rna3340, rna3340 (mRNA) Nannochloropsis gaditana

Overview
Namerna3340
Unique Namerna3340
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length549
Alignment locationCM002461.1:157095..158108 -

Link to JBrowse

Properties
Property NameValue
ProductThioesterase superfamily
Orig transcript idgnl|cribi|Naga_100226g6.10108.mrna
Orig protein idgnl|cribi|Naga_100226g6.10108
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:157095..158108 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100226g6gene3216Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27338.1cds3331Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3340rna3340-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3340 ID=rna3340|Name=rna3340|organism=Nannochloropsis gaditana|type=mRNA|length=549bp
ATGGACGGCAGTCTGGGAATAAAGGGGACACGAAGCTTTAATAGCAAACC
TCCCCTGGCAAGCTTTTCCTGTCAGTACTCGTGGAAGACTGCTCGTCCGT
CTTGTCGCTGCCTCTTGCGCTCTCCACCGTGCCCAATGGTGGTATCGGGG
AAAGGGAGATATTTCGATGGACACCTCCGGCATCACCACGGGATGACAAG
TCTCCTCACGGGACAAACGGCCGAACCAGGCATCAAGAAGGGGGAAGAAA
ATAATAGAGGAAGAGGAGCCGCTGTCGACAAACGCGGAATTTTTGGCCCC
CGTGGAGTCGATAAAGGATTTGTTTCGCTTGCCTTGCAGTACTCATGGGG
TATCAGTGGCACTGCACAAATTTCAAGACACGCTCCTCATGGACGGCGCT
CTGCACGAAGTCTATTCTACCGAGGCCAAACCACGCGAGGAAGCAGGAGG
GAACGGCCCGGTGGACGACGCACGGGCCTGATGGTCATCCTGATCACCAG
GACAATGACGATGACTTCCACGCAGAGGAGGCCCATGGGGCGACGTTGA
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protein sequence of rna3340

>rna3340-protein ID=rna3340-protein|Name=rna3340|organism=Nannochloropsis gaditana|type=polypeptide|length=337bp
MRARPSLIAALKQSSRHEDALEFTQLFHSINFAHTLRVSDAVLERYDAKK
GLETTHEITKYLCRTDEGGTYLSAGVITAIFDEISTAACILQDRTHRPGV
SVALDVEVMANITPGRSLRLKTWADKIGKSLAFLRLDLRDAASDQLVAVG
KHCKYLPMAGVPFWDMAFTPLLYPIVRKSLLGLTRRHVATGERVNTHDAS
SIFDHFPLDNLTLENESDKGDERQRLQATRASLHVKPRHCNGLFKMHGGA
LAVAAEEIALLDVAARKKESTSQAPRARALSLHYLQANDRVVDLAAWTLQ
DACEKSGGEEGGDDGLLTQIEVRRGGKLCNSGSIIWQ
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mRNA from alignment at CM002461.1:157095..158108-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3340 ID=rna3340|Name=rna3340|organism=Nannochloropsis gaditana|type=mRNA|length=1014bp|location=Sequence derived from alignment at CM002461.1:157095..158108- (Nannochloropsis gaditana)
ATGCGGGCAAGACCATCACTCATTGCAGCCCTGAAGCAATCTTCGAGGCA
CGAAGATGCTCTAGAATTTACGCAACTTTTCCACAGTATCAACTTTGCTC
ATACGCTTCGAGTTTCGGATGCCGTCCTAGAGCGGTACGATGCCAAAAAA
GGTCTAGAAACCACGCACGAAATCACTAAATATCTGTGTCGTACAGATGA
AGGCGGCACATATCTTTCAGCAGGGGTGATCACGGCAATTTTTGACGAAA
TCTCCACGGCTGCATGTATCTTGCAGGATCGCACTCATCGTCCAGGCGTC
TCTGTCGCACTGGATGTGGAAGTGATGGCAAACATCACGCCTGGTCGGAG
TCTGCGTTTAAAAACCTGGGCAGACAAGATCGGGAAAAGTCTCGCTTTCT
TGCGTTTGGACCTGAGGGACGCTGCCAGCGATCAATTGGTGGCTGTCGGG
AAACACTGCAAGTATTTGCCAATGGCAGGCGTTCCATTTTGGGACATGGC
ATTCACGCCACTCTTGTACCCTATTGTTCGAAAATCTTTGCTTGGGTTAA
CACGCAGGCATGTGGCCACCGGGGAGCGTGTCAATACACACGATGCGTCC
TCAATATTTGATCACTTCCCCTTGGACAATTTGACACTGGAAAATGAATC
TGACAAAGGAGACGAGCGTCAAAGGTTGCAAGCAACCCGTGCCAGCCTTC
ATGTGAAGCCACGCCATTGCAATGGATTGTTTAAGATGCACGGAGGGGCT
CTGGCTGTTGCGGCCGAAGAAATCGCGCTTCTCGATGTCGCCGCCCGGAA
GAAAGAAAGCACATCCCAAGCCCCGCGGGCGCGTGCTTTGAGCTTGCATT
ACCTCCAGGCAAACGATCGAGTGGTTGACTTGGCAGCGTGGACGCTCCAG
GACGCGTGTGAAAAGAGCGGTGGGGAGGAGGGAGGGGATGATGGACTCCT
GACGCAGATTGAAGTCCGTCGTGGAGGGAAGTTGTGCAATTCCGGCAGCA
TTATATGGCAATAA
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Coding sequence (CDS) from alignment at CM002461.1:157095..158108-

>rna3340 ID=rna3340|Name=rna3340|organism=Nannochloropsis gaditana|type=CDS|length=1014bp|location=Sequence derived from alignment at CM002461.1:157095..158108- (Nannochloropsis gaditana)
ATGCGGGCAAGACCATCACTCATTGCAGCCCTGAAGCAATCTTCGAGGCA
CGAAGATGCTCTAGAATTTACGCAACTTTTCCACAGTATCAACTTTGCTC
ATACGCTTCGAGTTTCGGATGCCGTCCTAGAGCGGTACGATGCCAAAAAA
GGTCTAGAAACCACGCACGAAATCACTAAATATCTGTGTCGTACAGATGA
AGGCGGCACATATCTTTCAGCAGGGGTGATCACGGCAATTTTTGACGAAA
TCTCCACGGCTGCATGTATCTTGCAGGATCGCACTCATCGTCCAGGCGTC
TCTGTCGCACTGGATGTGGAAGTGATGGCAAACATCACGCCTGGTCGGAG
TCTGCGTTTAAAAACCTGGGCAGACAAGATCGGGAAAAGTCTCGCTTTCT
TGCGTTTGGACCTGAGGGACGCTGCCAGCGATCAATTGGTGGCTGTCGGG
AAACACTGCAAGTATTTGCCAATGGCAGGCGTTCCATTTTGGGACATGGC
ATTCACGCCACTCTTGTACCCTATTGTTCGAAAATCTTTGCTTGGGTTAA
CACGCAGGCATGTGGCCACCGGGGAGCGTGTCAATACACACGATGCGTCC
TCAATATTTGATCACTTCCCCTTGGACAATTTGACACTGGAAAATGAATC
TGACAAAGGAGACGAGCGTCAAAGGTTGCAAGCAACCCGTGCCAGCCTTC
ATGTGAAGCCACGCCATTGCAATGGATTGTTTAAGATGCACGGAGGGGCT
CTGGCTGTTGCGGCCGAAGAAATCGCGCTTCTCGATGTCGCCGCCCGGAA
GAAAGAAAGCACATCCCAAGCCCCGCGGGCGCGTGCTTTGAGCTTGCATT
ACCTCCAGGCAAACGATCGAGTGGTTGACTTGGCAGCGTGGACGCTCCAG
GACGCGTGTGAAAAGAGCGGTGGGGAGGAGGGAGGGGATGATGGACTCCT
GACGCAGATTGAAGTCCGTCGTGGAGGGAAGTTGTGCAATTCCGGCAGCA
TTATATGGCAATAA
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Synonyms
Publications