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Properties
| Property Name | Value |
|---|
| Product | transcription initiation factor tfiid subunit 12 |
| Orig transcript id | gnl|cribi|Naga_100892g1.33.mrna |
| Orig protein id | gnl|cribi|Naga_100892g1.33 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002461.1 | supercontig | CM002461.1:182810..183717 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna3350 ID=rna3350|Name=rna3350|organism=Nannochloropsis gaditana|type=mRNA|length=2895bp
CACAGTCGTTGACTTGAACACTCTTAAGGGCGACCTACATGCACCTTCCA
TCCGCAAAATTGCCACCACCTTTTCCTCCACCACCACATTTTTACCGCTT
CCTTCTACTCGTCCTGGTATTCCCTTGGACGGATGCTTTTCTCGGCTTCC
GTCCGCGTCTTTTCGACTTGATTTCTCTGTCACATGGCGCGTTTACCTCC
CCTCAACCCCGCCTGTCGCTGCGCAGGCGATCCTGTCGATACAGCACCGG
CAGAACCAGTGGCAGTACTGGCATACCCTTTTCCCTTCAAGAATTGGGCG
TGGCAAGCATAAGATTCAATCGGGCAGATTTCCCGCCCACCCCCGACACA
CTTTTCCCAGCCTCCGTAGATTACCTCCTCACCTTGCCGGCAACAATTGG
AGGCGTCCCCTTTGAATTCACCCTTGACACAACCGCGTCCGTCAATTTGG
TCACCAAAGAAGTAGTCGAAGCCTCTTTGGGAACATCGCCGAAGGCATCG
GGGAAAAAGGGCTTCGGAAATGAGGCTAAAGGTGCAGGGGGGGGGAATGG
AGGAGGAGGAGGCTTCGGTGGGAAGCAGGATGCTTCATCTCCCGGGAAGG
GGAAGAAAGGAGAGAAGAAAAAGAAAAAAAAGAAGGAGGACAAGGAGTGG
GAGGATGCGGGCGGGTCTTTGATGGAGGCGGAAGGTGTGGCCTTCGAAAT
GACAGTGTCGTCCTCCCCCCCCGGGCTTCTGGTACCGGTCAAGGCAGTAG
TCTCCGAGGAATGGACGGGGGTGGGTGGAGGTTGTCTGGGGCTGCCTTTC
CTCCGTTCCTTTGGCGCGGTGGAGATCGACTGGAGGCGCATGCAAGGGAG
GCTGTGGGGGGGGAGGGACGGGCCCCAGGTCGTGGACGGCCTGGACAATT
GGCGGGAGAGCGAGGAAGGAGGAAAGGGGCAGGAAGGCGCGGAATGGAAA
ATAGATTTCGCGCCCTTGAGGATCAAAATGAATGCCCAAATGGCATTGGA
GGCGTTGGGGCAAGGCGAGGAGGAGGAGGATAAGAACGAGGAGGGCACCT
GCCCCGAAGTCTGGGTCGTGGATGTGCATTTGGATGGGAGCGAGGCTGGC
ATCCCGGCCATCGTGGATTTAGGCTGTCAAGCCAGCATCCTGAATTGGAA
AGCCGCCGAGGCGTTGGGGTACCGAAAGCCAACCTCGCCAGGAACGGCGG
GGGCGGTCGAGGTCCAGGCGGTGGAAGGTATCGAGGTGGCCTTTGCGGAC
AAGACCAGCCTCTCCCTCGGGGAGCCCCACGGGGTCCGCGTCCCCGCCCG
CCCGTTGGCGATTGCCGACCTTCCCGTCTTTGCCTACGCGGGCCTGGAGC
AGGTACCGGCCATGGTCCTGGGGCTCGACGTCTTGGGGAGTGTCCAGGAC
ACATTGGTCTTGGATTGGTCGCAGCGATGCCTGACCGTGGGAGGACCCCT
CTTGCCCGTCAAACGCAACCTGGCCGCGGTGGATATGCCGTTGATCAGGC
GAGAACAGGCGGTGGAAAGGGCGCCGGCGGGCGGTCAGGCTTACCAATAC
GGGGTGCCGGCCGTTCTGGGCGGGACGGAGAAGGAGGTGGTGTTGATGGT
GGACACTGCGGCGGGGTGCATGGCTGTGTCCCAGAAAGCTTGGGAGGCGT
ATGCCGACGCGCAGGGAGGGCGGGAGGGAGGGCCGGCGGAAGGACAGGTG
GTCGATATGGCAGGGATCGGGCCCGGGAAGGGTCTGAAGGCGAGGCGGCA
GAGCGTGACGATGCATCTGGGCGGGTCGAGTGTCCGGGAAGGTTATGAGT
TGACCACGGAGGTGGCAGTGCTGGAGGGAGGGAGGGAGGGAGGGAAGGAC
CGGTTTGACGGCTTTTTGGGCCAATCCTTCTTCGGCGCGTATGCGGTGGT
GGACTTCGATTGGAGGCATGCCATGCTTCGGTGTTATTCGGAGGAGAAAA
CAGAAGGGGAGAAGGCAACGACGCTGGATGGATTGCTCGATTTTTGGCCC
CCCTCCCCCCAGCCTACCTCCCCGCCGCCCTCCGCTTCCCCGCCGCCGAG
CCCTCCCCAAGCGGCCCGCTTGCACACGGGGGTGGCGCGCGACCGGCTCG
GTCCCAACGCGTTGATGAGCGTGACGGTGGTGGTGAACGGGCGGAAAGAC
GTTCCCTGCTGTGGCCTCATCGATACAGGGGTCTTCACAAGCGTCTTGAA
CTGGGCCGCAGCCCGTGCCTTGGGGGTGGGAAAAGAAGGGGAAATAGGAG
TCACGGTCCCGGCCAGGGAGTCGGGCATGGTCGTGGTGGGACTGGATGGT
GCTCCTACGGAAGTCACGCTCGCCCGCTTTGACGAGGTGGCGTTCGAGGG
CGAGGCCGAAGGCGGGAGGGAGGGAGGGGCGGTGGTAGTGCCTACGGAAA
ACGGGGGCGTGACGTTGGCGGTGGCTGATTTGCTGGGTTTGCAACAGTTG
GGACTTCTAGAGACGCCGGCGATGGTGGTGGGCTTGGACCTGCTGGAGGG
AGGGAGGGGAGGGAGGCTGATCCTGGATCTGGGGAGGGAAGGCTCTTCAT
GGCGTAGGAAGAGAGGGAGGGGCGAGGGGGAAGGGTTGAAATTTTGCCAT
TTAAAAGTACCAAAAAAAATGAATGGTCATGAAAGGGCAAGTGATGGATG
GACGGGCGGTGGACGAAGGGGGGGGAGGCACGCTCTCCCAGACAGGGGGT
GGCAAGAACGGAGGACTTCGAGCAATCTTTCCTCCCCTCTGTCATAAGAC
AACAGAGACGAAATCGAGAAATGCTGCCCTTCGAAAATGATAAGACAAGG
GAGAGGGAATCGAGGGACGTGTTTCCCCCAAAGTAACGCGACCCCTGGCA
AGCGCGCTATTCTGTCTACACATCAAGAAACATCCATCACTCGCT back to topprotein sequence of rna3350 >rna3350-protein ID=rna3350-protein|Name=rna3350|organism=Nannochloropsis gaditana|type=polypeptide|length=125bp
MALPPNQTLEKWKATHNATNRVPSTKQRRLQSLLNEVDPTGSFRLDGETE
EIVLYLIEHFMTSVATHAAQMARHRGSTAIEHSDVAFTLLKQWNMAVPAV
GPPPGGGSGSGGGGGGKKGIKRKSR back to topmRNA from alignment at CM002461.1:182810..183717+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna3350 ID=rna3350|Name=rna3350|organism=Nannochloropsis gaditana|type=mRNA|length=908bp|location=Sequence derived from alignment at CM002461.1:182810..183717+ (Nannochloropsis gaditana)
GAAATGGCGTCACAGCATGATGTTTCACGTCGTTGTCGCCTTCTCGAGCG
TAAGGGGGTAGGAGCCGctcgtcgtctttttcctggcTTCATTTTACGCG
TTCTCTGAATCCTGACTGTCTCTCTGAGGCTTGCGTTTTGGTTGGGCCGG
TCGTGACCCTGCGAGTATTGCGTCTTTGTcgtccatcctcttctcacGCA
GCTACTATTGCAACCACTATCTATCCAGGGGCTCGTTGGAAGCATTTCGG
GATAGCGACACGACCAGAAAGGAGAGGCTATATCCCGCTACACTAGGGCA
CTCCCGTCCTCGATAGAAGTCTTTCCTatggcccttcctccaaatCAAAC
GCTGGAGAAATGGAAAGCGACGCACAATGCCACAAATAGAGTTCCCAGTA
CGAAACAGCGCCGACTGCAATCTTTGCTGAATGAGGTCGACCCAACGGGC
TCGTTTCGGCTCGATGGGGAGACCGAAGAGATCGTTTTGTATTTGATAGA
ACATTTCATGACGTCGGTGGCCACGCACGCCGCGCAAATGGCGAGGCACC
GTGGTTCCACTGCAATTGAGCACAGTGACGTAGCTTTCACGCTTTTGAAA
CAATGGAATATGGCGGTGCCTGCCGTAGGGCCTCCGCCAGGCGGAGGTAG
CGgtagtggtggtggaggaggagggaaaaaagggatAAAGCGCAAGTCAA
GGTGACAGGAATCATGTGGAAAAGGTGTACAAAAGACACATGCACGACCA
CACTTGTGAGaattggaagaaaagaatgtCGATGTTCTCGGAGCCCGTGT
TAGGGTTAGTGTTAGGGTTAAAGATTTTTGGAGTGCAAGAGCGCAAAAAT
GCCATTCGCTTCCTTGCTTCGCACGCCCTGTACAAGGCTATGTGTCGTGA
TGCCAATG back to topCoding sequence (CDS) from alignment at CM002461.1:182810..183717+ >rna3350 ID=rna3350|Name=rna3350|organism=Nannochloropsis gaditana|type=CDS|length=378bp|location=Sequence derived from alignment at CM002461.1:182810..183717+ (Nannochloropsis gaditana)
atggcccttcctccaaatCAAACGCTGGAGAAATGGAAAGCGACGCACAA
TGCCACAAATAGAGTTCCCAGTACGAAACAGCGCCGACTGCAATCTTTGC
TGAATGAGGTCGACCCAACGGGCTCGTTTCGGCTCGATGGGGAGACCGAA
GAGATCGTTTTGTATTTGATAGAACATTTCATGACGTCGGTGGCCACGCA
CGCCGCGCAAATGGCGAGGCACCGTGGTTCCACTGCAATTGAGCACAGTG
ACGTAGCTTTCACGCTTTTGAAACAATGGAATATGGCGGTGCCTGCCGTA
GGGCCTCCGCCAGGCGGAGGTAGCGgtagtggtggtggaggaggagggaa
aaaagggatAAAGCGCAAGTCAAGGTGA back to top
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