EWM27332.1, cds3341 (CDS) Nannochloropsis gaditana

Overview
NameEWM27332.1
Unique Namecds3341
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:183137..183514 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27332.1
Producttranscription initiation factor tfiid subunit 12
Orig transcript idgnl|cribi|Naga_100892g1.33.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:183137..183514 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005654nucleoplasm
GO:0005669transcription factor TFIID complex
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0006352DNA-templated transcription, initiation
Vocabulary: Molecular Function
TermDefinition
GO:0008135translation factor activity, RNA binding
GO:0005515protein binding
GO:0046982protein heterodimerization activity
Vocabulary: INTERPRO
TermDefinition
IPR003228TFIID_sub
IPR009072Histone-fold
Homology
BLAST of EWM27332.1 vs. NCBI_GenBank
Match: gi|585109535|gb|EWM27332.1| (transcription initiation factor tfiid subunit 12 [Nannochloropsis gaditana])

HSP 1 Score: 258.07 bits (658), Expect = 3.388e-87
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0
Query:    1 MALPPNQTLEKWKATHNATNRVPSTKQRRLQSLLNEVDPTGSFRLDGETEEIVLYLIEHFMTSVATHAAQMARHRGSTAIEHSDVAFTLLKQWNMAVPAVGPPPGGGSGSGGGGGGKKGIKRKSR 125
            MALPPNQTLEKWKATHNATNRVPSTKQRRLQSLLNEVDPTGSFRLDGETEEIVLYLIEHFMTSVATHAAQMARHRGSTAIEHSDVAFTLLKQWNMAVPAVGPPPGGGSGSGGGGGGKKGIKRKSR
Sbjct:    1 MALPPNQTLEKWKATHNATNRVPSTKQRRLQSLLNEVDPTGSFRLDGETEEIVLYLIEHFMTSVATHAAQMARHRGSTAIEHSDVAFTLLKQWNMAVPAVGPPPGGGSGSGGGGGGKKGIKRKSR 125          
BLAST of EWM27332.1 vs. NCBI_GenBank
Match: gi|562873459|ref|XP_006164629.1| (PREDICTED: transcription initiation factor TFIID subunit 12 isoform X2 [Tupaia chinensis])

HSP 1 Score: 75.485 bits (184), Expect = 1.847e-14
Identity = 37/85 (43.53%), Postives = 54/85 (63.53%), Query Frame = 0
Query:   17 NATNRVPSTKQRRLQSLLNEVDPTGSFRLDGETEEIVLYLIEHFMTSVATHAAQMARHRGSTAIEHSDVAFTLLKQWNMAVPAVG 101
            N+T  V    +++LQ L+ EVDP  S +LD + EE++L + + F+ SV T A Q+ARHR S+ +E  DV   L +QWNM +P  G
Sbjct:   85 NSTAVVKVLTKKKLQDLVREVDP--SEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLERQWNMWIPGFG 167          
BLAST of EWM27332.1 vs. NCBI_GenBank
Match: gi|686705137|ref|XP_002811215.3| (PREDICTED: LOW QUALITY PROTEIN: transcription initiation factor TFIID subunit 12, partial [Pongo abelii])

HSP 1 Score: 72.7886 bits (177), Expect = 3.561e-14
Identity = 37/108 (34.26%), Postives = 59/108 (54.63%), Query Frame = 0
Query:   20 NRVPSTKQRRLQSLLNEVDPTGSFRLDGETEEIVLYLIEHFMTSVATHAAQMARHRGSTAIEHSDVAFTLLKQWNMAVPAVGPP---PGGGSGSGGGGGGKKGIKRKS 124
            N +    +++LQ L+ EVDP    +LD + EE++L + + F+ SV T A Q+ARHR S+ +E  DV   L +QWNM +P  G     P   + +      +  + RK+
Sbjct:    4 NXLXVLTKKKLQDLVREVDPNE--QLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLERQWNMWIPGFGSEEIRPYKKACTTEAHKQRMALIRKT 109          
BLAST of EWM27332.1 vs. NCBI_GenBank
Match: gi|678210707|gb|KFV77686.1| (Transcription initiation factor TFIID subunit 12 [Struthio camelus australis])

HSP 1 Score: 74.3294 bits (181), Expect = 4.110e-14
Identity = 34/76 (44.74%), Postives = 49/76 (64.47%), Query Frame = 0
Query:   26 KQRRLQSLLNEVDPTGSFRLDGETEEIVLYLIEHFMTSVATHAAQMARHRGSTAIEHSDVAFTLLKQWNMAVPAVG 101
            K+++LQ L+ EVDP    +LD + EE++L + + F+ SV T A Q+ARHR S  +E  DV   L +QWNM +P  G
Sbjct:   71 KKKKLQDLVREVDPNE--QLDEDVEEMLLQIADDFIESVVTAACQLARHRKSNTLEVKDVQLHLERQWNMWIPGFG 144          
BLAST of EWM27332.1 vs. NCBI_GenBank
Match: gi|507935088|ref|XP_004678750.1| (PREDICTED: transcription initiation factor TFIID subunit 12 [Condylura cristata] >gi|507935090|ref|XP_004678751.1| PREDICTED: transcription initiation factor TFIID subunit 12 [Condylura cristata])

HSP 1 Score: 73.559 bits (179), Expect = 4.939e-14
Identity = 34/75 (45.33%), Postives = 49/75 (65.33%), Query Frame = 0
Query:   27 QRRLQSLLNEVDPTGSFRLDGETEEIVLYLIEHFMTSVATHAAQMARHRGSTAIEHSDVAFTLLKQWNMAVPAVG 101
            +++LQ L+ EVDP    +LD + EE++L + + F+ SV T A Q+ARHR ST +E  DV   L +QWNM +P  G
Sbjct:   60 KKKLQDLVREVDPNE--QLDEDVEEMLLQIADDFIESVVTAACQLARHRKSTTLEVKDVQLHLERQWNMWIPGFG 132          
BLAST of EWM27332.1 vs. NCBI_GenBank
Match: gi|852726736|ref|XP_012891899.1| (PREDICTED: LOW QUALITY PROTEIN: transcription initiation factor TFIID subunit 12-like [Dipodomys ordii])

HSP 1 Score: 73.559 bits (179), Expect = 5.616e-14
Identity = 33/75 (44.00%), Postives = 49/75 (65.33%), Query Frame = 0
Query:   27 QRRLQSLLNEVDPTGSFRLDGETEEIVLYLIEHFMTSVATHAAQMARHRGSTAIEHSDVAFTLLKQWNMAVPAVG 101
            +++LQ L+ EVDP    +LD + EE++L + + F+ SV T A Q+ARHR S+ +E  DV   L +QWNM +P  G
Sbjct:   60 KKKLQDLVREVDPNE--QLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLERQWNMXIPGFG 132          
BLAST of EWM27332.1 vs. NCBI_GenBank
Match: gi|1005946032|ref|XP_015781308.1| (PREDICTED: transcription initiation factor TFIID subunit 12-like [Tetranychus urticae])

HSP 1 Score: 74.7146 bits (182), Expect = 5.691e-14
Identity = 32/78 (41.03%), Postives = 51/78 (65.38%), Query Frame = 0
Query:   27 QRRLQSLLNEVDPTGSFRLDGETEEIVLYLIEHFMTSVATHAAQMARHRGSTAIEHSDVAFTLLKQWNMAVPAVGPPP 104
            ++RLQ L+NE+DP    +LD E E+++L + + F+ +V T+A ++A+HRGS  +E  DV   L K WN+ +P  G  P
Sbjct:  105 KQRLQELVNEIDPRE--QLDEEVEDLLLNIADDFVDNVVTNACKLAKHRGSKTLEVKDVQLILEKDWNLFIPGFGSLP 180          
BLAST of EWM27332.1 vs. NCBI_GenBank
Match: gi|562873463|ref|XP_006164631.1| (PREDICTED: transcription initiation factor TFIID subunit 12 isoform X4 [Tupaia chinensis] >gi|562873465|ref|XP_006164632.1| PREDICTED: transcription initiation factor TFIID subunit 12 isoform X4 [Tupaia chinensis] >gi|562873467|ref|XP_006164633.1| PREDICTED: transcription initiation factor TFIID subunit 12 isoform X4 [Tupaia chinensis])

HSP 1 Score: 73.1738 bits (178), Expect = 6.595e-14
Identity = 34/75 (45.33%), Postives = 50/75 (66.67%), Query Frame = 0
Query:   27 QRRLQSLLNEVDPTGSFRLDGETEEIVLYLIEHFMTSVATHAAQMARHRGSTAIEHSDVAFTLLKQWNMAVPAVG 101
            +++LQ L+ EVDP  S +LD + EE++L + + F+ SV T A Q+ARHR S+ +E  DV   L +QWNM +P  G
Sbjct:   60 KKKLQDLVREVDP--SEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLERQWNMWIPGFG 132          
BLAST of EWM27332.1 vs. NCBI_GenBank
Match: gi|444519073|gb|ELV12557.1| (Transcription initiation factor TFIID subunit 12 [Tupaia chinensis])

HSP 1 Score: 73.559 bits (179), Expect = 7.730e-14
Identity = 34/75 (45.33%), Postives = 50/75 (66.67%), Query Frame = 0
Query:   27 QRRLQSLLNEVDPTGSFRLDGETEEIVLYLIEHFMTSVATHAAQMARHRGSTAIEHSDVAFTLLKQWNMAVPAVG 101
            +++LQ L+ EVDP  S +LD + EE++L + + F+ SV T A Q+ARHR S+ +E  DV   L +QWNM +P  G
Sbjct:   60 KKKLQDLVREVDP--SEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLERQWNMWIPGFG 132          
BLAST of EWM27332.1 vs. NCBI_GenBank
Match: gi|562873461|ref|XP_006164630.1| (PREDICTED: transcription initiation factor TFIID subunit 12 isoform X3 [Tupaia chinensis])

HSP 1 Score: 73.559 bits (179), Expect = 1.049e-13
Identity = 34/75 (45.33%), Postives = 50/75 (66.67%), Query Frame = 0
Query:   27 QRRLQSLLNEVDPTGSFRLDGETEEIVLYLIEHFMTSVATHAAQMARHRGSTAIEHSDVAFTLLKQWNMAVPAVG 101
            +++LQ L+ EVDP  S +LD + EE++L + + F+ SV T A Q+ARHR S+ +E  DV   L +QWNM +P  G
Sbjct:   92 KKKLQDLVREVDP--SEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLERQWNMWIPGFG 164          
The following BLAST results are available for this feature:
BLAST of EWM27332.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109535|gb|EWM27332.1|3.388e-87100.00transcription initiation factor tfiid subunit 12 [... [more]
gi|562873459|ref|XP_006164629.1|1.847e-1443.53PREDICTED: transcription initiation factor TFIID s... [more]
gi|686705137|ref|XP_002811215.3|3.561e-1434.26PREDICTED: LOW QUALITY PROTEIN: transcription init... [more]
gi|678210707|gb|KFV77686.1|4.110e-1444.74Transcription initiation factor TFIID subunit 12 [... [more]
gi|507935088|ref|XP_004678750.1|4.939e-1445.33PREDICTED: transcription initiation factor TFIID s... [more]
gi|852726736|ref|XP_012891899.1|5.616e-1444.00PREDICTED: LOW QUALITY PROTEIN: transcription init... [more]
gi|1005946032|ref|XP_015781308.1|5.691e-1441.03PREDICTED: transcription initiation factor TFIID s... [more]
gi|562873463|ref|XP_006164631.1|6.595e-1445.33PREDICTED: transcription initiation factor TFIID s... [more]
gi|444519073|gb|ELV12557.1|7.730e-1445.33Transcription initiation factor TFIID subunit 12 [... [more]
gi|562873461|ref|XP_006164630.1|1.049e-1345.33PREDICTED: transcription initiation factor TFIID s... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3350rna3350Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications