rna3325, rna3325 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3325
Unique Name	rna3325
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2106
Alignment location	CM002461.1:124904..126821 +

Link to JBrowse

Properties


Property Name	Value
Product	Protein of unknown function DUF962
Orig transcript id	gnl\|cribi\|Naga_100771g1.3518.mrna
Orig protein id	gnl\|cribi\|Naga_100771g1.3518
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:124904..126821 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100771g1	gene3201	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3325	rna3325-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27358.1	cds3316	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002461.1:124904..126821+
coding sequence from alignment at CM002461.1:124904..126821+

mRNA sequence

>rna3325 ID=rna3325|Name=rna3325|organism=Nannochloropsis gaditana|type=mRNA|length=2106bp
ATGCATACTGGCATGTTTGATCCGTCCAATCACATCACAGCCCCAAAAGT
ACCGCGAAGCTCTCCGCTCAGACCCTTACCAGTGGACATGCAATCCCATG
GAGGACTCCGAGGGGTGGCTGCTGTGTGGATCGTCATATTTCATTGCTTT
GGGGACCCCAGATATCATGCAGGCTGGGTGGTAGCGTTACAAGGATCGAG
CCTGATGCCTTTATTCTTTATGCTGTCCGGTTTCTCGTTGGCTGTGACAT
ATGGGCGCACGACATGGGCTGTGTCGTCCTTCACTTGGCCTTGGGGAGGC
AAGAATGAGCAGCAAGGTGCCAGTTCCTCGTCACAAAGCCACTCAATATG
TGTCGTCACTGGTATGGACAGGATGGAACAAGGCAACGAACTGCCGGAAA
CGACGACAGTCGCTACGTCCGTGCCTGCCTGCTTAGACCCCCCAACACCT
CTGCAACCCTTCTTTCCCACGCGCGATTTCTACCAGAACCGCATTGCCCG
GGTCATACCCGTATACTGGCTGTCCATCCTCATCTCCATTCCGTTGTGGC
TTCTGAACATTGCCGATTATCCTTTCTCCCTCCAAACCTTCCTCCCCTCC
CTGGCTACCAGCATCATCCCCGTCACCTCGCTCTTCTCGGCGTGGAACGA
GCATTACATCGCAGCCATCAACCCCGTCGGCTGGTTTATCACAACGCTTG
CCTTCTTCTGGCTGTTTTTCCCTGTCTGGCTCCCGCGTATGCAACGCTTA
TCGGACAGGGGGTTGCTCGGCGTGGTGGTCGTGGGGTATTGGCTACAACT
CTTTTTAATCCAAAGCCTTTATTCCGTCCTGCCCCTTTTTTTCCATTTCC
GCCCCTTCACCACCGCCACTATGAACCCTCTTTCCCGCTTCCCCCTCTTT
CTCATGGGCATGGCCGCAGGCTTGCTCTCCTTGCGGCATGCGTCTTCTGA
GAAAATTCCCGGAGGCCCCCACCGGACGCTACCCACCCCCCAGGCAGGTG
GCGCAACTCATTCGTACAACCCCCTTGCATGCAGTAAAGGCCAACACCCT
GGCAGGAAAGGATCGGAGATCATCATCAAGTCCCCTGTCAGGAGTCAAGA
GAAAGCCAATGTCCACATGCGCCCGCCCCCTGGCCCCCTGACCGGGGACA
CCTTAACGGCGGACGGTCTTTTTCCGACGGGGTTTAATTCCATCATAAAG
GCCGAAAACGGGCATGTGGAAACGTCCCCGGAAAAGGGCGACAGCACGGT
CTTTCCTTGGCCGGCCTGCGTCCTTTGCCTTCCCCTGCCAACGCCATGCG
CGGCGTCCCGCCCGCCTGTCAAGGATCATCCTCCTAGCCCCTCTCGTCCT
CCCCGTGGATCCACGCTGCACAGTGAACGAGCTCCGCCACCTCCTCTTCC
CACCGACCGAGGTATCCCCAGCACCATCAGCTCCTTTCCTCTTGCCCACG
TTTGCGACGAGCCTTCTCCCCGCCCCTCCCCCGGCCCCTCCCTTCTTCCC
TCCCTCCCCGAGCTCCTCCTCCTCCACTGGACACCCCCCTCCACGCCCAA
GGGTTGGGCGCTGGCGGCAAGCCAACACGCACTTGCCCTCCTACTTTGCA
CCCTCCTGGTCGCCGGCATCGATACGGGCTACCGGATTGTCACCCAAGGA
AGGCACACGATCGGTGCGCAAGTGTGGTATCAAGGGGTGGTAGTCATGGC
TCAATTGAACGTGGTGCTGGCCTTGACCAGGGATGAGGGCCGTTCCCATG
CCGCCCGCTTTCTCCGTATCCCCGTCTGCGCCTGGTTGGGTAGCATCTCC
ATGAATCTCTATTTATTGCATTATCCCCTGTTGGGCTACTTGGCCCTGGC
GCTGCATCCCTCCCACGTCCCGGCCTTATTAAGGTGTTTTCACCTGGGAA
GAGGCGGGAAGGAGGGCGACATGGAGGCGGAGGTGGAAGCAGAAAGAGTG
GTGCGTTGCCAGGCCTTGATCAAGGACGTGCGTGTATTGCCCTGGTGGTC
TGTATTGATCGTGGTGCCGGTGGCGATCGGATTGGCTGAAGGGGTGGGAC
GGTGGGTCGAGGCGCCTGCTCGACAGGCGTGGCGGAGGGGGAAGGGGAGG
GGGTAA

protein sequence of rna3325

>rna3325-protein ID=rna3325-protein|Name=rna3325|organism=Nannochloropsis gaditana|type=polypeptide|length=233bp
MAPKKAGLLDIEKQFTFYAAYHDNTVNKWIHIVCIWPLIFTGLMLLWTNA
GIVSQISLPSSLTNLSVQGVPLTLNWALLAACVYIAFYLSLEFENAKKMT
GLGIFAAALVAILYFVAGRLVALPPLHAAYGKQSVEITYRQAALATHGMC
WVAQFIGHGLFEGRAPALFTNLVQAFLMAPIFVLLEVVFLLGGKKKLHKS
IAARVQEEISAYKIQREISSGKGRVTRSKSKKA

mRNA from alignment at CM002461.1:124904..126821+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3325 ID=rna3325|Name=rna3325|organism=Nannochloropsis gaditana|type=mRNA|length=1918bp|location=Sequence derived from alignment at CM002461.1:124904..126821+ (Nannochloropsis gaditana)
ACCTTGAGACACAAACATACTTGGTCCATGCCATTAgtgctttcctctcc
ctttttatCCTCACATCATGCGTATTGAACTAAGAGACGTGCATTTTTAC
ACGCGCACAGGTTGCTCCGGTGATCGTGTAGTTCGAGATGGCACCCAAGA
AAGCAGGACTGCTTGATATTGAGAAGCAGGTACGTATCAAAGAGGCGGGG
CGCGAGTATCATGTATTGACGAATAACAGTCTGCACACCTCACAAATTGC
ACGATGTCTGTTCTATCCTCCGCGGTACCTTCATATTCTCTCGCATCCCA
CGACAGCAGTCTTGAATGTACAGTCGATACAACATGCTCATGTATTACCT
CCCTGAGAGTCTTCTTTGTGTCGTGATGCATTGAAATTTGTACATTCTCA
ATCCTTTTGATCCCCTCTTGCACATTCCTATACGACCTTCTCACCCTTTC
TCCAATTATCTACGCCCACAGTTCACCTTCTATGCGGCTTACCACGACAA
CACCGTCAATAAATGGATCCACATCGTCTGCATCTGGCCCTTGATATTCA
CCGGGCTTATGCTGCTTTGGACGAACGCCGGCATTGTTAGCCAGATTTCT
CTGCCTTCTTCGCTTACGAACCTTTCCGTTCAGGGCGTCCCTCTCACTTT
GAATTGGGCCCTGCTGGCCGCCTGCGTCTACATTGCCTTCTACTTATCCC
TTGAATTCGAGAACGCGAAGAAAATGACAGGCTTGGGAATCTTCGCGGTG
AGTGAGGCAGCGGGGTGAACGAACCACGGCAgtgcgagagggaggacggg
aggaagggaagctcGGAGAGAGCCTCCACacgggaagagaagaggaacga
TGACCTCTTCTGTGCCGGCGCTGTGATTCTGAAAGTCACGGAGGGAGAAT
GTGGGCACGGATCAAAGATCTCTCTCGGAGATTCCACCATACCAAGCCaa
ttcccctccttcccctccctccctcctcaggcgGCTCTCGTGGCCATCCT
CTACTTCGTCGCCGGGCGCTTGgtcgctctcccgcccctgcaTGCTGCCT
ACGGGAAGCAGAGTGTGGAGATAACGTATCGACAAGCGGCATTGGCCACC
CACGTAAGTTTTCCGTCCtcgttccttcccttttacatcatttctttccc
cccttcatGCTTTCCTTGCCgaatcctcctcttctctccctccacgctta
gcttccctccctcgcgcttgcccgccctcccgccttcctcctttcccttc
cctctgttTCAGGGTATGTGCTGGGTCGCTCAATTCATTGGCCACGGTCT
CTTTGAAGGAAgagctcccgccctcttcacCAATCTTGTCCAGGtggtcc
tctctccctccctccctcccttccttcctccctccctccctccctccctt
gtacACTTCCACCCgccattttctccctcccttgcctttcATTTTTGCCA
ATAAATTGACTTCcataccctccttcccctggcctcctccatcccaggCA
TTCCTCATGGCTCCCATATTCGTGTTGCTCGAGGTGGTGTTCTTGctagg
ggggaagaaaaagcttcacaaggtgaggaggggagggagggagggaagga
ggggaagagggagggatgagtgGAGGACGTAcagggaaatggaagatTTT
GGCGCATAAAGGGAAGACTGGTCCTCCTCACAAAAGCCTGGCACttcttt
tgcctccctcccctccctccctccctccctcccgccctcccgccctccct
ccctcccgtttttcccccccgccctgccaaTGTCTCTCCCCCCTGGGGGG
CCACAGTCTATCGCCGCCAGGGTCCAGGAGGAGATCAGCGCCTACAAGAT
TCAGCGAGAGATCTCGagcgggaaggggcgggtGACGCGGTCAAAGAGCA
AGAAGGCCTGAGGGTTGG

Coding sequence (CDS) from alignment at CM002461.1:124904..126821+

>rna3325 ID=rna3325|Name=rna3325|organism=Nannochloropsis gaditana|type=CDS|length=4212bp|location=Sequence derived from alignment at CM002461.1:124904..126821+ (Nannochloropsis gaditana)
ATGGCACCCAAGAAAGCAGGACTGCTTGATATTGAGAAGCAGTTCACCTT
CTATGCGGCTTACCACGACAACACCGTCAATAAATGGATCCACATCGTCT
GCATCTGGCCCTTGATATTCACCGGGCTTATGCTGCTTTGGACGAACGCC
GGCATTGTTAGCCAGATTTCTCTGCCTTCTTCGCTTACGAACCTTTCCGT
TCAGGGCGTCCCTCTCACTTTGAATTGGGCCCTGCTGGCCGCCTGCGTCT
ACATTGCCTTCTACTTATCCCTTGAATTCGAGAACGCGAAGAAAATGACA
GGCTTGGGAATCTTCGCGgcgGCTCTCGTGGCCATCCTCTACTTCGTCGC
CGGGCGCTTGgtcgctctcccgcccctgcaTGCTGCCTACGGGAAGCAGA
GTGTGGAGATAACGTATCGACAAGCGGCATTGGCCACCCACGGTATGTGC
TGGGTCGCTCAATTCATTGGCCACGGTCTCTTTGAAGGAAgagctcccgc
cctcttcacCAATCTTGTCCAGgCATTCCTCATGGCTCCCATATTCGTGT
TGCTCGAGGTGGTGTTCTTGctaggggggaagaaaaagcttcacaagTCT
ATCGCCGCCAGGGTCCAGGAGGAGATCAGCGCCTACAAGATTCAGCGAGA
GATCTCGagcgggaaggggcgggtGACGCGGTCAAAGAGCAAGAAGGCCT
GAATGGCACCCAAGAAAGCAGGACTGCTTGATATTGAGAAGCAGTTCACC
TTCTATGCGGCTTACCACGACAACACCGTCAATAAATGGATCCACATCGT
CTGCATCTGGCCCTTGATATTCACCGGGCTTATGCTGCTTTGGACGAACG
CCGGCATTGTTAGCCAGATTTCTCTGCCTTCTTCGCTTACGAACCTTTCC
GTTCAGGGCGTCCCTCTCACTTTGAATTGGGCCCTGCTGGCCGCCTGCGT
CTACATTGCCTTCTACTTATCCCTTGAATTCGAGAACGCGAAGAAAATGA
CAGGCTTGGGAATCTTCGCGgcgGCTCTCGTGGCCATCCTCTACTTCGTC
GCCGGGCGCTTGgtcgctctcccgcccctgcaTGCTGCCTACGGGAAGCA
GAGTGTGGAGATAACGTATCGACAAGCGGCATTGGCCACCCACGGTATGT
GCTGGGTCGCTCAATTCATTGGCCACGGTCTCTTTGAAGGAAgagctccc
gccctcttcacCAATCTTGTCCAGgCATTCCTCATGGCTCCCATATTCGT
GTTGCTCGAGGTGGTGTTCTTGctaggggggaagaaaaagcttcacaagT
CTATCGCCGCCAGGGTCCAGGAGGAGATCAGCGCCTACAAGATTCAGCGA
GAGATCTCGagcgggaaggggcgggtGACGCGGTCAAAGAGCAAGAAGGC
CTGAATGGCACCCAAGAAAGCAGGACTGCTTGATATTGAGAAGCAGTTCA
CCTTCTATGCGGCTTACCACGACAACACCGTCAATAAATGGATCCACATC
GTCTGCATCTGGCCCTTGATATTCACCGGGCTTATGCTGCTTTGGACGAA
CGCCGGCATTGTTAGCCAGATTTCTCTGCCTTCTTCGCTTACGAACCTTT
CCGTTCAGGGCGTCCCTCTCACTTTGAATTGGGCCCTGCTGGCCGCCTGC
GTCTACATTGCCTTCTACTTATCCCTTGAATTCGAGAACGCGAAGAAAAT
GACAGGCTTGGGAATCTTCGCGgcgGCTCTCGTGGCCATCCTCTACTTCG
TCGCCGGGCGCTTGgtcgctctcccgcccctgcaTGCTGCCTACGGGAAG
CAGAGTGTGGAGATAACGTATCGACAAGCGGCATTGGCCACCCACGGTAT
GTGCTGGGTCGCTCAATTCATTGGCCACGGTCTCTTTGAAGGAAgagctc
ccgccctcttcacCAATCTTGTCCAGgCATTCCTCATGGCTCCCATATTC
GTGTTGCTCGAGGTGGTGTTCTTGctaggggggaagaaaaagcttcacaa
gTCTATCGCCGCCAGGGTCCAGGAGGAGATCAGCGCCTACAAGATTCAGC
GAGAGATCTCGagcgggaaggggcgggtGACGCGGTCAAAGAGCAAGAAG
GCCTGAATGGCACCCAAGAAAGCAGGACTGCTTGATATTGAGAAGCAGTT
CACCTTCTATGCGGCTTACCACGACAACACCGTCAATAAATGGATCCACA
TCGTCTGCATCTGGCCCTTGATATTCACCGGGCTTATGCTGCTTTGGACG
AACGCCGGCATTGTTAGCCAGATTTCTCTGCCTTCTTCGCTTACGAACCT
TTCCGTTCAGGGCGTCCCTCTCACTTTGAATTGGGCCCTGCTGGCCGCCT
GCGTCTACATTGCCTTCTACTTATCCCTTGAATTCGAGAACGCGAAGAAA
ATGACAGGCTTGGGAATCTTCGCGgcgGCTCTCGTGGCCATCCTCTACTT
CGTCGCCGGGCGCTTGgtcgctctcccgcccctgcaTGCTGCCTACGGGA
AGCAGAGTGTGGAGATAACGTATCGACAAGCGGCATTGGCCACCCACGGT
ATGTGCTGGGTCGCTCAATTCATTGGCCACGGTCTCTTTGAAGGAAgagc
tcccgccctcttcacCAATCTTGTCCAGgCATTCCTCATGGCTCCCATAT
TCGTGTTGCTCGAGGTGGTGTTCTTGctaggggggaagaaaaagcttcac
aagTCTATCGCCGCCAGGGTCCAGGAGGAGATCAGCGCCTACAAGATTCA
GCGAGAGATCTCGagcgggaaggggcgggtGACGCGGTCAAAGAGCAAGA
AGGCCTGAATGGCACCCAAGAAAGCAGGACTGCTTGATATTGAGAAGCAG
TTCACCTTCTATGCGGCTTACCACGACAACACCGTCAATAAATGGATCCA
CATCGTCTGCATCTGGCCCTTGATATTCACCGGGCTTATGCTGCTTTGGA
CGAACGCCGGCATTGTTAGCCAGATTTCTCTGCCTTCTTCGCTTACGAAC
CTTTCCGTTCAGGGCGTCCCTCTCACTTTGAATTGGGCCCTGCTGGCCGC
CTGCGTCTACATTGCCTTCTACTTATCCCTTGAATTCGAGAACGCGAAGA
AAATGACAGGCTTGGGAATCTTCGCGgcgGCTCTCGTGGCCATCCTCTAC
TTCGTCGCCGGGCGCTTGgtcgctctcccgcccctgcaTGCTGCCTACGG
GAAGCAGAGTGTGGAGATAACGTATCGACAAGCGGCATTGGCCACCCACG
GTATGTGCTGGGTCGCTCAATTCATTGGCCACGGTCTCTTTGAAGGAAga
gctcccgccctcttcacCAATCTTGTCCAGgCATTCCTCATGGCTCCCAT
ATTCGTGTTGCTCGAGGTGGTGTTCTTGctaggggggaagaaaaagcttc
acaagTCTATCGCCGCCAGGGTCCAGGAGGAGATCAGCGCCTACAAGATT
CAGCGAGAGATCTCGagcgggaaggggcgggtGACGCGGTCAAAGAGCAA
GAAGGCCTGAATGGCACCCAAGAAAGCAGGACTGCTTGATATTGAGAAGC
AGTTCACCTTCTATGCGGCTTACCACGACAACACCGTCAATAAATGGATC
CACATCGTCTGCATCTGGCCCTTGATATTCACCGGGCTTATGCTGCTTTG
GACGAACGCCGGCATTGTTAGCCAGATTTCTCTGCCTTCTTCGCTTACGA
ACCTTTCCGTTCAGGGCGTCCCTCTCACTTTGAATTGGGCCCTGCTGGCC
GCCTGCGTCTACATTGCCTTCTACTTATCCCTTGAATTCGAGAACGCGAA
GAAAATGACAGGCTTGGGAATCTTCGCGgcgGCTCTCGTGGCCATCCTCT
ACTTCGTCGCCGGGCGCTTGgtcgctctcccgcccctgcaTGCTGCCTAC
GGGAAGCAGAGTGTGGAGATAACGTATCGACAAGCGGCATTGGCCACCCA
CGGTATGTGCTGGGTCGCTCAATTCATTGGCCACGGTCTCTTTGAAGGAA
gagctcccgccctcttcacCAATCTTGTCCAGgCATTCCTCATGGCTCCC
ATATTCGTGTTGCTCGAGGTGGTGTTCTTGctaggggggaagaaaaagct
tcacaagTCTATCGCCGCCAGGGTCCAGGAGGAGATCAGCGCCTACAAGA
TTCAGCGAGAGATCTCGagcgggaaggggcgggtGACGCGGTCAAAGAGC
AAGAAGGCCTGA

Synonyms

Publications