EWM27344.1, cds3337 (CDS) Nannochloropsis gaditana

Overview
NameEWM27344.1
Unique Namecds3337
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:171889..172796 +
Alignment locationCM002461.1:172937..173819 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27344.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100226g15.10114.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:171889..172796 +
CM002461.1supercontigCM002461.1:172937..173819 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM27344.1 vs. NCBI_GenBank
Match: gi|553189743|ref|XP_005855063.1| (hypothetical protein NGA_0353800 [Nannochloropsis gaditana CCMP526] >gi|422293999|gb|EKU21299.1| hypothetical protein NGA_0353800 [Nannochloropsis gaditana CCMP526] >gi|585109549|gb|EWM27344.1| hypothetical protein Naga_100226g15 [Nannochloropsis gaditana])

HSP 1 Score: 1194.87 bits (3090), Expect = 0.000e+0
Identity = 596/596 (100.00%), Postives = 596/596 (100.00%), Query Frame = 0 
Query:    1 MSREPSSALGTSAGRGSPSAAGIDAQPESPPRTTTRLPESLALKSLPSLSRTPSASGTLEALALLSSPRSSPGGPRSRSPLPPRPTSSPRNASGSPSLPLPTFMSPTASSTNRSSLTGLPDQLVIHGPSSLSSPSSRVLNASPIVGELHKIKEEENEDHSESGRSRNSSAASTSLASGRSRDPSIVMASGQEIQSQNSSPSVLAVPTSSGSASSTHLGAATTSHTSPKAKANGDVFDRLFAGRPSRPSTPAERETLTAEHTFQPNLAKVEKDRHKGMERREDGLVFERLYKQGVGQAECRLKAAEIKAKQESASCSFAPRLVTEEHKRLRGSPSPPAPEHAADSPPVHERLYKGLEKRLDYFEKAEKRKSEKETHGCTFIPAILKTPVAMKAAAAGLRAETGEAGEAKEGVGRQEETEEKAGEGKKESASKKVWERLYHARVPLEAKKARQRQEYEDQVLPFRPELVTKTNVREERSRAGEQAGSKPGYTDAHGRLYEESIARRQRALHREVQMPEGCTFQPNIQVLTLKEQSSVSMTRAGSPNDALRMDAMYRRGTEKGKQQLEHEIASRPPPPKSDEEECTFFPQTNVKAKRAR 596
            MSREPSSALGTSAGRGSPSAAGIDAQPESPPRTTTRLPESLALKSLPSLSRTPSASGTLEALALLSSPRSSPGGPRSRSPLPPRPTSSPRNASGSPSLPLPTFMSPTASSTNRSSLTGLPDQLVIHGPSSLSSPSSRVLNASPIVGELHKIKEEENEDHSESGRSRNSSAASTSLASGRSRDPSIVMASGQEIQSQNSSPSVLAVPTSSGSASSTHLGAATTSHTSPKAKANGDVFDRLFAGRPSRPSTPAERETLTAEHTFQPNLAKVEKDRHKGMERREDGLVFERLYKQGVGQAECRLKAAEIKAKQESASCSFAPRLVTEEHKRLRGSPSPPAPEHAADSPPVHERLYKGLEKRLDYFEKAEKRKSEKETHGCTFIPAILKTPVAMKAAAAGLRAETGEAGEAKEGVGRQEETEEKAGEGKKESASKKVWERLYHARVPLEAKKARQRQEYEDQVLPFRPELVTKTNVREERSRAGEQAGSKPGYTDAHGRLYEESIARRQRALHREVQMPEGCTFQPNIQVLTLKEQSSVSMTRAGSPNDALRMDAMYRRGTEKGKQQLEHEIASRPPPPKSDEEECTFFPQTNVKAKRAR
Sbjct:    1 MSREPSSALGTSAGRGSPSAAGIDAQPESPPRTTTRLPESLALKSLPSLSRTPSASGTLEALALLSSPRSSPGGPRSRSPLPPRPTSSPRNASGSPSLPLPTFMSPTASSTNRSSLTGLPDQLVIHGPSSLSSPSSRVLNASPIVGELHKIKEEENEDHSESGRSRNSSAASTSLASGRSRDPSIVMASGQEIQSQNSSPSVLAVPTSSGSASSTHLGAATTSHTSPKAKANGDVFDRLFAGRPSRPSTPAERETLTAEHTFQPNLAKVEKDRHKGMERREDGLVFERLYKQGVGQAECRLKAAEIKAKQESASCSFAPRLVTEEHKRLRGSPSPPAPEHAADSPPVHERLYKGLEKRLDYFEKAEKRKSEKETHGCTFIPAILKTPVAMKAAAAGLRAETGEAGEAKEGVGRQEETEEKAGEGKKESASKKVWERLYHARVPLEAKKARQRQEYEDQVLPFRPELVTKTNVREERSRAGEQAGSKPGYTDAHGRLYEESIARRQRALHREVQMPEGCTFQPNIQVLTLKEQSSVSMTRAGSPNDALRMDAMYRRGTEKGKQQLEHEIASRPPPPKSDEEECTFFPQTNVKAKRAR 596
The following BLAST results are available for this feature:
BLAST of EWM27344.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|553189743|ref|XP_005855063.1|0.000e+0100.00hypothetical protein NGA_0353800 [Nannochloropsis ... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3346rna3346Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications