rna3338, rna3338 (mRNA) Nannochloropsis gaditana

Overview
Namerna3338
Unique Namerna3338
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2277
Alignment locationCM002461.1:155368..155856 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100226g4.10113.mrna
Orig protein idgnl|cribi|Naga_100226g4.10113
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:155368..155856 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100226g4gene3214Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27343.1cds3329Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3338rna3338-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3338 ID=rna3338|Name=rna3338|organism=Nannochloropsis gaditana|type=mRNA|length=2277bp
ACAAGTCTAGGCACGAGGGAAAAAGTCTGGCCACGAGGGGAAATGTAGGA
AATTTTGTTTTACAGGTAATAGGGTTCTATGTGCGTATTTCCGTCAAACC
ATTTGTCTGAGTTTGATTCCTATTGAATCTGAGAAATGCCTGTGCGAGTG
AAGCGTTTTATTCCGACCCCAGTCCCTCAGGTTTCTAGGTCCATGTACCA
CATGGCAGACTATCCCAAAAGTACTACGACAGCCCCTCAAATCTTTTGCT
CTGTGGAACTCAACGAGAATAATTCAATTTCGATTCAACTTTTCTGCAGG
GCGGAATTCACTCCAGGTTTTTCCAGGTTTTAATCTCCCTTCGCCGCCAT
TTAACCTGTGGGAGTACTCGCTCACATGAGAATGTATCGGAACGCTTTAT
AAGAAAGCTCGCTTCATGTTAGCGGCACGCCGAGCTTTTGCTAGAATCAT
TGTGCTCAGTGTTGTAGTGGTGCTACTCGTATGGTTCGTCCAAACGGATG
TGAGCTATGTTGGCGTTCTGCTGAGCACCTCGACACCCATTTCGAGAGGT
AATGCTGCGAGTAGCTGTTGCCACCGGTGCACGGAGAGTCAGGGTGAAGT
GATATACCAAGGCGGTGCAGAATGGAAACGGTATGGCGACCCAACGCCAC
CACGTCCTCCGGAGCCGGTATGGCAGCTATTCGAACAGCCTGGGCATCCA
TACGTCTTCGCAGACAGTCTAGGGCCTAATTCGACTCTGAAAATGTTCCG
AGAGTGCTGTGTATGCCCTGTTCACCAGATAGGGCGGGTTCTTATCTTGG
TCTCTGAGACGCGTGATTTATTATTGGGTGTTGATCCCAACACAACAGTT
GCCCAGCTCTCTTATCCCGCGAAAACCGCAATCATGAACAAACAGTACGC
GGATGCGCATGGCTACGATTTTGTGTATTCAAGGCCTGGAGTGACAGCTA
CGTTTCGGGAAATGATGTGGGCTGCCTTGGAAAAGGAGAGTAAAGCTTCA
GATTGCAAATTTGCTGCCCCTCTCTGGCATTTCAATAGAAGCTCATTGCG
GTCCGCACCATGGGCAAAGCTGCCAGCAGCTTGGCATTTCGCATTGGAAT
ATGATTGGATTGTGTCGATTGACTCCGATGCAGTATTTCGTAACATGAGT
TGGAAATTGCCGCAGAGCTTGGCTGCATTGAGACCCGACCAGGACTATCT
GTTCTTGTCCAATATGCCGTTTTCTTACATGATGCCGTGCTCAGGGGTTT
TTGTGGTGCGGGGCGGTGATCGTGGAAGGAAACGACTGGAGACGTGGTGG
AACACCATATCACAAACTGATCGAAGGCATGCGTATGAACAAACTGCGCT
TTGGCAGCGCATCACTCCTCAAACGTGGGCAGGGACTCAGTACGATGCTG
ACTTCGCGAATGCAGGAGTCAGAATTGATGTTGCTCAGTTTTACCGTTCC
GGTGGATACTGGCCTGTATCAAAGCCGCACAGTTGGATTGTGCATGTGGG
CTCGACGGAGCTCGTGGGAAGAGCGTCAATCTTTGATGGCATCTTGGAGG
AACGGAACATAAGCCTGCAGGCCCGCGCATTGCCCCTACTGCAGCAAATC
CCAACCGCGCTCATTAACGGCAATGCTGTTGCTTTGGACATGGAGAAGTT
CAACTCAGCCAACGTCTCCAACTGGCTTGAAGGTACCCTGGACTCAGTAT
GCACGTCAAGATAGTCAACTGCGAGCTCGTCGCATATCCGGTTTATGTGA
GTTGTCAGGGGTTTAAATCAAGTCTATGAATAAGTGCTTCAAAAGGTGCA
AGAGCGTGCCGTGGAGGAACGTCTGCAATGGATCGCCTTTCTCGATACTG
ACGACTTCGTCCTATCTTCAATTCCCAGTGAGAGATTATCCGAAACCCTC
AACGAGAATTAAGTGGAGGAAGCATGCTTAAGGATACATCGAACCTGGTG
TGGGTCATTCCAGCATAAGAAGGCTTGGCATCCAGTGACTGCGGCGACAG
CATCGCAAATCCCAAAGTACTCGCAAACATTCACCCGGAAGAAAAAAACA
TAAATGCAATAGCGCTCAAGGTTATCCATGCTTTTGTAGATCAAGACAGG
ATTCCGTGCAAGAGTCAGTGAGACATAAGAGATATCCGCATCAACGCGAA
AATTGCTTTGTTATCAAACGTCTCGGAGAAGGGTTTGCTTACGATACCTA
TACGTCATGCAACCTTCGCGGGACGGCGACCTTTTCCTTTGTTAAAAAAT
ATGCCTATGGTGATGCGAGGAGTCCAA
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protein sequence of rna3338

>rna3338-protein ID=rna3338-protein|Name=rna3338|organism=Nannochloropsis gaditana|type=polypeptide|length=162bp
MTNVIGPSSAQSSPQRRRLNSNSTASAAEMAKVTTGNSAVQVATAFFRQQ
IDGYREKLQRWVGKKALLRRECVMTTGASKPAARGGSRRKGSTCASEVCR
GPPKSKRRKRNALFLRTIIFTHTYIYIYIIHMRLHAMRTIFAGLIPGYSS
ADCCSRSDYEIS
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mRNA from alignment at CM002461.1:155368..155856-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3338 ID=rna3338|Name=rna3338|organism=Nannochloropsis gaditana|type=mRNA|length=489bp|location=Sequence derived from alignment at CM002461.1:155368..155856- (Nannochloropsis gaditana)
ATGACGAATGTAATTGGGCCTTCTTCGGCGCAAAGCTCCCCGCAGAGGCG
CCGCCTCAACTCCAACAGTACGGCATCCGCGGCGGAGATGGCAAAGGTTA
CCACGGGGAACAGCGCGGTGCAGGTTGCCACGGCTTTCTTCCGCCAACAG
ATTGATGGCTACCGGGAGAAGCTCCAAAGGTGGGTGGGGAAGAAGGCTCT
GCTAAGGAGGGAGTGTGTGATGACGACGGGGGCGTCTAAACCTGCGGCGA
GGGGCGGGAGCCGGCGGAAGGGCTCCACTTGTGCCTCGGAGGTGTGCAGA
GGCCCGCCCAAGTCTAAGAGGAGGAAGAGGAATGCTCTCTTTTTACGCAC
CATCATCTTCACGCATACGTATATATATATATATATCATACACATGCGGC
TTCACGCTATGCGTACAATATTTGCTGGATTGATACCTGGATATTCTTCT
GCAGATTGCTGTAGTCGATCAGATTACGAAATTTCATGA
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Coding sequence (CDS) from alignment at CM002461.1:155368..155856-

>rna3338 ID=rna3338|Name=rna3338|organism=Nannochloropsis gaditana|type=CDS|length=489bp|location=Sequence derived from alignment at CM002461.1:155368..155856- (Nannochloropsis gaditana)
ATGACGAATGTAATTGGGCCTTCTTCGGCGCAAAGCTCCCCGCAGAGGCG
CCGCCTCAACTCCAACAGTACGGCATCCGCGGCGGAGATGGCAAAGGTTA
CCACGGGGAACAGCGCGGTGCAGGTTGCCACGGCTTTCTTCCGCCAACAG
ATTGATGGCTACCGGGAGAAGCTCCAAAGGTGGGTGGGGAAGAAGGCTCT
GCTAAGGAGGGAGTGTGTGATGACGACGGGGGCGTCTAAACCTGCGGCGA
GGGGCGGGAGCCGGCGGAAGGGCTCCACTTGTGCCTCGGAGGTGTGCAGA
GGCCCGCCCAAGTCTAAGAGGAGGAAGAGGAATGCTCTCTTTTTACGCAC
CATCATCTTCACGCATACGTATATATATATATATATCATACACATGCGGC
TTCACGCTATGCGTACAATATTTGCTGGATTGATACCTGGATATTCTTCT
GCAGATTGCTGTAGTCGATCAGATTACGAAATTTCATGA
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Synonyms
Publications