EWM27348.1, cds3325 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM27348.1
Unique Name	cds3325
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002461.1:148024..148039 -
Alignment location	CM002461.1:147370..147776 -

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM27348.1
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_101810g1.2189.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:148024..148039 -
CM002461.1	supercontig	CM002461.1:147370..147776 -

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

[Close]

BLAST of EWM27348.1 vs. NCBI_GenBank
Match: gi|585109555|gb|EWM27348.1| (hypothetical protein Naga_101810g1 [Nannochloropsis gaditana])

HSP 1 Score: 264.618 bits (675), Expect = 2.713e-89
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0

Query:    1 MSAWWATSLPDTASLPPTFPSWTYPFSSLCPAPSVRPSTLRPLRSLARPKLGPMKTKRGRGRCRCWGGGREGSTEGGREGRWKLARALRDPRRCCEGGERGEGREGRREGGRGGGREGGREGGGAEPVKCFLIGSLCIKG 140
            MSAWWATSLPDTASLPPTFPSWTYPFSSLCPAPSVRPSTLRPLRSLARPKLGPMKTKRGRGRCRCWGGGREGSTEGGREGRWKLARALRDPRRCCEGGERGEGREGRREGGRGGGREGGREGGGAEPVKCFLIGSLCIKG
Sbjct:    1 MSAWWATSLPDTASLPPTFPSWTYPFSSLCPAPSVRPSTLRPLRSLARPKLGPMKTKRGRGRCRCWGGGREGSTEGGREGRWKLARALRDPRRCCEGGERGEGREGRREGGRGGGREGGREGGGAEPVKCFLIGSLCIKG 140

The following BLAST results are available for this feature:

BLAST of EWM27348.1 vs. NCBI_GenBank

BLAST of EWM27348.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585109555\|gb\|EWM27348.1\|	2.713e-89	100.00	hypothetical protein Naga_101810g1 [Nannochloropsi...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna3334	rna3334	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications