAGCTTCAACGCAGTCGATGATCGCTT
TGGGGTCGCCGAAGCGGACACCAGAGAGGTTCGGCGCATGGCCTTAACAG
CCCTGCAATTTTTGGCTAACGTGACTGCCGGGAACGCAGAGACCTCAGAA
CGGCTTTTCAAAGACGCACGCCAAGGGGCGATCATGGATTGGCTGGAGGG
TTTTGGACAGGATCGAAAGTTGTTGACGTGCACGTGTGTGGTCGTACACA
ATTATCTTGCCTGTGCGTCTCAAAAGAAAGCCGCGGTCAAGGATTTTTTA
GAGGAAGCCGCCTTGGTCACCAAACTCCTCCGGCTCGTCTTACCACCATC
GACACCTTCGTATCCTTCATCCTCCGTGTCCTCATCCTGCCGCGCCATGG
GTATTTCGGCGCCGCGCCATCATGACAGGCATCGGGGCCCTGCAGGGCAA
GCCGAGGGGGAAGAAGAGGACCCGGTGTTTGAATGGATCTATTTGATCCT
GCTTAAGGTGCTAGAAGCACAGGAAGGACTCAGAGCCTTTAATAAAAGTG
GATTGGATAGATATGCGCTGCATAAAGAGATGTTGACGTCGATACGGTCC
GTCTCGGCGAAGGCGCCCGGCCCACGCCGGGCTCCCCCACCCATCTTCAC
TGCAGAGCAGCTAGTGCTGCTTCACCTTGCAGAGCACACCTTGACAGACA
GGTTTTTAGAAACACAAGGACAGCAAAGAGACGATGCACCCTTGTTGTTG
CGGGACGGCGGCGTGTGGGTCCTCGAACTTGTGCACCGGGTCAAGGAATA
TCTCCACGCGAGAAGATTCTCGGCCCGACCAAGCACGGCCTCGGGTGCAA
AGGCAAGCAAGGGTAAAGAGGGACAGTATGAACAAGCGAGGCAACCCGAA
TGGCTCCTGCTGGACGAGGCTGTCGCCACGGTCATGCGCCTGATCGGTAC
CCTCCTTGCCAGGGAGGAAAGGCTGGAGGGAGGGCGGGAGAAAGGGAAGG
AGGACGGGCGCGAACTTAGGGATCTATTGCTTGAGCACGACGTCATCAGT
CTCATCCTGCAACTACTGCAAGGGGAAGGGGGGAAAGCGAACGGAGAGAT
CCCTCCCATGGACCGCGCGCGGAGCCACGGGGGCCCCGCAAGCACAGCCG
GCCCCGACGGCACTCAGCCATCGCCCTCTCTTCCCACCCCAGAAGGTCGA
AAAACCCGCTTGATTCAGGTATTGGGCAATCTCTGCCACGGCCATGGCCG
CGCGCAGGAGATGGTGCGGGAGCAACAGGGGTTGCCTCTAGTGTTGAACC
ACTGCAATGTGGATTCCGAGAACCCTTTCCTGAGGGAGTGGGCAGTGGTG
TGCGTCCGTTTCCTGTGCGACGACCCGGAAAATCGACGCGTGATTGCCTC
GCTCCAAGGGCAAGAGGTTGTACAGAGCCCAGTCATGCAAGAGATGGGGG
TGGATGCCCGGCTGGTAGCGGCCGAGCAGGGACGGCTCAGGCTCCATGTC
AAGAGGAGGAGTGTCGAGGGGGGGGATAAAGCAGGACCTTGAAGCCCTCC
GCAATTTTGATGAGAGGCCAACCAGTGACGCAAAAAGAAATAAGGGGCAC
AGTCTCTTCCTGCTCTGCCAGCCCGAGACCCGACGCGAGGACCCTCTAGA
AGGTCAAAGGGAGAAGCGGTACGTTGGTTGACTTGACCGTGACAAGGTTC
GCGTCCTTCGGCCTTCTCAGCCTCTCCTGTCTCCACCGTCGCCGCCCTTT
CTCTTTCAGCAACGCCAGTGCTCCTCTGTACATAACCCTCTCCCTCGCAA
ATTCTCAGGCTCACCCTCCGTCACCATGGTACACCCCCCCAAAAAATAAC
ACAATGGCTGCTTATC
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protein sequence of rna3353

>rna3353-protein ID=rna3353-protein|Name=rna3353|organism=Nannochloropsis gaditana|type=polypeptide|length=341bp
MVNRCWTLPMAMAIFAPVLLLGGIPLTNAFLHPLRPAKTDSLLAPSQRHA
AISGPMYAQRDVMKMVNPSEWQASWLQRIRSRVSPPVDKPSVSPVPSQKE
KKEQTPAKAASTSNSRSSPTVGVKNSDAKVPMPPQQLSRFTAAVIEEESA
HASAVEAEKRELKTLKGIPDTFLKDDIVANDNTVRQASAVVGALAGFALG
GPLLALVGAAWTSYSCTVTPSDAGEAARGTGKWALNVHNFMAKMNRKHGY
VQKLSQGLGGWYRRFRKETAPDATFLDVAESSVQSALEATDQLRKDLDVA
GPVEKALIKGGEWSAGGLRSLIRLNEENRVTERLWEVVAKR
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mRNA from alignment at CM002461.1:192902..195106-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3353 ID=rna3353|Name=rna3353|organism=Nannochloropsis gaditana|type=mRNA|length=2205bp|location=Sequence derived from alignment at CM002461.1:192902..195106- (Nannochloropsis gaditana)
TCCCTGCTTCTTGCCCTGGCCTCCACAAAACTGGGATAGGTCATGACGTG
AAATTACTTCCAAGATATGTATAGCCTTGTGATACACGTTTCATGCGTGA
GGTCTGGGAAAGAAAGTTTCTTTCTCCATGTCATCGCTAGCTCGTCAATG
AGTGCCGTTGGCCTTTGACATTGAAGCGTAACCCCGACCGCATCTTGTAA
GTGTTCCGCTACTCATTCCACTGTTCCCATCCATATTTACCCGCGGCAGG
CTCTATATTGCATTGGAGAATACGCCATGGTGAATCGTTGTTGGACGTTG
CCGATGGCCATGGCTATTTTTGCTCCTGTGCTACTTCTGGGCGGCATTCC
TTTAACAAATGCTTTTTTGCATCCTCTCCGTCCCGCCAAGACCGACTCCT
TGCTCGCTCCCTCACAGAGGCACGCGGCTATTTCTGGCCCTATGTATGCC
CAGCGGGATGTCATGAAAATGGTCAACCCGTCTGAATGGCAAGCGTCGTG
GTTGCAGCGGATTCGATCCCGTGTGAGCCCCCCGGTGGACAAGCCCTCTG
TCAGTCCTGTGCCGTCACAAAAAGAAAAGAAAGAGCAAACGCCAGCAAAA
GCGGCCAGCACTAGTAACAGTCGCTCTAGCCCTACTGTAGGGGTGAAAAA
CAGTGATGCCAAGGTACCAATGCCTCCTCAACAGTTAAGCCGTTTTACTG
CGGCTGTCATCGAGGAAGAGAGCGCTCACGCCAGTGCCGTGGAAGCAGAG
AAACGCGAGCTAAAAACCCTAAAAGGCATCCCCGACACCTTTTTGAAGGA
CGACATTGTTGCCAACGACAACACGGTCAGGCAGGCTTCGGCAGTTGTGG
GTGCGCTGGCCGGGTTTGCCCTGGGTGGTCCGTTGCTTGCCTTGGTGGGA
GCCGCTTGGACGAGTTATTCCTGCACAGTAACACCCTCCGACGCCGGTGA
GGCTGCCAGGGGCACGGGGAAATGGGCCCTGAATGTGCACAACTTCATGG
CGAAGATGAACCGGAAACATGGCTACGTGCAAAAACTCTCCCAAGGGCTG
GGTGGGTGGTACCGGCGGTTCCGAAAAGAAACGGCGCCGGACGCGACTTT
TTTGGATGTAGCCGAGTCATCGGTGCAAAGCGCATTGGAGGCCACGGACC
AGCTCCGGAAGGACCTGGATGTGGCGGGCCCGGTGGAGAAGGCTTTGATC
AAAGGGGGGGAGTGGAGCGCGGGGGGCCTGCGGAGCCTGATCCGTTTGAA
TGAGGAGAACAGGGTCACGGAGAGGTTGTGGGAGGTGGTGGCAAAGCGGT
GAGGAGACATGCCGTCCGTGAGGGTGGGGTCGTGTTAGATGATGAGGTTC
GGGGCCCCTGGCCTTAATTTCTTCTCGGAAGAAGGGAAAGGAAGAGGAAG
GGCAGGCGGCTCATTAGGGCGATAGCGGTTGAAAGAGAAGGCGGGAAGCT
GAGAAAGGAGGGGAGGCAATGACAAAGATAAAGTGGAGGGAGCGACGGGG
AGCACAGGGGTCGATTGATAAGCAGCCATTGTGTTATTTTTTGGGGGGGT
GTACCATGGTGACGGAGGGTGAGCCTGAGAATTTGCGAGGGAGAGGGTTA
TGTACAGAGGAGCACTGGCGTTGCTGAAAGAGAAAGGGCGGCGACGGTGG
AGACAGGAGAGGCTGAGAAGGCCGAAGGACGCGAACCTTGTCACGGTCAA
GTCAACCAACGTACCGCTTCTCCCTTTGACCTTCTAGAGGGTCCTCGCGT
CGGGTCTCGGGCTGGCAGAGCAGGAAGAGACTGTGCCCCTTATTTCTTTT
TGCGTCACTGGTTGGCCTCTCATCAAAATTGCGGAGGGCTTCAAGGTCCT
GCTTTATCCCCCCCCTCGACACTCCTCCTCTTGACATGGAGCCTGAGCCG
TCCCTGCTCGGCCGCTACCAGCCGGGCATCCACCCCCATCTCTTGCATGA
CTGGGCTCTGTACAACCTCTTGCCCTTGGAGCGAGGCAATCACGCGTCGA
TTTTCCGGGTCGTCGCACAGGAAACGGACGCACACCACTGCCCACTCCCT
CAGGAAAGGGTTCTCGGAATCCACATTGCAGTGGTTCAACACTAGAGGCA
ACCCCTGTTGCTCCCGCACCATCTCCTGCGCGCGGCCATGGCCGTGGCAG
AGATTGCCCAATACCTGAATCAAGCGGGTTTTTCGACCTTCTGGGGTGGG
AAGAG
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Coding sequence (CDS) from alignment at CM002461.1:192902..195106-

>rna3353 ID=rna3353|Name=rna3353|organism=Nannochloropsis gaditana|type=CDS|length=1026bp|location=Sequence derived from alignment at CM002461.1:192902..195106- (Nannochloropsis gaditana)
ATGGTGAATCGTTGTTGGACGTTGCCGATGGCCATGGCTATTTTTGCTCC
TGTGCTACTTCTGGGCGGCATTCCTTTAACAAATGCTTTTTTGCATCCTC
TCCGTCCCGCCAAGACCGACTCCTTGCTCGCTCCCTCACAGAGGCACGCG
GCTATTTCTGGCCCTATGTATGCCCAGCGGGATGTCATGAAAATGGTCAA
CCCGTCTGAATGGCAAGCGTCGTGGTTGCAGCGGATTCGATCCCGTGTGA
GCCCCCCGGTGGACAAGCCCTCTGTCAGTCCTGTGCCGTCACAAAAAGAA
AAGAAAGAGCAAACGCCAGCAAAAGCGGCCAGCACTAGTAACAGTCGCTC
TAGCCCTACTGTAGGGGTGAAAAACAGTGATGCCAAGGTACCAATGCCTC
CTCAACAGTTAAGCCGTTTTACTGCGGCTGTCATCGAGGAAGAGAGCGCT
CACGCCAGTGCCGTGGAAGCAGAGAAACGCGAGCTAAAAACCCTAAAAGG
CATCCCCGACACCTTTTTGAAGGACGACATTGTTGCCAACGACAACACGG
TCAGGCAGGCTTCGGCAGTTGTGGGTGCGCTGGCCGGGTTTGCCCTGGGT
GGTCCGTTGCTTGCCTTGGTGGGAGCCGCTTGGACGAGTTATTCCTGCAC
AGTAACACCCTCCGACGCCGGTGAGGCTGCCAGGGGCACGGGGAAATGGG
CCCTGAATGTGCACAACTTCATGGCGAAGATGAACCGGAAACATGGCTAC
GTGCAAAAACTCTCCCAAGGGCTGGGTGGGTGGTACCGGCGGTTCCGAAA
AGAAACGGCGCCGGACGCGACTTTTTTGGATGTAGCCGAGTCATCGGTGC
AAAGCGCATTGGAGGCCACGGACCAGCTCCGGAAGGACCTGGATGTGGCG
GGCCCGGTGGAGAAGGCTTTGATCAAAGGGGGGGAGTGGAGCGCGGGGGG
CCTGCGGAGCCTGATCCGTTTGAATGAGGAGAACAGGGTCACGGAGAGGT
TGTGGGAGGTGGTGGCAAAGCGGTGA
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Synonyms
Publications