EWM27343.1, cds3329 (CDS) Nannochloropsis gaditana

Overview
NameEWM27343.1
Unique Namecds3329
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:155368..155856 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27343.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100226g4.10113.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:155368..155856 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of EWM27343.1 vs. NCBI_GenBank
Match: gi|585109548|gb|EWM27343.1| (hypothetical protein Naga_100226g4 [Nannochloropsis gaditana])

HSP 1 Score: 335.495 bits (859), Expect = 1.420e-116
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 0 
Query:    1 MTNVIGPSSAQSSPQRRRLNSNSTASAAEMAKVTTGNSAVQVATAFFRQQIDGYREKLQRWVGKKALLRRECVMTTGASKPAARGGSRRKGSTCASEVCRGPPKSKRRKRNALFLRTIIFTHTYIYIYIIHMRLHAMRTIFAGLIPGYSSADCCSRSDYEIS 162
            MTNVIGPSSAQSSPQRRRLNSNSTASAAEMAKVTTGNSAVQVATAFFRQQIDGYREKLQRWVGKKALLRRECVMTTGASKPAARGGSRRKGSTCASEVCRGPPKSKRRKRNALFLRTIIFTHTYIYIYIIHMRLHAMRTIFAGLIPGYSSADCCSRSDYEIS
Sbjct:    1 MTNVIGPSSAQSSPQRRRLNSNSTASAAEMAKVTTGNSAVQVATAFFRQQIDGYREKLQRWVGKKALLRRECVMTTGASKPAARGGSRRKGSTCASEVCRGPPKSKRRKRNALFLRTIIFTHTYIYIYIIHMRLHAMRTIFAGLIPGYSSADCCSRSDYEIS 162
[Close]
BLAST of EWM27343.1 vs. NCBI_GenBank
Match: gi|585100178|gb|EWM20503.1| (hypothetical protein Naga_100607g4 [Nannochloropsis gaditana])

HSP 1 Score: 103.99 bits (258), Expect = 6.601e-26
Identity = 49/69 (71.01%), Postives = 57/69 (82.61%), Query Frame = 0 
Query:   30 MAKVTTGNSAVQVATAFFRQQIDGYREKLQRWVGKKALLRRECVMTTGASKPAARGGSRRKGSTCASEV 98
            MAK+  GN+AVQV +AF R Q+DGYREKLQ WVGK+AL  R  V+TTGA +PAAR GSRRKGSTCASE+
Sbjct:    1 MAKIAKGNNAVQVGSAFVRHQVDGYREKLQGWVGKQALRERGGVVTTGAPQPAARSGSRRKGSTCASEM 69
The following BLAST results are available for this feature:
BLAST of EWM27343.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585109548|gb|EWM27343.1|1.420e-116100.00hypothetical protein Naga_100226g4 [Nannochloropsi... [more]
gi|585100178|gb|EWM20503.1|6.601e-2671.01hypothetical protein Naga_100607g4 [Nannochloropsi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3338rna3338Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications