EWM27338.1, cds3331 (CDS) Nannochloropsis gaditana

Overview
NameEWM27338.1
Unique Namecds3331
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:157095..158108 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27338.1
ProductThioesterase superfamily
Orig transcript idgnl|cribi|Naga_100226g6.10108.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:157095..158108 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
Vocabulary: INTERPRO
TermDefinition
IPR029069HotDog_dom
IPR006683Thioestr_supf
Homology
BLAST of EWM27338.1 vs. NCBI_GenBank
Match: gi|585109543|gb|EWM27338.1| (Thioesterase superfamily [Nannochloropsis gaditana])

HSP 1 Score: 694.115 bits (1790), Expect = 0.000e+0
Identity = 337/337 (100.00%), Postives = 337/337 (100.00%), Query Frame = 0
Query:    1 MRARPSLIAALKQSSRHEDALEFTQLFHSINFAHTLRVSDAVLERYDAKKGLETTHEITKYLCRTDEGGTYLSAGVITAIFDEISTAACILQDRTHRPGVSVALDVEVMANITPGRSLRLKTWADKIGKSLAFLRLDLRDAASDQLVAVGKHCKYLPMAGVPFWDMAFTPLLYPIVRKSLLGLTRRHVATGERVNTHDASSIFDHFPLDNLTLENESDKGDERQRLQATRASLHVKPRHCNGLFKMHGGALAVAAEEIALLDVAARKKESTSQAPRARALSLHYLQANDRVVDLAAWTLQDACEKSGGEEGGDDGLLTQIEVRRGGKLCNSGSIIWQ 337
            MRARPSLIAALKQSSRHEDALEFTQLFHSINFAHTLRVSDAVLERYDAKKGLETTHEITKYLCRTDEGGTYLSAGVITAIFDEISTAACILQDRTHRPGVSVALDVEVMANITPGRSLRLKTWADKIGKSLAFLRLDLRDAASDQLVAVGKHCKYLPMAGVPFWDMAFTPLLYPIVRKSLLGLTRRHVATGERVNTHDASSIFDHFPLDNLTLENESDKGDERQRLQATRASLHVKPRHCNGLFKMHGGALAVAAEEIALLDVAARKKESTSQAPRARALSLHYLQANDRVVDLAAWTLQDACEKSGGEEGGDDGLLTQIEVRRGGKLCNSGSIIWQ
Sbjct:    1 MRARPSLIAALKQSSRHEDALEFTQLFHSINFAHTLRVSDAVLERYDAKKGLETTHEITKYLCRTDEGGTYLSAGVITAIFDEISTAACILQDRTHRPGVSVALDVEVMANITPGRSLRLKTWADKIGKSLAFLRLDLRDAASDQLVAVGKHCKYLPMAGVPFWDMAFTPLLYPIVRKSLLGLTRRHVATGERVNTHDASSIFDHFPLDNLTLENESDKGDERQRLQATRASLHVKPRHCNGLFKMHGGALAVAAEEIALLDVAARKKESTSQAPRARALSLHYLQANDRVVDLAAWTLQDACEKSGGEEGGDDGLLTQIEVRRGGKLCNSGSIIWQ 337          
BLAST of EWM27338.1 vs. NCBI_GenBank
Match: gi|585111305|gb|EWM28873.1| (acyl-coenzyme a thioesterase 13 [Nannochloropsis gaditana])

HSP 1 Score: 85.8853 bits (211), Expect = 5.437e-15
Identity = 82/281 (29.18%), Postives = 122/281 (43.42%), Query Frame = 0
Query:   58 ITKYLC-RTDEGGTYLSAGVITAIFDEISTAACILQDRTHRPGVSVALDVEVMANITPGRSLRLKTWADKIGKSLAFLRLDLRDAASDQLVAVGKHCKYLPMAGVPFWDMAF----TPLLYPIVRKSLLGLTRRHVATGE-------------RVNTHDASSIFDHFPLDNLTLENESDKGDERQRLQAT-------RASLHVKPRHCNGLFKMHGGALAVAAEEIALLDV--AARKKESTSQ--APRARALSLHYLQANDRVVDLAAWTLQDACEKSGGE 309
            +  +LC   +     L AG +TA FDE+S+ A +  D  HRPGVSV+L+  V++ +  G  + +++   KIG++L F  + L D A+ + +A G+H K+L M     W +A      PL Y +    LL   R+                   R     A +I     LDN  +   +          A+        AS  V P+ CN    +HGGA A+ AE  AL     AAR     SQ   PR R+LS+ Y+    +  +L         E+  GE
Sbjct:   73 VPSHLCDNYNNNHRLLDAGAVTAWFDEVSSWAFVSADGRHRPGVSVSLNTTVLSWVPVGTEVEIQSHCKKIGETLGFADMMLLDVATGKELAHGRHVKFLKMGTA--WTVAMHAWAFPLTYLMASAVLLPSVRQRTQKSSSFPPEMAPSPDLPRTEPGSAVNINRLLALDNFHVYEPAGAASPPLAFPASVPLTMEASASFRVIPQVCNSFGSLHGGAAAILAERAALALYHQAARWAGERSQHALPRVRSLSIDYMSPCKKNTELLLLVRGMRVERGAGE 351          
BLAST of EWM27338.1 vs. NCBI_GenBank
Match: gi|553183577|ref|XP_005853925.1| (thioesterase superfamily member 2 [Nannochloropsis gaditana CCMP526] >gi|422295137|gb|EKU22436.1| thioesterase superfamily member 2 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 74.3294 bits (181), Expect = 1.160e-11
Identity = 41/119 (34.45%), Postives = 67/119 (56.30%), Query Frame = 0
Query:   58 ITKYLC-RTDEGGTYLSAGVITAIFDEISTAACILQDRTHRPGVSVALDVEVMANITPGRSLRLKTWADKIGKSLAFLRLDLRDAASDQLVAVGKHCKYLPMAGVPFWDMAFTPLLYPI 175
            +  +LC   D     L AG +TA FDE+S+ A +  D  HRPGVSV+L+  V++ +  G  + +++   KIG++L F  + L D A+ + +A G+H K+L M     W +A     +P+
Sbjct:   73 VPSHLCDNYDNNHCLLDAGAVTAWFDEVSSWAFVSADGRHRPGVSVSLNTTVLSWVPVGTEVEIQSHCKKIGETLGFADMMLLDVATGKELAHGRHVKFLKMGTA--WTVAMHAWAFPL 189          
BLAST of EWM27338.1 vs. NCBI_GenBank
Match: gi|909569114|ref|XP_013140041.1| (PREDICTED: acyl-coenzyme A thioesterase 13-like isoform X2 [Papilio polytes])

HSP 1 Score: 71.633 bits (174), Expect = 1.245e-11
Identity = 36/91 (39.56%), Postives = 56/91 (61.54%), Query Frame = 0
Query:   66 DEGGTYLSAGVITAIFDEISTAACILQDRTHRPGVSVALDVEVMANITPGRSLRLKTWADKIGKSLAFLRLDLRDAASDQLVAVGKHCKYL 156
            +EGGT L  G I  + D +ST A +  D++   G+SV L V  MA ++ G  L ++  A K+G  +AFL + +R+  +DQL+A G+H KY+
Sbjct:   51 NEGGT-LHGGFIAHMVDTLSTFALLANDKSVGRGLSVDLSVSYMATVSEGDKLEIEAVAKKVGNKIAFLEVQIRNKENDQLIAKGRHIKYV 140          
BLAST of EWM27338.1 vs. NCBI_GenBank
Match: gi|1210511431|dbj|GAX29506.1| (hypothetical protein FisN_3Hh024 [Fistulifera solaris])

HSP 1 Score: 65.855 bits (159), Expect = 1.727e-8
Identity = 55/210 (26.19%), Postives = 97/210 (46.19%), Query Frame = 0
Query:   79 AIFDEISTAACILQDRTHRPGVSVALDVEVMANITPG-RSLRLKTWADKIGKSLAFLRLDLRDAASDQLVAVGKHCKYLPMAGVPFWDMAFTPLLYPIVRKSLLGLTRRH--VATGERVNTHDASSIFDHFPLDNLTLENESDKGDERQRLQATRASLHVKPRHCNGLFKMHGGALAVAAEEIALLDVAARKKESTSQAPRARALSLHYL 285
            AI D+++T + +  D   RPGVSV +++E   ++      L +     K+G++L F   ++RDAA+++++  G H K+LPM  +  + + +    +P+++    GL+     V+  ER++ H+  S FD                           S  VKP H +    +HGG  AV  E       A+   EST      +++S+ YL
Sbjct:   80 AIMDDLTTYSLMTVDGG-RPGVSVFMNMETTGSLLSSVERLAITARTRKVGRNLGFTSAEIRDAATNRMICHGSHIKFLPMGFLADYLLQYG---WPVIQW-WYGLSHFQPPVSAKERLSLHEVMSSFD-----------------------TNTGSFRVKPHHASLGGPIHGGCQAVLMEM-----AASTAAESTLPGCYLQSISIEYL 256          
BLAST of EWM27338.1 vs. NCBI_GenBank
Match: gi|675857176|ref|XP_009014148.1| (hypothetical protein HELRODRAFT_75909 [Helobdella robusta] >gi|555704304|gb|ESO07537.1| hypothetical protein HELRODRAFT_75909 [Helobdella robusta])

HSP 1 Score: 62.003 bits (149), Expect = 3.567e-8
Identity = 39/122 (31.97%), Postives = 63/122 (51.64%), Query Frame = 0
Query:   40 DAVLERYDAKKGLETTHEITKYLCRTDEG------GTYLSAGVITAIFDEISTAACILQDRTHRPGVSVALDVEVMANITPGRSLRLKTWADKIGKSLAFLRLDLRDAASDQLVAVGKHCKY 155
            D VL++   K+  E      + +C    G      G  L  G+   + D +STAA ++      PGVSV ++V  M     G  L + +   K+GK+LAFL ++++D AS++L+A G H K+
Sbjct:   21 DKVLQKLVVKEATEG-----RCVCELKVGDEHTNRGKTLHGGMTATLVDMVSTAA-LMTKENMGPGVSVNINVSYMQPAFIGNDLIIDSSVIKLGKTLAFLSVEIKDKASNKLIATGSHTKF 136          
BLAST of EWM27338.1 vs. NCBI_GenBank
Match: gi|551559290|ref|XP_005766582.1| (hypothetical protein EMIHUDRAFT_212187 [Emiliania huxleyi CCMP1516] >gi|485616900|gb|EOD14153.1| hypothetical protein EMIHUDRAFT_212187 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 64.3142 bits (155), Expect = 5.510e-8
Identity = 66/224 (29.46%), Postives = 98/224 (43.75%), Query Frame = 0
Query:   79 AIFDEISTAACILQ-DRTHRPGVSVALDVEVMAN--ITPGRSLRLKTWADKIGKSLAFLRLDL--RDAASDQLVAVGKHCKYLPMAGV-----PFWDMAFTPLLYPIVRKSLLG-LTRRHVATGERVNTHDASSIFDHFPLDNLTLENESDKGDERQRLQ----ATRASLHVKPRHCNGLFKMHGGALAVAAEEIALLDVAARKKESTSQAPRARALSLHYLQA 287
            A+ DEIST   +   D  HRPGVS++L   ++ +     G++L   T   K+G++L +L L++   D     L+AVG+HCK L   G          +   P +YP+V+      L  R +A      T  A    D FP     L   S  G     L     +   S  + P   N +  +HGGA  +  E+ A    A R     ++AP ARA ++  L A
Sbjct:   76 ALHDEISTYGGMAPWDARHRPGVSISLSGRLVGSALCDAGKALHFVTRPLKLGRTLGYLELEIWSGDGEPRDLLAVGRHCKALKFPGSSAALGSLLQLGGHPAVYPLVQPIAYNWLASRPIAPPPLQPTRRA----DLFP----PLAALSASGGVSSLLPDAAFSCDYSTPLSPALANMIGSLHGGAACILGEQAA--STALRDSLGLAEAPPARAFAVQLLSA 289          
BLAST of EWM27338.1 vs. NCBI_GenBank
Match: gi|909569112|ref|XP_013140040.1| (PREDICTED: acyl-coenzyme A thioesterase 13-like isoform X1 [Papilio polytes])

HSP 1 Score: 62.003 bits (149), Expect = 9.433e-8
Identity = 33/85 (38.82%), Postives = 51/85 (60.00%), Query Frame = 0
Query:   66 DEGGTYLSAGVITAIFDEISTAACILQDRTHRPGVSVALDVEVMANITPGRSLRLKTWADKIGKSLAFLRLDLRDAASDQLVAVG 150
            +EGGT L  G I  + D +ST A +  D++   G+SV L V  MA ++ G  L ++  A K+G  +AFL + +R+  +DQL+A G
Sbjct:   51 NEGGT-LHGGFIAHMVDTLSTFALLANDKSVGRGLSVDLSVSYMATVSEGDKLEIEAVAKKVGNKIAFLEVQIRNKENDQLIAKG 134          
BLAST of EWM27338.1 vs. NCBI_GenBank
Match: gi|1199394753|ref|XP_021192508.1| (acyl-coenzyme A thioesterase 13-like [Helicoverpa armigera])

HSP 1 Score: 59.6918 bits (143), Expect = 1.959e-7
Identity = 29/87 (33.33%), Postives = 49/87 (56.32%), Query Frame = 0
Query:   72 LSAGVITAIFDEISTAACILQDRTHRPGVSVALDVEVMANITPGRSLRLKTWADKIGKSLAFLRLDLRDAASDQLVAVGKHCKYLPM 158
            L  G I  + D +ST A    ++    GVSV L+V  M+    G ++ ++    KIGK +AFL + +++   +QL+A G+H KY+ +
Sbjct:   56 LHGGFIAHLVDAVSTYALTTNEKVDTRGVSVELNVSYMSAAREGDNVEVEAITKKIGKKIAFLEVQVKNKDKNQLLATGRHTKYIGI 142          
BLAST of EWM27338.1 vs. NCBI_GenBank
Match: gi|551633755|ref|XP_005819729.1| (hypothetical protein GUITHDRAFT_148387 [Guillardia theta CCMP2712] >gi|428163691|gb|EKX32749.1| hypothetical protein GUITHDRAFT_148387 [Guillardia theta CCMP2712])

HSP 1 Score: 62.003 bits (149), Expect = 2.906e-7
Identity = 78/284 (27.46%), Postives = 119/284 (41.90%), Query Frame = 0
Query:   58 ITKYLCRTDEGGTYLSAGVITAIFDEIST-AACILQDRTHRPGVSVALDVEV--MANITPGRSLRLKTWADKIGKSLAFLRLDLRDAASDQLVAVGKHCKYLPMAGVPFWDMAFTPLLYPIVRKSLLGLTRRHVATGERVNTHDASSIFDHFPLDNLTLENESDKGDERQRLQATRASLHVKPRHCNGLFKMHGGALAVAAEEIALLDVAARKKESTSQAPRARALSLHYLQA-NDRVVDLAAWTLQDA-CEKSGGEEGGDDGLLTQIEVRRGGKLCNSGSIIW 336
            +  + C  D G   LSA  +TA+FDEIST A C   DR+ R G+SV L        ++  G  L   T   KIGK+L F+  ++   A   L  + +H K++PM    F+     PL+ P     L           +RV      S  + FPL NL  E  S   D             +  RH   L  +HGGA  +    +A    A  +++ T   P  R++S + + +   RV       L+ + C  SG  +       + + +++ GK+    SI W
Sbjct:   51 VPSWSCNPD-GRVCLSA--VTAMFDEISTVAGCAAWDRSMRTGLSVQLFSRAHRSLDVGSGDKLVFTTKLRKIGKTLGFVDGEVATEAGVTLANM-RHIKFMPMGS--FYAFIAHPLMQPTTLAVLNAFLSLRPLQHDRV----PQSKEELFPLRNLRTEGSSSFADT-----------SITDRHATALGGIHGGAGVMLLTRMA---AAGAERDLTLPIP-IRSISTNLINSVPTRVGRETEVQLESSLCLGSGLPD------YSYVMIKKEGKIMMDSSIFW 303          
The following BLAST results are available for this feature:
BLAST of EWM27338.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109543|gb|EWM27338.1|0.000e+0100.00Thioesterase superfamily [Nannochloropsis gaditana... [more]
gi|585111305|gb|EWM28873.1|5.437e-1529.18acyl-coenzyme a thioesterase 13 [Nannochloropsis g... [more]
gi|553183577|ref|XP_005853925.1|1.160e-1134.45thioesterase superfamily member 2 [Nannochloropsis... [more]
gi|909569114|ref|XP_013140041.1|1.245e-1139.56PREDICTED: acyl-coenzyme A thioesterase 13-like is... [more]
gi|1210511431|dbj|GAX29506.1|1.727e-826.19hypothetical protein FisN_3Hh024 [Fistulifera sola... [more]
gi|675857176|ref|XP_009014148.1|3.567e-831.97hypothetical protein HELRODRAFT_75909 [Helobdella ... [more]
gi|551559290|ref|XP_005766582.1|5.510e-829.46hypothetical protein EMIHUDRAFT_212187 [Emiliania ... [more]
gi|909569112|ref|XP_013140040.1|9.433e-838.82PREDICTED: acyl-coenzyme A thioesterase 13-like is... [more]
gi|1199394753|ref|XP_021192508.1|1.959e-733.33acyl-coenzyme A thioesterase 13-like [Helicoverpa ... [more]
gi|551633755|ref|XP_005819729.1|2.906e-727.46hypothetical protein GUITHDRAFT_148387 [Guillardia... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3340rna3340Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications