EWM27358.1, cds3316 (CDS) Nannochloropsis gaditana

Overview
NameEWM27358.1
Unique Namecds3316
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:125041..125082 +
Alignment locationCM002461.1:125375..125650 +
Alignment locationCM002461.1:125884..126006 +
Alignment locationCM002461.1:126166..126246 +
Alignment locationCM002461.1:126401..126475 +
Alignment locationCM002461.1:126710..126814 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27358.1
ProductProtein of unknown function DUF962
Orig transcript idgnl|cribi|Naga_100771g1.3518.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:125041..125082 +
CM002461.1supercontigCM002461.1:125375..125650 +
CM002461.1supercontigCM002461.1:125884..126006 +
CM002461.1supercontigCM002461.1:126166..126246 +
CM002461.1supercontigCM002461.1:126401..126475 +
CM002461.1supercontigCM002461.1:126710..126814 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR009305DUF962
Homology
BLAST of EWM27358.1 vs. NCBI_GenBank
Match: gi|585109573|gb|EWM27358.1| (Protein of unknown function DUF962 [Nannochloropsis gaditana])

HSP 1 Score: 474.552 bits (1220), Expect = 2.632e-169
Identity = 233/233 (100.00%), Postives = 233/233 (100.00%), Query Frame = 0
Query:    1 MAPKKAGLLDIEKQFTFYAAYHDNTVNKWIHIVCIWPLIFTGLMLLWTNAGIVSQISLPSSLTNLSVQGVPLTLNWALLAACVYIAFYLSLEFENAKKMTGLGIFAAALVAILYFVAGRLVALPPLHAAYGKQSVEITYRQAALATHGMCWVAQFIGHGLFEGRAPALFTNLVQAFLMAPIFVLLEVVFLLGGKKKLHKSIAARVQEEISAYKIQREISSGKGRVTRSKSKKA 233
            MAPKKAGLLDIEKQFTFYAAYHDNTVNKWIHIVCIWPLIFTGLMLLWTNAGIVSQISLPSSLTNLSVQGVPLTLNWALLAACVYIAFYLSLEFENAKKMTGLGIFAAALVAILYFVAGRLVALPPLHAAYGKQSVEITYRQAALATHGMCWVAQFIGHGLFEGRAPALFTNLVQAFLMAPIFVLLEVVFLLGGKKKLHKSIAARVQEEISAYKIQREISSGKGRVTRSKSKKA
Sbjct:    1 MAPKKAGLLDIEKQFTFYAAYHDNTVNKWIHIVCIWPLIFTGLMLLWTNAGIVSQISLPSSLTNLSVQGVPLTLNWALLAACVYIAFYLSLEFENAKKMTGLGIFAAALVAILYFVAGRLVALPPLHAAYGKQSVEITYRQAALATHGMCWVAQFIGHGLFEGRAPALFTNLVQAFLMAPIFVLLEVVFLLGGKKKLHKSIAARVQEEISAYKIQREISSGKGRVTRSKSKKA 233          
BLAST of EWM27358.1 vs. NCBI_GenBank
Match: gi|553194116|ref|XP_005855891.1| (hypothetical protein NGA_0557000, partial [Nannochloropsis gaditana CCMP526] >gi|422293167|gb|EKU20467.1| hypothetical protein NGA_0557000, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 300.827 bits (769), Expect = 1.534e-101
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 0
Query:    1 MAPKKAGLLDIEKQFTFYAAYHDNTVNKWIHIVCIWPLIFTGLMLLWTNAGIVSQISLPSSLTNLSVQGVPLTLNWALLAACVYIAFYLSLEFENAKKMTGLGIFAAALVAILYFVAGRLVALPPLHAAYGKQSVEITYRQAALATH 147
            MAPKKAGLLDIEKQFTFYAAYHDNTVNKWIHIVCIWPLIFTGLMLLWTNAGIVSQISLPSSLTNLSVQGVPLTLNWALLAACVYIAFYLSLEFENAKKMTGLGIFAAALVAILYFVAGRLVALPPLHAAYGKQSVEITYRQAALATH
Sbjct:    1 MAPKKAGLLDIEKQFTFYAAYHDNTVNKWIHIVCIWPLIFTGLMLLWTNAGIVSQISLPSSLTNLSVQGVPLTLNWALLAACVYIAFYLSLEFENAKKMTGLGIFAAALVAILYFVAGRLVALPPLHAAYGKQSVEITYRQAALATH 147          
BLAST of EWM27358.1 vs. NCBI_GenBank
Match: gi|695446256|ref|XP_009534435.1| (hypothetical protein PHYSODRAFT_305059 [Phytophthora sojae] >gi|348669752|gb|EGZ09574.1| hypothetical protein PHYSODRAFT_305059 [Phytophthora sojae])

