rna3344, rna3344 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3344
Unique Name	rna3344
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1366
Alignment location	CM002461.1:165964..167730 -

Link to JBrowse

Properties


Property Name	Value
Product	dual specificity protein phosphatase
Orig transcript id	gnl\|cribi\|Naga_100226g13.10110.mrna
Orig protein id	gnl\|cribi\|Naga_100226g13.10110
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:165964..167730 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100226g13	gene3220	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3344	rna3344-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27340.1	cds3335	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002461.1:165964..167730-
coding sequence from alignment at CM002461.1:165964..167730-

mRNA sequence

>rna3344 ID=rna3344|Name=rna3344|organism=Nannochloropsis gaditana|type=mRNA|length=1366bp
TGCCAAGCTGTACAGGTACAATATCGTGTGAAAACACCGGCCTCTATTGC
ACGCACCTCATTTCCACACAAGAAATGAATATCTGTAATACATGTGACAG
GAAGATGGTGGAAGCTGCGATCGCGATGCGGGAAAAACTACCAGAGCAGG
AGCAGCACGAAGCTCAACGCGTCTCAAACGAGTGCAGCCCAGCACTCTCT
TCATTATCCTGTGTGTCACATACCCCCTCCAGCCAAGAATTAACCTTAGA
GACACAATGGAATGTAGGCATAGGTGGCGGCATATGGACGACAGGTCTTC
TACTTTGCGAGTATTTTGGGCGAAACGCCACTTTTTTTTCCAAAGTCCTG
TATGGCAAACGAATTATCGAAATAGGCTCAGGCACCGGCTTGGTGGCCCT
GTCCTTAGCCACCAATGCTCTATTTAAGCCGCAAGAAATTGTGGTTACAG
ATCAAAAGGATCATTTGGACCTTATCGAGCGTAATATTTGTGCCAATATT
GCTAAAATGAAGGCTCCGATTCGCGTGCAAGAATTCAACTGGCTAAAAGA
TAAAGAGACGAAGAATACTGATAGCAAGGTAAAAGCCCTCTGTGCCCTCC
CTTTTGACGTGGTCGTAGGAACAGATGTAGCCTACTGCCAAGAGCTTTAC
GGTCCCGTCGTCCATGCATTGTGTCGTTTGAGTGGCCCGCATAGCTTGAT
TTTACTGGGTGTGACACGTACGGACACGAACCCGAGGTTTTTCCAGCTAC
TGCAGGAAGAAGGCTTCGACTACTGTCTCACGCCTGTCGCGGATGGAGAG
AGCAGCTGCACAGTGGCAGGCGGATTTGCACTGCTAAGCGTCGTACGACG
AGTGGGATCATGATGCTTATGATGCCCAAGTCCGACGACAGAGGCATACG
TGAAAGCGGAATTTGATAACGAAGATGAACGGAAGATCCCAAAAACTGTC
TTTAGTGGCACGCGCAGATCAAGGTCATGTGAAAATGTTGCCGAACAAAA
GTAGCTGATTCTCTTCATACCAGCGTCAGTAGCAGAAGCTCAACGCTTTC
AACAGTTCATTTCGGATTCCGTGGCTTATTTCTTTTATTTCGGAGGTCAA
GCTCCACATAACAGCATGGCTGTGTCCCCAAATCGGTTTTCCTCGTACTT
GCTCAGGTCCAGGCTGACCTTGCCTCCTCGATGCTCCCTCTCCCACTCCA
CCAACTGGCCCATAAACCCCATATTCGGCGCGATGATCGCGCGTCGACTT
CGAGCGTACGTGAGAGCTTCGAGCAGACTCATGTCCTTGTTACTGTACAT
CAGGTAAGCGACAACGACGGCCCCGCTCCTACTCATCCCCTTCTTGCAGT
GTACCAAACACAAACC

protein sequence of rna3344

>rna3344-protein ID=rna3344-protein|Name=rna3344|organism=Nannochloropsis gaditana|type=polypeptide|length=368bp
MGCVQSKSSLFIGPHADEDSLPKPGKERMMEGEAPSSAFTGNAQSELPCQ
AENNSVHQREGNSRSLPTTWSTSSPRASTPGDCLLSPRLAAVAEHAAASV
DPGPHKESHVHGKVVKKRTLPVPFSAKGWLAFPAQAPINSGPRRPATNPT
PTSNHDVLLNASLTQSQGIVVALTKTTGGESGISARGRRPRPLAIPTDSH
FHLSTILGHLLIGGDEVSDNLTVMRQLNIKSVVNTTTEGDDSMGELCYLK
LNWRDDIAQPILPDLPRAFAAIDAAKAQGGLCLVHCKKGMSRSGAVVVAY
LMYSNKDMSLLEALTYARSRRAIIAPNMGFMGQLVEWEREHRGGKVSLDL
SKYEENRFGDTAMLLCGA

mRNA from alignment at CM002461.1:165964..167730-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3344 ID=rna3344|Name=rna3344|organism=Nannochloropsis gaditana|type=mRNA|length=1767bp|location=Sequence derived from alignment at CM002461.1:165964..167730- (Nannochloropsis gaditana)
GAATCGAAATGCTTTACTATTAGAGTTATCAAACCAAATGAATCTCGTTC
ATCATGAAATTAAGACTTAGATTATCTACGCCAATAAGAAAAAGAAAGCT
GAGATAGGCAGTGGTTTGAAAAGTTTACGGAGCACCCGAAAAAGGTTACG
TAAAGACGCGCACGGCAAGTTCCGTGCCAGTATTTGATCCTCTGTAAGGT
CCCCGTCCGGACTTTAGTAATTGCTTGTCAATAATCACATATTCACACAG
ATTACTGTCGAAAGCAAGACATCAGAGACCAAACGTCAAGATCTGCCCAT
TTTCTCTTTTGTCCCGGGCTGCAATCGTACGAGAAAATTCCAGTGGCGCC
CCTCCGTGCTCCGTGTTCATTCGAGCGCGACTCATAGTCGCTTGCAACGA
GTCTCACCTAGCTTTTGAAGCTAGCGATCTGATTCAAGTCAACATGGGAT
GTGTCCAAAGCAAGTCTTCCTTATTTATCGGCCCGCATGCTGACGAGGAC
AGCCTCCCTAAGCCGGGAAAGGAAAGAATGATGGAGGGAGAAGCACCAAG
TTCAGCATTCACCGGTAATGCTCAGTCGGAGCTACCGTGCCAAGCTGAAA
ATAATTCAGTTCATCAAAGAGAAGGAAATTCTCGTTCTTTGCCAACTACA
TGGTCGACCTCTTCGCCGAGGGCCTCTACCCCGGGTGATTGCCTCCTATC
TCCGCGGCTTGCTGCAGTCGCAGAACACGCTGCTGCTTCGGTCGATCCAG
GTCCACATAAGGAGTCACATGTGCATGGTAAAGTAGTCAAAAAGAGGACG
CTGCCCGTCCCATTTTCTGCGAAAGGTTGGTTGGCTTTCCCCGCCCAGGC
TCCCATAAACTCGGGCCCGAGGCGACCGGCAACGAACCCAACTCCCACGT
CCAACCACGACGTGCTCCTGAATGCTTCCTTGACCCAATCGCAAGGAATC
GTGGTGGCATTGACCAAAACTACCGGTGGTGAAAGTGGGATCTCGGCACG
GGGGAGACGGCCGCGGCCCTTGGCAATCCCCACCGACTCCCACTTTCATT
TGAGCACGATATTGGGGCATTTGTTGATCGGGGGGGATGAGGTCAGCGAC
AATCTGACGGTTATGCGTCAATTAAATATCAAAAGCGTCGTTAACACTAC
AACAGAAGGGGATGACAGCATGGGTGGTACGTTAAAGAGTAATATAGGAA
GACCGGGAGGGAGGCTGTATCCCCATTTTCCTCGACCCTGAAGGCTTTTT
CCTTCGAATCAAATTCACTCGCCTCTCACATCTGTGTTTGATTGTGTGTG
CTTGCAGTCTGCCTGCCCTGACTCCTCTTTATTCCTCTCTTCCTCTTTCT
TCAGAGCTCTGCTACTTGAAGCTAAATTGGAGGGACGACATTGCTCAACC
AATCCTCCCTGACCTTCCTCGGGCCTTTGCCGCCATCGACGCCGCCAAAG
CGCAGGGAGGTTTGTGTTTGGTACACTGCAAGAAGGGGATGAGTAGGAGC
GGGGCCGTCGTTGTCGCTTACCTGATGTACAGTAACAAGGACATGAGTCT
GCTCGAAGCTCTCACGTACGCTCGAAGTCGACGCGCGATCATCGCGCCGA
ATATGGGGTTTATGGGCCAGTTGGTGGAGTGGGAGAGGGAGCATCGAGGA
GGCAAGGTCAGCCTGGACCTGAGCAAGTACGAGGAAAACCGATTTGGGGA
CACAGCCATGCTGTTATGTGGAGCTTGACCTCCGAAATAAAAGAAATAAG
CCACGGAATCCGAAATG

Coding sequence (CDS) from alignment at CM002461.1:165964..167730-

>rna3344 ID=rna3344|Name=rna3344|organism=Nannochloropsis gaditana|type=CDS|length=2214bp|location=Sequence derived from alignment at CM002461.1:165964..167730- (Nannochloropsis gaditana)
AGCTCTGCTACTTGAAGCTAAATTGGAGGGACGACATTGCTCAACCAATC
CTCCCTGACCTTCCTCGGGCCTTTGCCGCCATCGACGCCGCCAAAGCGCA
GGGAGGTTTGTGTTTGGTACACTGCAAGAAGGGGATGAGTAGGAGCGGGG
CCGTCGTTGTCGCTTACCTGATGTACAGTAACAAGGACATGAGTCTGCTC
GAAGCTCTCACGTACGCTCGAAGTCGACGCGCGATCATCGCGCCGAATAT
GGGGTTTATGGGCCAGTTGGTGGAGTGGGAGAGGGAGCATCGAGGAGGCA
AGGTCAGCCTGGACCTGAGCAAGTACGAGGAAAACCGATTTGGGGACACA
GCCATGCTGTTATGTGGAGCTTGAATGGGATGTGTCCAAAGCAAGTCTTC
CTTATTTATCGGCCCGCATGCTGACGAGGACAGCCTCCCTAAGCCGGGAA
AGGAAAGAATGATGGAGGGAGAAGCACCAAGTTCAGCATTCACCGGTAAT
GCTCAGTCGGAGCTACCGTGCCAAGCTGAAAATAATTCAGTTCATCAAAG
AGAAGGAAATTCTCGTTCTTTGCCAACTACATGGTCGACCTCTTCGCCGA
GGGCCTCTACCCCGGGTGATTGCCTCCTATCTCCGCGGCTTGCTGCAGTC
GCAGAACACGCTGCTGCTTCGGTCGATCCAGGTCCACATAAGGAGTCACA
TGTGCATGGTAAAGTAGTCAAAAAGAGGACGCTGCCCGTCCCATTTTCTG
CGAAAGGTTGGTTGGCTTTCCCCGCCCAGGCTCCCATAAACTCGGGCCCG
AGGCGACCGGCAACGAACCCAACTCCCACGTCCAACCACGACGTGCTCCT
GAATGCTTCCTTGACCCAATCGCAAGGAATCGTGGTGGCATTGACCAAAA
CTACCGGTGGTGAAAGTGGGATCTCGGCACGGGGGAGACGGCCGCGGCCC
TTGGCAATCCCCACCGACTCCCACTTTCATTTGAGCACGATATTGGGGCA
TTTGTTGATCGGGGGGGATGAGGTCAGCGACAATCTGACGGTTATGCGTC
AATTAAATATCAAAAGCGTCGTTAACACTACAACAGAAGGGGATGACAGC
ATGGGTGAGCTCTGCTACTTGAAGCTAAATTGGAGGGACGACATTGCTCA
ACCAATCCTCCCTGACCTTCCTCGGGCCTTTGCCGCCATCGACGCCGCCA
AAGCGCAGGGAGGTTTGTGTTTGGTACACTGCAAGAAGGGGATGAGTAGG
AGCGGGGCCGTCGTTGTCGCTTACCTGATGTACAGTAACAAGGACATGAG
TCTGCTCGAAGCTCTCACGTACGCTCGAAGTCGACGCGCGATCATCGCGC
CGAATATGGGGTTTATGGGCCAGTTGGTGGAGTGGGAGAGGGAGCATCGA
GGAGGCAAGGTCAGCCTGGACCTGAGCAAGTACGAGGAAAACCGATTTGG
GGACACAGCCATGCTGTTATGTGGAGCTTGAATGGGATGTGTCCAAAGCA
AGTCTTCCTTATTTATCGGCCCGCATGCTGACGAGGACAGCCTCCCTAAG
CCGGGAAAGGAAAGAATGATGGAGGGAGAAGCACCAAGTTCAGCATTCAC
CGGTAATGCTCAGTCGGAGCTACCGTGCCAAGCTGAAAATAATTCAGTTC
ATCAAAGAGAAGGAAATTCTCGTTCTTTGCCAACTACATGGTCGACCTCT
TCGCCGAGGGCCTCTACCCCGGGTGATTGCCTCCTATCTCCGCGGCTTGC
TGCAGTCGCAGAACACGCTGCTGCTTCGGTCGATCCAGGTCCACATAAGG
AGTCACATGTGCATGGTAAAGTAGTCAAAAAGAGGACGCTGCCCGTCCCA
TTTTCTGCGAAAGGTTGGTTGGCTTTCCCCGCCCAGGCTCCCATAAACTC
GGGCCCGAGGCGACCGGCAACGAACCCAACTCCCACGTCCAACCACGACG
TGCTCCTGAATGCTTCCTTGACCCAATCGCAAGGAATCGTGGTGGCATTG
ACCAAAACTACCGGTGGTGAAAGTGGGATCTCGGCACGGGGGAGACGGCC
GCGGCCCTTGGCAATCCCCACCGACTCCCACTTTCATTTGAGCACGATAT
TGGGGCATTTGTTGATCGGGGGGGATGAGGTCAGCGACAATCTGACGGTT
ATGCGTCAATTAAATATCAAAAGCGTCGTTAACACTACAACAGAAGGGGA
TGACAGCATGGGTG

Synonyms

Publications