rna3334, rna3334 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3334
Unique Name	rna3334
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3410
Alignment location	CM002461.1:147081..148124 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_101810g1.2189.mrna
Orig protein id	gnl\|cribi\|Naga_101810g1.2189
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:147081..148124 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_101810g1	gene3210	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3334	rna3334-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27348.1	cds3325	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002461.1:147081..148124-
coding sequence from alignment at CM002461.1:147081..148124-

mRNA sequence

>rna3334 ID=rna3334|Name=rna3334|organism=Nannochloropsis gaditana|type=mRNA|length=3410bp
CGCTAGGCCAAGCAAATTCCCTTATACCCCCTCGCATTCCCGTTGGTCTG
GACACACTTCATCCTTATCAATACACTGGCATTGCCACGGGGTGTCCAGC
CTCGTTTTTGTTGTCATTCTCTCCGGCCGATGTCGGCGGACTCGGGGGCA
CTCCTGGGATTAACCCCTGCATCATGATCCTCGTCCCTCCCCCATATTAC
TACCACGCCCGGGCAACTCACAACTCCTATTTTGCGCATGTTCTTTCTAA
GATAGTGTCAGGTGTACCCGTGCCGGGTTAGAAGTTTGGTGAGGGACGAC
TTGATCGTTTTTGTCCATCGCTATTTCCCGGCGCCCACACAACGTGTAAC
CCCCCTCACTCTTTGGGGATCGAATCATCGATGGCAACCCTTTCGAAGGA
GGACTTCATGGACGAAGACCTCGACTTATCGGGTTTGGATGAAGACTTGT
TCATTGGTTTGATGGGTGAAGGGGAGGGAGTGAATACTTTCATGCTAGAC
GACGTCAGGGAGGATGGCCTGACATGTCCGTCGGTGGTGGATGATTCGCC
TTCCCCTTTCACTGCTGTCTCTGCGGCGGTAGCCACGAGTTTCAAGGCGG
AATGCATGGATGACGATCAATCGAGCCATGTGCACGGGGAGAGTTCAGCA
GAGGCGTTTGACCTGGGCGTATTACCGGAAAGCATCCATGCGCAGCAGCA
GGATGGAATTATTCCGGAGCAAGAAAACCAATCAGGACTCAAACGAAACG
CCCATCCGCGAAAACTATCAGACACTGGCTCTTTATCCTCACCGCACGCA
CAACAATCCCCCCATTTCCGGGGCCAGCCCCTCCCACGGCGATGGCCGGA
GCAAGACGAGGCATGTCGGCAAGGGAGGCCGGCCCTCGCTCCCCTCCTAC
CCAAAGGGGCCGCCTGCACCAAGCGGCCTTTACCCCGGAGCGACAGCCAT
ACCCGCAGTGGTGGTAGTATAGGGAAGGGAGAGAGCGACGGTCGACGCGT
CGTGAAAAGCGAATCTTTCCGATCTGGGAGGCCGCCACCTCTCTCGTGTT
TTATGGGCCCCGGGGCCGATTGGGAAGGAGGGGAGCGTTCGGGAAAACTC
CAAGACGCGAAAATGGACCGTCACACTCTCAAGCGCCCTGCCTTGGAAGA
CATCAGGAGCACGCCTTCGTCCTGCTCCTCCTCCACCTCCACCGGCAGCA
GTCACAGCCGCAGTGGTGGGAATGAGGACGCGGAGCTCACCTCCGCCTTG
GCGGCTCTGGAACGCCAGGGCTTGGCGCCACAGGAACTGAAGAAACAGCG
ACGCTTGATCAAGAACCGGATGGCGTCCCAGCAGCACCGGGAGCGGCAGA
AGCAGCAGCTCGAGCACCTGCAAGCCTCCTTGGCGGCGAAGGAGGAGGAA
ATCATGGCCTTGCGGGTAGAGAGGGACGTGCTGCGGACAGCCAACGGCGA
AATGAAGAAAGAATTGGGCAGCCTGCGTCATGCGCTCGGCGTTCCAGGAC
CTGAGGGGGGAGGCGGGGGGCTGGGGAGCGAGGGAAGGGGGGGGAGAGCG
GGTGGCTGGCATGCCTCCCCTTCCCTGTCGAGTCTCAGCGAGGGAACTAC
CAGCAGCGAGAGCGAACGCTCCGCGTCCTCCCCCTCACCTTCGTTGACCA
ACAGCCCCGTCTCTCTGCTTCATCAAGGGACGGAGGAAGCGAGGGAGGGA
GGGGGCGAGGGAGGCTACCTTTCGGACGACCCGTCGTCCCAGGGTGGGCG
GGGAAATGGGGAAGCGTTCGCGCGTTTGTTCCCTTTTTCCCGTTCTCCTT
CTCCCTCCGCAGTGTACACGCCCCCTACAGGCGCCGGCGAGCAAAGGGAC
GGAAGCCAGGGCGGAGGAGTGGGGGAGGGAGGGAGGGGGGGGGGGTACGG
CCGGGGGGGCTTCCCCCGTATTTTGGAGCCCTCTTCCTCTTCACTTTCTT
GGCGGCGCCTTCCACCTTCCTTTTGGGAACTTTCCGGCGCGCCACCAGCA
GCAGCCGTTTCGGCGGTTTTCTCGGGGAAAGCGCCCTCCCGTCTGCGTCC
CTGGCCGGCCCATTGGTGACGGTGCACGCGGTCAAAGACTTGACGGTCCC
TTGGCTCGCCGCGTCGTGGGCGGAAAATCGACCCGAGTCCGAGGTCGCTG
CAGGCGGGGAGAAGGCCTACCTGATCGATCCGGTGGAGCGTCAACCCCAC
AAGTGGCTGGCGGTGGGCGGGCAGGGCACAGGGAGCGGGGAAAAGGGGGG
GAAAGGGAGGGAGGGAGGGTGGGGTGGACGACGGCGCCCCCTGGCGCTTT
GGGGAAAGCTTTGAGCTGCGCGTAGGGACCGGAGGAGGGCGGGGGGGAGG
GCGGGGGGGAGGAAAGGGGGTCGTGCGGAACGAGACTCGGACTACCTTCC
CCCCTCCCTCCGCCCCCGCCTCGACGCCCCCGACGCGCTTGCGCAAACAG
GAGCGGGCCAAGGCCCAGCTGAAGTCGGAGGGCGGGAAGGAGGGAGGGGT
GGAGGGCGTCAGGAGCAACTTTCCCTTGACGGAGGACGCGGCCAAACAGG
TGGATTTCTACACGGGGCGGGACGGGCGGGGACAGCACGGAAAGCAGGTG
GCGGCGCGGGAGGGCGGGAGGGAGGAAGGGGGGTGGGAGGGAGGGAGGGA
GGGAGGGAGGGAGAGGGGGAGGGGTCAAACCTCCTACCTGTTTTGTCCCC
AGGCCTTCGGTGTCATGGGCCAAGATCTGTCCTCCGGGTATCTTGCGGGA
GTCGAGCAGCTGAGAGTGTTGAGGGAGGGCGGGAACGAGGGAGGGCGGGA
AGGGGGGGCGACGGCGTCGGTGTGGCCCCGCAATTCGACCCTGGCAGTAG
CAGAGGACGACGGGGAGGAGGAAGGGGAGGCTCGCGACGAGGGCCATGGG
GAAGTCCGGGAAGGAAGGAAGGAGGAGGGAGGGAAGGAGGGGAGGGAAGG
AAGGAAGGAGCTCGATGCGTCCTCGCAGCTTTATTTTTTGCTCCCGGCCC
ACACATTGGACTGGGCGGGGCAGGTACCCGAGGAAACAGCGTCATCGAGG
GAGGGGAGGTGGTTGGAGGTAGGCTGTGGGTTGACCTCTGTGAGGATCGT
GAAAGACGTGAGTTTTGCGGGCACTGGGGCAACGGCGTAGATAGGAGGGA
AGGAGGGAGGGAGGGAGGGAGATTTACCGGGTGTGAGGTTTTGTGCGCTA
TAGTGTTGTAGGCAAGCCATTCGTTGACAAATACGCAAACAAAATCGATG
GGCACTGAAAGAGATGTAGTCGAGGGCAAAAATATTGAATAAGAAATTGA
GGCGAGGCGTCGTGGCTAGAAAAACTGTGATAGGACAGGCGGACAGAGTC
GATAGTCTGAAAACTAAAAAGAAAAGAGGGGTGTCGAAACGATTTATCAA
CGCACTGGGA

protein sequence of rna3334

>rna3334-protein ID=rna3334-protein|Name=rna3334|organism=Nannochloropsis gaditana|type=polypeptide|length=140bp
MSAWWATSLPDTASLPPTFPSWTYPFSSLCPAPSVRPSTLRPLRSLARPK
LGPMKTKRGRGRCRCWGGGREGSTEGGREGRWKLARALRDPRRCCEGGER
GEGREGRREGGRGGGREGGREGGGAEPVKCFLIGSLCIKG

mRNA from alignment at CM002461.1:147081..148124-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3334 ID=rna3334|Name=rna3334|organism=Nannochloropsis gaditana|type=mRNA|length=1044bp|location=Sequence derived from alignment at CM002461.1:147081..148124- (Nannochloropsis gaditana)
ATATACCCTTATATGTGCCCGATCTGCTTCCACTTCTTCCCGTCCATCTT
GGTTGCTGCCTCCTGCTGCGGACATTACGTCTGCTATGAGTGCTTGGTGG
GGTACGTGGAGGGGTGGGGTGGAAGGGGAGGAGGGAGGGAAGAAGGGAGG
GAGGCAGAGAGGGAGGGAGAAAGGAAGGGAGGGAGAAAGGGAGGGAAAGA
GGGAGGAAGGCGGGCAGGGGAAGACAGAGAAGACAATCACGTCTACGAAG
ACGTGACAATTTTTGTAGGGATGTGGTCTTTATCGTCTCCGCCCTTCTCC
TTCTCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCGCCAGCT
ACGTCGCTACCCGATACGGCGTCTCTCCCGCCGACCTTCCCTTCCTGGAC
GTACCCTTTCTCTTCCCTTTGCCCTGCCCCCTCTGTGCGTCCCTCGACTT
TGCGCCCACTCCGGTCTCTCGCACGGCCAAAATTAGGTCCTATGAAGACG
AAGCGAGGGAGGGGGAGGTGCCGGTGCTGGGGGGGGGGGAGGGAGGGAAG
CACGGAGGGGGGGAGGGAAGGGAGGTGGAAGCTGGCTCGAGCCCTGCGCG
ATCCGCGGCGATGTTGTGAGGGAGGAGAACGTGGGGAGGGGAGGGAAGGG
AGGAGGGAGGGAGGGAGGGGAGGAGGGAGGGAGGGAGGGAGGGAGGGAGG
GGGGGCGGAGCCGGTGAAATGTTTTCTCATCGGCAGCTTGTGCATAAAGG
GGTAAAAGTGGAGGGAAGGGGCAAAAGTGAGAAGATCCGTCTCCAACCAA
AAGATTTTTGTTCGACGTGAAGAGGCATCTGGAAAGATACCTCTTCAACG
AGGGAAGATACCTCTTCAACATGTGAAAGCGTCCTGGCCAAGTCTCGAAG
AGTAACGGCGATCCGATCCGTTCTTTTCATGCTTTGCTTCTTTAAACATT
CGACTTTTGCATTGCGGGTATGATTGCTTCATCCTTTTGAATTCATATTT
TGCTCTTTGCAAGGGGATACTTTGACGCCTGCAGATACACGAGG

Coding sequence (CDS) from alignment at CM002461.1:147081..148124-

>rna3334 ID=rna3334|Name=rna3334|organism=Nannochloropsis gaditana|type=CDS|length=846bp|location=Sequence derived from alignment at CM002461.1:147081..148124- (Nannochloropsis gaditana)
CTACGTCGCTACCCGATACGGCGTCTCTCCCGCCGACCTTCCCTTCCTGG
ACGTACCCTTTCTCTTCCCTTTGCCCTGCCCCCTCTGTGCGTCCCTCGAC
TTTGCGCCCACTCCGGTCTCTCGCACGGCCAAAATTAGGTCCTATGAAGA
CGAAGCGAGGGAGGGGGAGGTGCCGGTGCTGGGGGGGGGGGAGGGAGGGA
AGCACGGAGGGGGGGAGGGAAGGGAGGTGGAAGCTGGCTCGAGCCCTGCG
CGATCCGCGGCGATGTTGTGAGGGAGGAGAACGTGGGGAGGGGAGGGAAG
GGAGGAGGGAGGGAGGGAGGGGAGGAGGGAGGGAGGGAGGGAGGGAGGGA
GGGGGGGCGGAGCCGGTGAAATGTTTTCTCATCGGCAGCTTGTGCATAAA
GGGGTAAATGAGTGCTTGGTGGGCTACGTCGCTACCCGATACGGCGTCTC
TCCCGCCGACCTTCCCTTCCTGGACGTACCCTTTCTCTTCCCTTTGCCCT
GCCCCCTCTGTGCGTCCCTCGACTTTGCGCCCACTCCGGTCTCTCGCACG
GCCAAAATTAGGTCCTATGAAGACGAAGCGAGGGAGGGGGAGGTGCCGGT
GCTGGGGGGGGGGGAGGGAGGGAAGCACGGAGGGGGGGAGGGAAGGGAGG
TGGAAGCTGGCTCGAGCCCTGCGCGATCCGCGGCGATGTTGTGAGGGAGG
AGAACGTGGGGAGGGGAGGGAAGGGAGGAGGGAGGGAGGGAGGGGAGGAG
GGAGGGAGGGAGGGAGGGAGGGAGGGGGGGCGGAGCCGGTGAAATGTTTT
CTCATCGGCAGCTTGTGCATAAAGGGGTAAATGAGTGCTTGGTGGG

Synonyms

Publications