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Properties
Property Name | Value |
Product | hypothetical protein |
Orig transcript id | gnl|cribi|Naga_100226g15.10114.mrna |
Orig protein id | gnl|cribi|Naga_100226g15.10114 |
Gbkey | mRNA |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
CM002461.1 | supercontig | CM002461.1:171491..174560 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna3346 ID=rna3346|Name=rna3346|organism=Nannochloropsis gaditana|type=mRNA|length=3205bp GCTCGCACACCTCCTTCCACGTCCTTACAAGCTTATCTGCGTTTACTTGC CAATTTGTGTTATGAATATGTTTCGCAGGTGGATCGATCCCAGTATTCCA CCTCCTTACCATTTTCTTTATTTCAATTTTTCTATAGAAGTACTTTATGC AACCACAAAAATACCACGTCGTTCCCTCCTACGGTTCAATTTCAAGTTTT ACGACTCATTGCTCTACACATTGTTTTCTTCGTGGCTCACACAGGAAGCC TCGTGACTTCTGTGTACTCTCATATTGTACAATCTGAGCTGCCCTTTGGT CACAAGGGAGGAGAGGAACCATGAGGTACTGCCACTTTCCATTGGAATCA GTGCCTGTCATGGCTAGTGCTTTGGCACTCTTGCTCGCTACAATGCCACC GACAGCACAAGCCGAAATACAAGGCTGCATACAAGCGCTGGCGAGACTAA ACACTGCTCCGTACAACGCGTCTTTACCCTTTCTAAATGGCGTTTCGGGT CACGTCAATGTAGCATATCTCTACCAAAAACCAATGTTTGCTGTCATGCC AAATGAAGCCATGGGTAATTTCGACCTTTGCCGACATTCTGAGCTCTACA CTTCCGGCTTGGTGAAAACCCACTACTGCGCTCTGTCTCACGATAAGGCA GGTATCTGCGTCCCCACCGAGTGTCGAGCGGAAGATTTGCATAACAAAGC AATTCTGCAACCGGTGATGAATCTGGGTATACATGCGAGTACTGTCATCC CCGAAGAATGCGCCATGAACTTACACCTGACGCAAGGGTGTGCTTATTCT CGACAAGCATTAGAGTATTTCCACAGTCTCTACAATTTGCTTGTGCTTCT TGGTAACGATACTCCGCAATCCACTGGCTCCGTCACTTGCACCACCCGCG CCCACACAGCGGAAGCATCGGCATACACAATGCTTGGTTTCACTCTTCTT TTCGCGACATTGGCCCTTCTCGGCGCGGCCTGGCAATATTTTCATGCCGT CGCCCACCATGGAGACAAGCGGGCACTAATCTCCTCCTCTTCGGCTGTGC CTTCCTCCAAACCGTCCTCGTCAACTAAATCCGATATAAAGCCATCTGAC GCCTCATCATTGCCATCTCCCGGGTCTAAAGTCGTGGCGTTGACAGTCAA GGCAAGCCCGGGCCGCGAAGCATCTGACTTACAAGATATCCCCTTAGAGG AAGTGAACGAGCAGCCGGAGGGTACGCCGCGGTCGCGAAAGAATAACAAC AAGAAGAAAGGCGTACTAAAGAGCAACAGCAGCAATAGCAACAAACCCGC TGTCCTTGATTCTGCCGCTGCTACCACAGCTATGGTTGCGACTTCGACAA AACAACCAGATATGGTGGAATTGATGGCACAGGTATTGAAGGTGCCTCCT TGCCCTAAGCCTATTTCTGCATTTTCTTTCGTGGACAATTTGAATGAAAT TTTCACTTTAAAGGCTCGAGGAGGGGAGTTTGCGATTTTCGACGGCATGA AAGCCATTTCCGCGGCTTGGGTGGTTTTCTACCACGTGTTGCTGTGGCAA ATTTATTTGGTGCAAAACCCAGAATATTTGGTGCCTCCAAAGGGGCTTTT GTCAAAGCTCTGGGCCGCGCCCTTTTTCAACTACTCGGGAACTTTAAGCG TCGACACATTCTTCTTCATCTCGGGCTTCCTGGCGTCATACATGCTATTG GTAAAGCTCGACAAGGAGCACGCTAAAGGGCTGAGCAAACCTGCCTACAA ATGGATTCCCTCCCTGTACCTTCATCGATGGTTGCGGATTACACCGGCCT ACATGTTTGCTTTCTTTCTTCACTGGAAGATCGCACCGCTTCTGGCTTAC GGTCCTCTGGCCGCGACCGTGTGGGAAAACAATATCCGCCCTTGCAGGGG AGTCTGGTGGTCGCATTTTCTGTACCTGAACGACATTTACCCCTGGTGGA ACCAGCGACTCGGAGAGGTTTGCTACGGGCACTCCTGGTACTTAGCCAAT GACATGCAATACTACCTCCTCGTTCCTTTCTTTTGCCTCTTATACCGTTC CCCCCGAATTAATGGGAAAAAACTGGCCACGTACGCGGTATGGGCATGCT TGCTCACCTGCATCATTGTCTCGTGGACGCTCACTATCAAGGACAATTGG AGCCCCAACTCCTGGGACGGCGTGGACGGAGATCACTACCGGGAGGAAGG CTTTTCCCGCCCATGGACACGGTGCTCGTCCTACATGATTGGGGTCCTTT TTTCCTACATGTGGTACGAGAAGAAGCAGGGGAATCCGGACGGAAAATTC CACACGTTCCAGGCCAACTTTTTGTGGGTGAGCGGCCTCGTGCTCCTTGC CGTATCCATGTACGGACCTCATAGCGGTTCGGCTGGCGTCATTCCCTGTG CCATTGCCGCCCCGGGCACCCCATGTGGGAGCAATTGGAGCCCGTCGACC AGGGCAGCGATTATCGCATTGCTACGTCCGACTTGGACTCTGGGGTTGGG TTGTTTGTCGGTGTTATGCTGGAACAACCAAGGAGGTTTTATTCAGAAAT TTTTGGCGGCTCCACTCTGGTTCCCCTTGAGTACCCTCAGCTTCTGTATC TACCTGGTCCATTATACGGTGCTCACATATTACATCAGCCAGCGGACCAT GCGAATCCGTTTCGAGTTGTTTGGCTTTTTGAACGCATACTTTGGTTTGA TGGCAATCTCGTGTGGCCTGGCCCTTTTTGTTGTCCTGTTGGTGGAGAAG CCCTTCATGAAGCTGCAGAAGTATTTCTTGGAGAAGCCGGCGCCTGCCCG TAACAATAACGGGGGTGGACCTGCCACATCAGGACAGAAGGAAAAAGAAT GGACTCCGGCACACGATGCATCTCTTGACTCTCTCAAAGAGGCTGTTACA CCTACTGGAACAGTTTTACATTGTACTTGTGATGATCATTAATCAAAATA TTGCCCTACATCTCAGTGTTATACCACGAAGTTGACACATTTCAGGCGAG AGTCTTGACGTACCATAAAGAATCAGGTCAGCCGCCGGACCTCATTAAAA AAAGAAATTAAGGACGGAAAAATACAATAGAAGCGCCTCACATCGTTGTG GAAGATACGATGTTTCTGATGAAACATTACGTTTCGTATCCGCCGCTTTT GTCCAAGAACAGATCATGCGAAATGAAAATGAGGTGTGTGCCAAGGTCTT CTGCC back to topprotein sequence of rna3346 >rna3346-protein ID=rna3346-protein|Name=rna3346|organism=Nannochloropsis gaditana|type=polypeptide|length=596bp MSREPSSALGTSAGRGSPSAAGIDAQPESPPRTTTRLPESLALKSLPSLS RTPSASGTLEALALLSSPRSSPGGPRSRSPLPPRPTSSPRNASGSPSLPL PTFMSPTASSTNRSSLTGLPDQLVIHGPSSLSSPSSRVLNASPIVGELHK IKEEENEDHSESGRSRNSSAASTSLASGRSRDPSIVMASGQEIQSQNSSP SVLAVPTSSGSASSTHLGAATTSHTSPKAKANGDVFDRLFAGRPSRPSTP AERETLTAEHTFQPNLAKVEKDRHKGMERREDGLVFERLYKQGVGQAECR LKAAEIKAKQESASCSFAPRLVTEEHKRLRGSPSPPAPEHAADSPPVHER LYKGLEKRLDYFEKAEKRKSEKETHGCTFIPAILKTPVAMKAAAAGLRAE TGEAGEAKEGVGRQEETEEKAGEGKKESASKKVWERLYHARVPLEAKKAR QRQEYEDQVLPFRPELVTKTNVREERSRAGEQAGSKPGYTDAHGRLYEES IARRQRALHREVQMPEGCTFQPNIQVLTLKEQSSVSMTRAGSPNDALRMD AMYRRGTEKGKQQLEHEIASRPPPPKSDEEECTFFPQTNVKAKRAR back to topmRNA from alignment at CM002461.1:171491..174560+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna3346 ID=rna3346|Name=rna3346|organism=Nannochloropsis gaditana|type=mRNA|length=3070bp|location=Sequence derived from alignment at CM002461.1:171491..174560+ (Nannochloropsis gaditana) ATACAAATCAATGATAATTACATGATATCATATCGGGAAGGATAGTTGTT
AACCTGCCTTTTTGAAGCCCGAAAACGGGAATCTCTTGAAGGAATGCCCG
CGGCGATTACTAGACTCCCATCCCTCGCGGATGTTTCGGGATACCTTTCT
GCTTTTGTTGCGCTTGACTTGAAGGTGTGCAATTTATATCTAAACTTTAT
TAGCGCGCATTTTATGTAAGTTGTTCCTGCACGCATACTGAGACACGAAA
AGCAGTCTACTGTCTTGACCTCCTGTCTCCTTGTCGGCTTCCTTTCCTAT
CCGGGGCACGCGCTCTCATACCCGCATTCATGCTCTCCCGACCAATGTCC
TACATGTAGGTCTACTCACAGCTTTAAGGCTCTGTATCAAGAATATACAT
GAGCCGTGAACCGTCCAGTGCATTGGGAACTTCGGCGGGGAGAGGTTCCC
CGTCCGCTGCCGGCATTGACGCTCAGCCTGAGTCTCCTCCAAGGACGACA
ACGAGGCTTCCGGAGTCTTTGGCACTGAAATCACTTCCCAGTCTTAGTCG
GACGCCGTCGGCATCTGGCACCCTGGAAGCCTTGGCCTTGTTGTCGTCAC
CCCGTTCCTCGCCTGGCGGCCCCcgctctcgctctcccttgcctcctcgc
cctaCGTCGTCGCCTCGTAATGCATCCGGcagtccctccctgccactcCC
GACGTTCATGTCCCCgaccgcctcgtccacgaacCGCTCCTCTCTGACCG
GTCTGCCTGATCAGCTTGTCATTCatggcccctcttccttgtcttcaCCC
TCATCCCGTGTCCTGAATGCCTCCCCGATTGTGGGTGAGCTGCACAAGat
caaggaagaagagaacgAAGATCACAGTGAAAGCGGACGATCCCGAAACT
CGAGTGCAGCTTCAACCAGCCTAGCGAGTGGGCGTTCGCGTGATCCGAGC
ATCGTCATGGCGAGCGGGCAGGAAATCCAATCGCAAAACTCATCCCCTTC
AGTGCTTGCCGTGCCCACCTCGTCGGGATCTGCTTCCTCTACCCATCTGG
GGGCAGCCACGACCTCTCACACGTCCCCAAAAGCGAAGGCCAATGGCGAC
GTCTTTGACCGCCTCTTTGCTGggcgtccctcccgcccttccacgccagc
ggagagggagacgttGACCGCCGAGCACACCTTCCAACCCAATCTGGCCA
AGGTGGAAAAAGACAGGCACAAgggaatggagaggagggaggacggcctT
GTCTTCGAACGGCTGTACAAGCAGGGCGTGGGCCAGGCAGAATGTCGTCT
GAAAGCGTAAGTATCCCGTGACTTTTGCGCGGTGTGAAGGCGAAAGAAGA
AGCGCTGTGGAATGAATAGGATGACGTCTCGCGCTCAGCTCTTACACGAC
GTGCCCTGACCACGCTCCAAATTTCCATCCTCATGACCCAACTTAGGGCG
GAAATCAAAGCTAAGCAGGAAAGTGCAAGCTGTTCTTTTGCTCCAAGACT
GGTGACCGAGGAACACAAGCGATTGCGaggctcgccctcccctcccgccc
ctgaGCATGCCGCCgactccccccccgtgcaTGAACGGCTTTACAAGGGC
CTGGAAAAGCGTTTGGACTACTTTgaaaaggcggagaaaaggaaatcAGA
GAAGGAAACTCACGGTTGCACCTTCATTCCTGCGATCTTGAAGACCCCCG
TGGCTATGaaagcagcggcagcgggcTTGAGGGCCGAAACTGGAGAGGCc
ggagaggcgaaggagggagtggggagacaggaagagacagaggagaaggc
tggggagggaaagaaagaaagcgcTTCGAAAAAGGTCTGGGAGCGCTTGT
ATCACGCGCGGGTGCCGTTGGAGGCGAAGAAAGCCCGCCAACGTCAGGAA
TACGAGGATCAAGTCTTACCATTTCGGCCTGAGCTGGTTACCAAGACAAA
CgtgagagaagagagaagcaGGGCCGGGGAACAAGCGGGCAGCAAGCCTG
GCTACACAGATGCCCATGGACGTCTGTACGAAGAGTCTATCGCTCGCAGA
CAGCGGGCTTTGCACCGGGAAGTCCAAATGCCTGAAGGGTGCACTTTCCA
ACCCAACATACAAGTGCTCACTTTGAAAGAGCAGAGCTCAGTATCGATGA
CACGGGCAGGGTCACCGAATGACGCATTACGGATGGACGCCATGTACCGA
CGTGGaacggagaaaggaaagcaacagCTCGAACATGAAAttgcctcccg
cccaccgccgccgaaatcggacgaggaggaatgcACTTTTTTCCCCCAAA
CAAATGTGAAGGCGAAGCGTGCCAGATGAGACCCAGAGGGATCTTGAACG
GTTCAAGATATTGGGCGCGGTGTCGTGCTTGACGCCGACTTGATTTGTTT
TGATAAGAAAAAGGAAACGCTCGATTAATTATCATTGACCGCTCGCGTCG
GGAGCAGAGACGTCGATCAAACAAGTGAAAAGGACAGTGACATGAAAGAG
TGAATGAGAAAGCCAAGTCAGGACGGAGAGACAGCAGCTTTAAGTGGGCG
GAAAGCACTTTGTCGGACtcgagggggggatggaaggctctgaatgggag
gaaagggaagaagatgggGGCACAACTATCAGGATTGAGTTGGCTTACGA
GGTCACTACAAGAGAATGAACATTCCTGACAACAtacggaagaaggagag
aaagatgAATTAAGATGTGATGTTACTGTGCAGAGAGTaatttcctccca
tcccatcGAAGTCAAGCGTAGGATGTACCAAaatagaggaaaaggacacC
GTACACACCTCCCGATATTTACAcatggccgaggaggccatCTATCCTGA
GAGCATGATGTGGGAGTGTATATATTAAATATCTACAATGTAATCCGGCG
TCGTGGTCGACTTGAATGAATTATacgaaaggaagaaaaaaaagagccTT
GGAAGCAGCTAGGGGAACCAGAGAAACGAACGGGCCCGTTGAGGCGTTTC
TAGCGTCCCTGCCGAGCCATCGAAAAGCCCCCTTGCAACACCAACACTAA
CAAATTGACCCCACATGTCT back to topCoding sequence (CDS) from alignment at CM002461.1:171491..174560+ >rna3346 ID=rna3346|Name=rna3346|organism=Nannochloropsis gaditana|type=CDS|length=3582bp|location=Sequence derived from alignment at CM002461.1:171491..174560+ (Nannochloropsis gaditana) ATGAGCCGTGAACCGTCCAGTGCATTGGGAACTTCGGCGGGGAGAGGTTC CCCGTCCGCTGCCGGCATTGACGCTCAGCCTGAGTCTCCTCCAAGGACGA CAACGAGGCTTCCGGAGTCTTTGGCACTGAAATCACTTCCCAGTCTTAGT CGGACGCCGTCGGCATCTGGCACCCTGGAAGCCTTGGCCTTGTTGTCGTC ACCCCGTTCCTCGCCTGGCGGCCCCcgctctcgctctcccttgcctcctc gccctaCGTCGTCGCCTCGTAATGCATCCGGcagtccctccctgccactc CCGACGTTCATGTCCCCgaccgcctcgtccacgaacCGCTCCTCTCTGAC CGGTCTGCCTGATCAGCTTGTCATTCatggcccctcttccttgtcttcaC CCTCATCCCGTGTCCTGAATGCCTCCCCGATTGTGGGTGAGCTGCACAAG atcaaggaagaagagaacgAAGATCACAGTGAAAGCGGACGATCCCGAAA CTCGAGTGCAGCTTCAACCAGCCTAGCGAGTGGGCGTTCGCGTGATCCGA GCATCGTCATGGCGAGCGGGCAGGAAATCCAATCGCAAAACTCATCCCCT TCAGTGCTTGCCGTGCCCACCTCGTCGGGATCTGCTTCCTCTACCCATCT GGGGGCAGCCACGACCTCTCACACGTCCCCAAAAGCGAAGGCCAATGGCG ACGTCTTTGACCGCCTCTTTGCTGggcgtccctcccgcccttccacgcca gcggagagggagacgttGACCGCCGAGCACACCTTCCAACCCAATCTGGC CAAGGTGGAAAAAGACAGGCACAAgggaatggagaggagggaggacggcc tTGTCTTCGAACGGCTGTACAAGCAGGGCGTGGGCCAGGCAGAATGTCGT CTGAAAGCGGCGGAAATCAAAGCTAAGCAGGAAAGTGCAAGCTGTTCTTT TGCTCCAAGACTGGTGACCGAGGAACACAAGCGATTGCGaggctcgccct cccctcccgcccctgaGCATGCCGCCgactccccccccgtgcaTGAACGG CTTTACAAGGGCCTGGAAAAGCGTTTGGACTACTTTgaaaaggcggagaa aaggaaatcAGAGAAGGAAACTCACGGTTGCACCTTCATTCCTGCGATCT TGAAGACCCCCGTGGCTATGaaagcagcggcagcgggcTTGAGGGCCGAA ACTGGAGAGGCcggagaggcgaaggagggagtggggagacaggaagagac agaggagaaggctggggagggaaagaaagaaagcgcTTCGAAAAAGGTCT GGGAGCGCTTGTATCACGCGCGGGTGCCGTTGGAGGCGAAGAAAGCCCGC CAACGTCAGGAATACGAGGATCAAGTCTTACCATTTCGGCCTGAGCTGGT TACCAAGACAAACgtgagagaagagagaagcaGGGCCGGGGAACAAGCGG GCAGCAAGCCTGGCTACACAGATGCCCATGGACGTCTGTACGAAGAGTCT ATCGCTCGCAGACAGCGGGCTTTGCACCGGGAAGTCCAAATGCCTGAAGG GTGCACTTTCCAACCCAACATACAAGTGCTCACTTTGAAAGAGCAGAGCT CAGTATCGATGACACGGGCAGGGTCACCGAATGACGCATTACGGATGGAC GCCATGTACCGACGTGGaacggagaaaggaaagcaacagCTCGAACATGA AAttgcctcccgcccaccgccgccgaaatcggacgaggaggaatgcACTT TTTTCCCCCAAACAAATGTGAAGGCGAAGCGTGCCAGATGAATGAGCCGT GAACCGTCCAGTGCATTGGGAACTTCGGCGGGGAGAGGTTCCCCGTCCGC TGCCGGCATTGACGCTCAGCCTGAGTCTCCTCCAAGGACGACAACGAGGC TTCCGGAGTCTTTGGCACTGAAATCACTTCCCAGTCTTAGTCGGACGCCG TCGGCATCTGGCACCCTGGAAGCCTTGGCCTTGTTGTCGTCACCCCGTTC CTCGCCTGGCGGCCCCcgctctcgctctcccttgcctcctcgccctaCGT CGTCGCCTCGTAATGCATCCGGcagtccctccctgccactcCCGACGTTC ATGTCCCCgaccgcctcgtccacgaacCGCTCCTCTCTGACCGGTCTGCC TGATCAGCTTGTCATTCatggcccctcttccttgtcttcaCCCTCATCCC GTGTCCTGAATGCCTCCCCGATTGTGGGTGAGCTGCACAAGatcaaggaa gaagagaacgAAGATCACAGTGAAAGCGGACGATCCCGAAACTCGAGTGC AGCTTCAACCAGCCTAGCGAGTGGGCGTTCGCGTGATCCGAGCATCGTCA TGGCGAGCGGGCAGGAAATCCAATCGCAAAACTCATCCCCTTCAGTGCTT GCCGTGCCCACCTCGTCGGGATCTGCTTCCTCTACCCATCTGGGGGCAGC CACGACCTCTCACACGTCCCCAAAAGCGAAGGCCAATGGCGACGTCTTTG ACCGCCTCTTTGCTGggcgtccctcccgcccttccacgccagcggagagg gagacgttGACCGCCGAGCACACCTTCCAACCCAATCTGGCCAAGGTGGA AAAAGACAGGCACAAgggaatggagaggagggaggacggcctTGTCTTCG AACGGCTGTACAAGCAGGGCGTGGGCCAGGCAGAATGTCGTCTGAAAGCG GCGGAAATCAAAGCTAAGCAGGAAAGTGCAAGCTGTTCTTTTGCTCCAAG ACTGGTGACCGAGGAACACAAGCGATTGCGaggctcgccctcccctcccg cccctgaGCATGCCGCCgactccccccccgtgcaTGAACGGCTTTACAAG GGCCTGGAAAAGCGTTTGGACTACTTTgaaaaggcggagaaaaggaaatc AGAGAAGGAAACTCACGGTTGCACCTTCATTCCTGCGATCTTGAAGACCC CCGTGGCTATGaaagcagcggcagcgggcTTGAGGGCCGAAACTGGAGAG GCcggagaggcgaaggagggagtggggagacaggaagagacagaggagaa ggctggggagggaaagaaagaaagcgcTTCGAAAAAGGTCTGGGAGCGCT TGTATCACGCGCGGGTGCCGTTGGAGGCGAAGAAAGCCCGCCAACGTCAG GAATACGAGGATCAAGTCTTACCATTTCGGCCTGAGCTGGTTACCAAGAC AAACgtgagagaagagagaagcaGGGCCGGGGAACAAGCGGGCAGCAAGC CTGGCTACACAGATGCCCATGGACGTCTGTACGAAGAGTCTATCGCTCGC AGACAGCGGGCTTTGCACCGGGAAGTCCAAATGCCTGAAGGGTGCACTTT CCAACCCAACATACAAGTGCTCACTTTGAAAGAGCAGAGCTCAGTATCGA TGACACGGGCAGGGTCACCGAATGACGCATTACGGATGGACGCCATGTAC CGACGTGGaacggagaaaggaaagcaacagCTCGAACATGAAAttgcctc ccgcccaccgccgccgaaatcggacgaggaggaatgcACTTTTTTCCCCC AAACAAATGTGAAGGCGAAGCGTGCCAGATGA back to top
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