EWM27332.1, cds3341 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27332.1 vs. NCBI_GenBank
Match: gi|585109535|gb|EWM27332.1| (transcription initiation factor tfiid subunit 12 [Nannochloropsis gaditana]) HSP 1 Score: 258.07 bits (658), Expect = 3.388e-87 Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0
Query: 1 MALPPNQTLEKWKATHNATNRVPSTKQRRLQSLLNEVDPTGSFRLDGETEEIVLYLIEHFMTSVATHAAQMARHRGSTAIEHSDVAFTLLKQWNMAVPAVGPPPGGGSGSGGGGGGKKGIKRKSR 125
MALPPNQTLEKWKATHNATNRVPSTKQRRLQSLLNEVDPTGSFRLDGETEEIVLYLIEHFMTSVATHAAQMARHRGSTAIEHSDVAFTLLKQWNMAVPAVGPPPGGGSGSGGGGGGKKGIKRKSR
Sbjct: 1 MALPPNQTLEKWKATHNATNRVPSTKQRRLQSLLNEVDPTGSFRLDGETEEIVLYLIEHFMTSVATHAAQMARHRGSTAIEHSDVAFTLLKQWNMAVPAVGPPPGGGSGSGGGGGGKKGIKRKSR 125
BLAST of EWM27332.1 vs. NCBI_GenBank
Match: gi|562873459|ref|XP_006164629.1| (PREDICTED: transcription initiation factor TFIID subunit 12 isoform X2 [Tupaia chinensis]) HSP 1 Score: 75.485 bits (184), Expect = 1.847e-14 Identity = 37/85 (43.53%), Postives = 54/85 (63.53%), Query Frame = 0
Query: 17 NATNRVPSTKQRRLQSLLNEVDPTGSFRLDGETEEIVLYLIEHFMTSVATHAAQMARHRGSTAIEHSDVAFTLLKQWNMAVPAVG 101
N+T V +++LQ L+ EVDP S +LD + EE++L + + F+ SV T A Q+ARHR S+ +E DV L +QWNM +P G
Sbjct: 85 NSTAVVKVLTKKKLQDLVREVDP--SEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLERQWNMWIPGFG 167
BLAST of EWM27332.1 vs. NCBI_GenBank
Match: gi|686705137|ref|XP_002811215.3| (PREDICTED: LOW QUALITY PROTEIN: transcription initiation factor TFIID subunit 12, partial [Pongo abelii]) HSP 1 Score: 72.7886 bits (177), Expect = 3.561e-14 Identity = 37/108 (34.26%), Postives = 59/108 (54.63%), Query Frame = 0
Query: 20 NRVPSTKQRRLQSLLNEVDPTGSFRLDGETEEIVLYLIEHFMTSVATHAAQMARHRGSTAIEHSDVAFTLLKQWNMAVPAVGPP---PGGGSGSGGGGGGKKGIKRKS 124
N + +++LQ L+ EVDP +LD + EE++L + + F+ SV T A Q+ARHR S+ +E DV L +QWNM +P G P + + + + RK+
Sbjct: 4 NXLXVLTKKKLQDLVREVDPNE--QLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLERQWNMWIPGFGSEEIRPYKKACTTEAHKQRMALIRKT 109
BLAST of EWM27332.1 vs. NCBI_GenBank
Match: gi|678210707|gb|KFV77686.1| (Transcription initiation factor TFIID subunit 12 [Struthio camelus australis]) HSP 1 Score: 74.3294 bits (181), Expect = 4.110e-14 Identity = 34/76 (44.74%), Postives = 49/76 (64.47%), Query Frame = 0
Query: 26 KQRRLQSLLNEVDPTGSFRLDGETEEIVLYLIEHFMTSVATHAAQMARHRGSTAIEHSDVAFTLLKQWNMAVPAVG 101
K+++LQ L+ EVDP +LD + EE++L + + F+ SV T A Q+ARHR S +E DV L +QWNM +P G
Sbjct: 71 KKKKLQDLVREVDPNE--QLDEDVEEMLLQIADDFIESVVTAACQLARHRKSNTLEVKDVQLHLERQWNMWIPGFG 144
BLAST of EWM27332.1 vs. NCBI_GenBank
Match: gi|507935088|ref|XP_004678750.1| (PREDICTED: transcription initiation factor TFIID subunit 12 [Condylura cristata] >gi|507935090|ref|XP_004678751.1| PREDICTED: transcription initiation factor TFIID subunit 12 [Condylura cristata]) HSP 1 Score: 73.559 bits (179), Expect = 4.939e-14 Identity = 34/75 (45.33%), Postives = 49/75 (65.33%), Query Frame = 0
Query: 27 QRRLQSLLNEVDPTGSFRLDGETEEIVLYLIEHFMTSVATHAAQMARHRGSTAIEHSDVAFTLLKQWNMAVPAVG 101
+++LQ L+ EVDP +LD + EE++L + + F+ SV T A Q+ARHR ST +E DV L +QWNM +P G
Sbjct: 60 KKKLQDLVREVDPNE--QLDEDVEEMLLQIADDFIESVVTAACQLARHRKSTTLEVKDVQLHLERQWNMWIPGFG 132
BLAST of EWM27332.1 vs. NCBI_GenBank
Match: gi|852726736|ref|XP_012891899.1| (PREDICTED: LOW QUALITY PROTEIN: transcription initiation factor TFIID subunit 12-like [Dipodomys ordii]) HSP 1 Score: 73.559 bits (179), Expect = 5.616e-14 Identity = 33/75 (44.00%), Postives = 49/75 (65.33%), Query Frame = 0
Query: 27 QRRLQSLLNEVDPTGSFRLDGETEEIVLYLIEHFMTSVATHAAQMARHRGSTAIEHSDVAFTLLKQWNMAVPAVG 101
+++LQ L+ EVDP +LD + EE++L + + F+ SV T A Q+ARHR S+ +E DV L +QWNM +P G
Sbjct: 60 KKKLQDLVREVDPNE--QLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLERQWNMXIPGFG 132
BLAST of EWM27332.1 vs. NCBI_GenBank
Match: gi|1005946032|ref|XP_015781308.1| (PREDICTED: transcription initiation factor TFIID subunit 12-like [Tetranychus urticae]) HSP 1 Score: 74.7146 bits (182), Expect = 5.691e-14 Identity = 32/78 (41.03%), Postives = 51/78 (65.38%), Query Frame = 0
Query: 27 QRRLQSLLNEVDPTGSFRLDGETEEIVLYLIEHFMTSVATHAAQMARHRGSTAIEHSDVAFTLLKQWNMAVPAVGPPP 104
++RLQ L+NE+DP +LD E E+++L + + F+ +V T+A ++A+HRGS +E DV L K WN+ +P G P
Sbjct: 105 KQRLQELVNEIDPRE--QLDEEVEDLLLNIADDFVDNVVTNACKLAKHRGSKTLEVKDVQLILEKDWNLFIPGFGSLP 180
BLAST of EWM27332.1 vs. NCBI_GenBank
Match: gi|562873463|ref|XP_006164631.1| (PREDICTED: transcription initiation factor TFIID subunit 12 isoform X4 [Tupaia chinensis] >gi|562873465|ref|XP_006164632.1| PREDICTED: transcription initiation factor TFIID subunit 12 isoform X4 [Tupaia chinensis] >gi|562873467|ref|XP_006164633.1| PREDICTED: transcription initiation factor TFIID subunit 12 isoform X4 [Tupaia chinensis]) HSP 1 Score: 73.1738 bits (178), Expect = 6.595e-14 Identity = 34/75 (45.33%), Postives = 50/75 (66.67%), Query Frame = 0
Query: 27 QRRLQSLLNEVDPTGSFRLDGETEEIVLYLIEHFMTSVATHAAQMARHRGSTAIEHSDVAFTLLKQWNMAVPAVG 101
+++LQ L+ EVDP S +LD + EE++L + + F+ SV T A Q+ARHR S+ +E DV L +QWNM +P G
Sbjct: 60 KKKLQDLVREVDP--SEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLERQWNMWIPGFG 132
BLAST of EWM27332.1 vs. NCBI_GenBank
Match: gi|444519073|gb|ELV12557.1| (Transcription initiation factor TFIID subunit 12 [Tupaia chinensis]) HSP 1 Score: 73.559 bits (179), Expect = 7.730e-14 Identity = 34/75 (45.33%), Postives = 50/75 (66.67%), Query Frame = 0
Query: 27 QRRLQSLLNEVDPTGSFRLDGETEEIVLYLIEHFMTSVATHAAQMARHRGSTAIEHSDVAFTLLKQWNMAVPAVG 101
+++LQ L+ EVDP S +LD + EE++L + + F+ SV T A Q+ARHR S+ +E DV L +QWNM +P G
Sbjct: 60 KKKLQDLVREVDP--SEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLERQWNMWIPGFG 132
BLAST of EWM27332.1 vs. NCBI_GenBank
Match: gi|562873461|ref|XP_006164630.1| (PREDICTED: transcription initiation factor TFIID subunit 12 isoform X3 [Tupaia chinensis]) HSP 1 Score: 73.559 bits (179), Expect = 1.049e-13 Identity = 34/75 (45.33%), Postives = 50/75 (66.67%), Query Frame = 0
Query: 27 QRRLQSLLNEVDPTGSFRLDGETEEIVLYLIEHFMTSVATHAAQMARHRGSTAIEHSDVAFTLLKQWNMAVPAVG 101
+++LQ L+ EVDP S +LD + EE++L + + F+ SV T A Q+ARHR S+ +E DV L +QWNM +P G
Sbjct: 92 KKKLQDLVREVDP--SEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLERQWNMWIPGFG 164 The following BLAST results are available for this feature:
BLAST of EWM27332.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|