HSP 1 Score: 144.436 bits (363), Expect = 1.222e-39
Identity = 80/213 (37.56%), Postives = 121/213 (56.81%), Query Frame = 0
Query:    6 AGLLDIEKQFTFYAAYHDNTVNKWIHIVCIWPLIFTGLMLLWTNAGIVSQISLPSSLTNLSVQGVPLTLNWALLAACVYIAFYLSLEFENAKKMTGLGIFAAALVAILYFVAGRLVALPPLHAAYGKQSVEITYRQAALATHGMCWVAQFIGHGLFEGRAPALFTNLVQAFLMAPIFVLLEVVFLLGGKKKLHKSIAARVQEEISAYKIQREI 218
            A   D+EKQ TFY +YHDN +N++IH+ CIWP+  +GLM+L     +    S  SSL      G    LN++ + A VY+A+Y++L+        G GI +A  V   YFVA             G  ++ +    AALA H   W+ QFIGHG+FE R PALF +L QA + AP+FVLLE++F LG + +L++ +  +V+  +  ++  + +
Sbjct:    5 ADRFDLEKQVTFYLSYHDNKMNQYIHLACIWPIFVSGLMILAHTQPLAETPSFVSSLP----YGEYAVLNYSAVMAAVYMAWYVALDVYAGS--LGAGIISACFVGANYFVAE------------GASALGVHSMHAALAVHATAWILQFIGHGVFERRKPALFDSLDQALITAPMFVLLEILFPLGYRPELYQRVMKQVRINVKNFQATKTL 199          
BLAST of EWM27358.1 vs. NCBI_GenBank
Match: gi|1214705287|gb|OWZ17009.1| (hypothetical protein PHMEG_0009114 [Phytophthora megakarya])

HSP 1 Score: 139.043 bits (349), Expect = 1.608e-37
Identity = 74/213 (34.74%), Postives = 122/213 (57.28%), Query Frame = 0
Query:    6 AGLLDIEKQFTFYAAYHDNTVNKWIHIVCIWPLIFTGLMLLWTNAGIVSQISLPSSLTNLSVQGVPLTLNWALLAACVYIAFYLSLEFENAKKMTGLGIFAAALVAILYFVAGRLVALPPLHAAYGKQSVEITYRQAALATHGMCWVAQFIGHGLFEGRAPALFTNLVQAFLMAPIFVLLEVVFLLGGKKKLHKSIAARVQEEISAYKIQREI 218
            A   D+EKQ TFY +YHDN +N++IH+ CIWP+  +GLM+L     +V   SL SSL      G  + LN++ + A +Y+ +Y++L+          G   AA++++ +  +   V         G  ++++     ALA H   W+ QFIGHG+FE R PALF +L QA + AP+FVLLE++F LG +  L++ +  +V+  +  ++  + +
Sbjct:    5 ADRFDLEKQVTFYLSYHDNKINQYIHLACIWPIFVSGLMILAHTQPLVETPSLLSSLP----YGEFVLLNYSAVMAGIYMLWYMALDIYA-------GTLGAAIISLCFVFSNYFVV-------EGASAMDVHSMHVALAIHATAWILQFIGHGVFERRKPALFDSLDQAIITAPMFVLLEILFPLGYRPDLYQHVMKQVRINVKNFQATKTL 199          
BLAST of EWM27358.1 vs. NCBI_GenBank
Match: gi|1061477523|gb|ODM95244.1| (hypothetical protein Ocin01_11427 [Orchesella cincta])

HSP 1 Score: 138.272 bits (347), Expect = 3.001e-37
Identity = 88/222 (39.64%), Postives = 126/222 (56.76%), Query Frame = 0
Query:    7 GLLDIEKQFTFYAAYHDNTVNKWIHIVCIWPLIFTGLMLLWTNAGIVSQISLPSSLTNLSVQGVPLTLNWALLAACVYIAFYLSLEFENAKKMTGLGIFAAALVAILYFVAGRLVALPPLHAAYGKQSVEITYR----QAALATHGMCWVAQFIGHGLFEGRAPALFTNLVQAFLMAPIFVLLEVVFLLGGKKKLHKSIAARVQEEISAYKIQREISSGKGR 224
            G+ D+E+QFTFYA+YH   VN+ IHIVC+WP+++T L+       I + IS P    N+           AL  A  Y A Y+ ++    KK   L    AAL+ ++  +  R   L          + EI+Y     Q A+  H +CW+AQF+GHG+FEGRAPAL  N+ QAF+MAP FVLLEV+F LG +K +   +   V++E++  K Q++I  GK R
Sbjct:    2 GITDLEEQFTFYASYHHAFVNQLIHIVCVWPILWTALVFT-QYIPIEAPISTPVHPANI-----------ALFTALFYAAVYVVMD----KKAGSL----AALLVLICLITSRRFYL----------TAEISYGVPAWQLAVLIHVVCWIAQFVGHGVFEGRAPALLDNVTQAFVMAPFFVLLEVLFHLGYRKDMQVKLWKNVEKELARLK-QKKI--GKSR 190          
BLAST of EWM27358.1 vs. NCBI_GenBank
Match: gi|674865757|emb|CDY67529.1| (BnaA08g31290D [Brassica napus])

HSP 1 Score: 138.272 bits (347), Expect = 3.775e-37
Identity = 87/223 (39.01%), Postives = 125/223 (56.05%), Query Frame = 0
Query:    7 GLLDIEKQFTFYAAYHDNTVNKWIHIVCIWPLIFTGLMLLWTNAGI--VSQISLPSSLTNLSVQGVPLTLNWALLAACVYIAFYLSLEFENAKKMTGLGIFAAALVAILYFVAGRLVA--LPPLHAAYGKQSVEITYRQAALATHGMCWVAQFIGHGLFEGRAPALFTNLVQAFLMAPIFVLLEVVFLLGGKKK---LHKSIAARVQEEISAYKIQREISSGK 222
            GLLD+EK F FY AYH N +N  IHI+ +WP++FT L+LL+  + I  +SQ+  P S+T   + GV L L+   +    Y  FY+ L+     K +G   F AAL+    +V   ++A  L P  A            +  LA+  +CW  QF+GHGLFE RAPAL  NL QAFLMAP FVLLE++ L+ G +        + A+V+  I  ++ +++I   K
Sbjct:    3 GLLDLEKHFAFYGAYHSNPINVVIHIIFVWPIVFTALLLLYPASPIYDLSQLGFPQSMT---LDGV-LRLDVGFVVTVAYALFYICLD-----KKSG---FVAALMCFACWVGSSVLADRLGPSLAV-----------KVGLASQLLCWTGQFLGHGLFEKRAPALLDNLAQAFLMAPFFVLLEILQLVFGYEPYPGFQARVNAKVESSIKEWREKKQIKKNK 202          
BLAST of EWM27358.1 vs. NCBI_GenBank
Match: gi|565495966|ref|XP_006305622.1| (hypothetical protein CARUB_v10010309mg [Capsella rubella] >gi|482574333|gb|EOA38520.1| hypothetical protein CARUB_v10010309mg [Capsella rubella])

HSP 1 Score: 138.272 bits (347), Expect = 4.595e-37
Identity = 84/219 (38.36%), Postives = 124/219 (56.62%), Query Frame = 0
Query:    4 KKAGLLDIEKQFTFYAAYHDNTVNKWIHIVCIWPLIFTGLMLLWTNAGIV--SQISLPSSLTNLSVQGVPLTLNWALLAACVYIAFYLSLEFENAKKMTGLGIFAAALVAILYFVAGRLVALPPLHAAYGKQSVEITYRQAALATHGMCWVAQFIGHGLFEGRAPALFTNLVQAFLMAPIFVLLEVVFLLGGKKK---LHKSIAARVQEEISAYKIQRE 217
            +  GLLD+EK F FY AYH N +N  IHI+ +WP++FT L+LL +   I   SQ+ L  SLT   + GV L  N   +   VY  FY+ L+     K +G   F AAL+    +V    +A+        +    ++++   LA+  +CW  QF+GHG+FE RAPAL  NL+QAFLMAP FVLLEV+  + G +        + A+V+ +I  Y+ +++
Sbjct:    3 RMMGLLDLEKHFAFYGAYHSNPINIVIHIIFVWPIVFTALLLLHSTTPIFDPSQLGLSQSLT---LDGV-LRFNLGFMFTLVYALFYICLD-----KKSG---FVAALMCFSCWVGSSFLAV--------RLGASLSFK-VGLASQLLCWTGQFVGHGVFEKRAPALLDNLLQAFLMAPFFVLLEVLQSIFGYEPYPGFQARVNAKVENDIKEYRAKKQ 200          
BLAST of EWM27358.1 vs. NCBI_GenBank
Match: gi|1040880670|ref|XP_017250180.1| (PREDICTED: uncharacterized endoplasmic reticulum membrane protein YGL010W [Daucus carota subsp. sativus])

HSP 1 Score: 137.887 bits (346), Expect = 4.720e-37
Identity = 84/218 (38.53%), Postives = 118/218 (54.13%), Query Frame = 0
Query:    7 GLLDIEKQFTFYAAYHDNTVNKWIHIVCIWPLIFTGLMLLWTNAGIVSQISLPSSLTNLSVQGVPLTLNWALLAACVYIAFYLSLEFE----NAKKMTGLGIFAAALVAILYF-VAGRLVALPPLHAAYGKQSVEITYRQAALATHGMCWVAQFIGHGLFEGRAPALFTNLVQAFLMAPIFVLLEVVFLLGGKKK--LHKSIAARVQEEISAYKIQRE 217
            GL D+EK F FY +YH N+VN +IH + +WP+ FT L+L +    ++S        + +   G PL  N+  L   VY  FY+ L+F      A    G  +FA+   +IL F +A ++V                      LA   +CW AQFIGHG+FE RAPALF NLVQAFLMAP FVLLE++ LL  +     HK++ AR++  I  +K + +
Sbjct:    2 GLFDLEKHFAFYGSYHHNSVNIFIHTLFVWPIFFTALILCYFTPPLIS-------FSKILFLGHPLIFNFGFLLTVVYGLFYIGLDFRAGVLGAIMCFGCWVFASVFASILGFSLAWKVV----------------------LAAQIICWTAQFIGHGVFEKRAPALFDNLVQAFLMAPFFVLLEILMLLHYEPYPGFHKAVEARIEALIQEWKDKNK 190          
BLAST of EWM27358.1 vs. NCBI_GenBank
Match: gi|922545698|ref|XP_013600635.1| (PREDICTED: uncharacterized endoplasmic reticulum membrane protein C16E8.02 [Brassica oleracea var. oleracea])

HSP 1 Score: 137.502 bits (345), Expect = 6.679e-37
Identity = 87/219 (39.73%), Postives = 124/219 (56.62%), Query Frame = 0
Query:    7 GLLDIEKQFTFYAAYHDNTVNKWIHIVCIWPLIFTGLMLLWTNAGI--VSQISLPSSLTNLSVQGVPLTLNWALLAACVYIAFYLSLEFENAKKMTGLGIFAAALVAILYFVAGRLVA--LPPLHAAYGKQSVEITYRQAALATHGMCWVAQFIGHGLFEGRAPALFTNLVQAFLMAPIFVLLEVVFLLGGKKK---LHKSIAARVQEEISAYKIQREI 218
            GLLD+EK F FY AYH N +N  IHI+ +WP++FT L+LL+  + I  +SQ+  P S+T   + GV L LN   +    Y  FY+ L+     K +G   F AAL+    +V   ++A  L P  A            +  LA+  +CW  QF+GHGLFE RAPAL  NL QAFLMAP FVLLE++ L+ G +        + A+V+  I  ++ +++I
Sbjct:    3 GLLDLEKHFAFYGAYHSNPINIVIHIIFVWPIVFTALLLLYPASPIYDLSQLGFPQSMT---LDGV-LRLNVGFVVTVAYALFYICLD-----KKSG---FVAALMCFACWVGSSVLADRLGPSLAV-----------KVGLASQLLCWTGQFLGHGLFEKRAPALLDNLAQAFLMAPFFVLLEILQLVFGYEPYPGFQARVNAKVESSIKEWREKKQI 198          
BLAST of EWM27358.1 vs. NCBI_GenBank
Match: gi|913779296|emb|CRK25239.1| (hypothetical protein BN1708_014194 [Verticillium longisporum] >gi|913845806|emb|CRK27306.1| hypothetical protein BN1723_003477 [Verticillium longisporum])

HSP 1 Score: 137.117 bits (344), Expect = 9.215e-37
Identity = 92/220 (41.82%), Postives = 118/220 (53.64%), Query Frame = 0
Query:    9 LDIEKQFTFYAAYHDNTVNKWIHIVCIWPLIFTGLMLLWTNAGIVSQISLPSSLTNLSVQGVPLTLNWALLAACVYIAFYLSLEFENAKKMTGLGIFAAALVAILYFVAGRLVALPPLH-AAYGKQ---SVEITYRQAALATHGMCWVAQFIGHGLFEGRAPALFTNLVQAFLMAPIFVLLEVVFLLGGKKKLHKSIAARVQEEISAYKIQREISSGKGR 224
            LD+EK  TFY AYH N+VN  IH+ C+ PLI     LL TN G +  I LPS LT        L LN   LAA  + A Y+ LE                       VAG L+A+  L   AYG         T  QAAL TH +CW+ QFIGHG FE RAPAL  NLVQA  +AP+FV LE +FLLG +++L   +   V++EI+ +K  + + +  G+
Sbjct:    3 LDLEKHLTFYGAYHHNSVNIAIHMCCV-PLILYSGFLLATNTGTL--IPLPSWLT-----APYLELNLGTLAAITWGALYVLLEP----------------------VAGTLLAIISLAVTAYGNSLRIDNPTTTNQAALITHVVCWIFQFIGHGAFEKRAPALLDNLVQAIFLAPLFVWLEFLFLLGYRQELKARVDKAVEKEIAKFKAAQAVDAKSGK 192          
The following BLAST results are available for this feature:
BLAST of EWM27358.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109573|gb|EWM27358.1|2.632e-169100.00Protein of unknown function DUF962 [Nannochloropsi... [more]
gi|553194116|ref|XP_005855891.1|1.534e-101100.00hypothetical protein NGA_0557000, partial [Nannoch... [more]
gi|695446256|ref|XP_009534435.1|1.222e-3937.56hypothetical protein PHYSODRAFT_305059 [Phytophtho... [more]
gi|1214705287|gb|OWZ17009.1|1.608e-3734.74hypothetical protein PHMEG_0009114 [Phytophthora m... [more]
gi|1061477523|gb|ODM95244.1|3.001e-3739.64hypothetical protein Ocin01_11427 [Orchesella cinc... [more]
gi|674865757|emb|CDY67529.1|3.775e-3739.01BnaA08g31290D [Brassica napus][more]
gi|565495966|ref|XP_006305622.1|4.595e-3738.36hypothetical protein CARUB_v10010309mg [Capsella r... [more]
gi|1040880670|ref|XP_017250180.1|4.720e-3738.53PREDICTED: uncharacterized endoplasmic reticulum m... [more]
gi|922545698|ref|XP_013600635.1|6.679e-3739.73PREDICTED: uncharacterized endoplasmic reticulum m... [more]
gi|913779296|emb|CRK25239.1|9.215e-3741.82hypothetical protein BN1708_014194 [Verticillium l... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3325rna3325Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications