rna3321, rna3321 (mRNA) Nannochloropsis gaditana

Overview
Namerna3321
Unique Namerna3321
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1242
Alignment locationCM002461.1:117929..119202 +

Link to JBrowse

Properties
Property NameValue
Product3-oxoacid transferase 1
Orig transcript idgnl|cribi|Naga_101253g2.10009.mrna
Orig protein idgnl|cribi|Naga_101253g2.10009
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:117929..119202 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101253g2gene3197Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3321rna3321-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27361.1cds3312Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3321 ID=rna3321|Name=rna3321|organism=Nannochloropsis gaditana|type=mRNA|length=1242bp
ATGTTTCCTTCCGTCACTTGTCCTATCCTCCGTCGAGGCCGTCGACCTGT
GACATGCCTGTACATGACCACCAAGCGCGCTTTGGCGAATAAAGTGTACG
AGTCTGCCGCTGAAGCAATTCAAGACATCAAAGACGGAAGCAAGCTTTGC
GTGGGAGGCTTTGGATTGTGTGGTATCCCGGAGAATTTAATCGCCGCACT
CGTCCAGAAGGGCACGAAAGACCTGACGTGCGTCTCCAACAATGCCGGCG
TGGACAATTTTGGCTTGGGGCTGTTGCTTCGGTCGAAACAAGTAAAGAGG
ATGATCTCGTCTTACGTGGGAGAGAACAAGGAATTCGAGCGCCAATATTT
ATCGGGGGAATTAGAGGTGGAACTCACACCCCAAGGCTCGCTGGCTGAGA
GGCTCCGTGCAGGGGGAGCCGGCATTCCTGCGTTTTATACTCCCACCGCG
TACGGCACCCTGGTCGAAAAAGGGGGGTTTCCCATCAAATTGAATCCAGA
TGGTAGCACAGCGATTGGGAGCCAGCCGCGGGAGACCCGTAAATTCCAGG
GCCGTAATTACGTCATGGAGGAAGCCATCACGGGGGATTTCAGTCTCGTG
AAAGGGTGGAAGGCGGACACCAAAGGCAACGTCATCTTTCGTGGCACGGC
TCGGAACTTCAATCCCGACGCGGCCCGGGCCGGGAAGGTCTGCATTGTTG
AAGTTGAGGATTTGCTTCAACCTGGCGATCTTCACCCGGACGAGGTTCAT
CTTCCGGGTATCTATGTCCATCGGATCGTCAAAGGCCCTCACCACGAGAA
ACGTATCGAACGGCTTACAGTCACCAAGAAAGGAAGCAAAGAGAGCCAGG
GTGGCAAATTGAACCCTGCTCGAGAGCGAATCGTGAAACGCGCGGCCTTA
GAATTCGAAGACGGCATGTACGTCAATCTAGGGATCGGCATCCCAGTACT
CGCCAGCAACTATCTGCCCGAAGGCGTCTCTATCGAGCTCCAGAGTGAGA
ACGGCCTCCTCGGCATGGGCCCCTACCCGGAGGTACTTACTTTCCCTCTT
GCCCTTCCTTCATCCCCGTCCACACTTGTCCACTCATTTGATTTATCCCT
CTGTCTATGTTCAACCCCGTCTCGGCTCCTTCCCCTCCCTCCCGCTACAC
CCCTTTCTCCTTCGCTCTCTCCATCCCGTCCTCCCTCCCTCACCCTCGCA
ACGCACCTCTTCGCTTCTCTAGGAGGGGACACACGATCCTGA
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protein sequence of rna3321

>rna3321-protein ID=rna3321-protein|Name=rna3321|organism=Nannochloropsis gaditana|type=polypeptide|length=84bp
MGGAMDLVGSGNRVVVTMEHTAKGDSKKILKSCTLPLTGPKVVDRIITEL
CVFDVDKVRAIFPHSLHSRGFSVVFRNAFRSIWL
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mRNA from alignment at CM002461.1:117929..119202+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3321 ID=rna3321|Name=rna3321|organism=Nannochloropsis gaditana|type=mRNA|length=1274bp|location=Sequence derived from alignment at CM002461.1:117929..119202+ (Nannochloropsis gaditana)
tctttttctccccttgaCTGCTTTGTGATTCATCCCCACTGCCCTTCAAC
CTATCTCAAGCACATTACCATGAGAAccatctctcccccctccaccatcc
ttctcccgccctcccttcctccccccctcaggCATGGGAGGCGCCATGGA
TTTGGTCGGAAGTGGGAATCGGGTGGTCGTCACCATGGAGCACACCGCCA
AGGGTGATAGCAAGAAGATCTTGAAGAGCTGCACGCTGCCCTTGACTGGG
CCCAAGgtgcgagagggagggcgggaggaagggagggaaagggacgtGGT
ATTGCTGGGCTGTCAACATTTCTTCTAAAAGCTCTTCACGGCGAACAGGT
GGTGGATAGGATCATAACAGAGCTCTGTGTCTTCGATGTCGACAAggttc
gcgccattttcccccactcccttcaCTCCCGGGGCTTCTCTGTTGTCTTC
CGTAATGCCTTCCGATCTATTTGGCTGTAATACGCGCAATTGATAAGGAT
CTTggtcctccttttttgttCCTTATCCCTCGCTTTACCTATACGTCTTC
GATCGTTGATTTCTCTGTCTCATTCCCTCCAATATAGCCGTTttattctt
tctcctccgcccccttcgttccctcctcgctcacttCCTCGTGCGCCCTC
GTTTTCGTgtccccgcttccttcctacaTCACGCAATTTAAAAAGTCTCT
TGGCATCTACTTTAAGATCTTCGAttcattcctcccctcccttcctctct
cttctcccgtATGTCTTAGGCCAAGGGCGAATTGGTCCTGACGGAGATCT
TTCCAGGGGTGACTGTCGACGAGATACGCGCCAAGACCGACGCCGAGTTC
AGGGAGGCGAAAGGAGGACTAAAAGTGGTCCAATTGTAAAAAAAGGGGGA
GTGGGAAATGGGGGGCTCGACTGGGGTGTCAGCTGCTGGTGGGAGGGTAA
AGAAAtgggaagaagcagagaaaTTTGGGGGAGAAGTAAGGCggaagagg
caaaggagTGGAGACCTCGCGTAACAGGGCGACCTGTAAATGTAGTGGAG
GAAAAACCGATCGTATTTTTACAAAGAAATAAATACACAGAGGCTTAGCG
CTGATGTGTCCTAacgaagaaggagcgagagaaagagagcgcGACATGTA
CAATACCTTCGGTATCGACTTCTTCGGACAAAATTAAAAGTCAATGGGTC
ATTCCTGATACGAGAATGTCGATGTGACTGACAAGAACCTCTGAAGCCAG
AAGATGTTTAATCAAAACGTCCCT
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Coding sequence (CDS) from alignment at CM002461.1:117929..119202+

>rna3321 ID=rna3321|Name=rna3321|organism=Nannochloropsis gaditana|type=CDS|length=510bp|location=Sequence derived from alignment at CM002461.1:117929..119202+ (Nannochloropsis gaditana)
ATGGGAGGCGCCATGGATTTGGTCGGAAGTGGGAATCGGGTGGTCGTCAC
CATGGAGCACACCGCCAAGGGTGATAGCAAGAAGATCTTGAAGAGCTGCA
CGCTGCCCTTGACTGGGCCCAAGGTGGTGGATAGGATCATAACAGAGCTC
TGTGTCTTCGATGTCGACAAggttcgcgccattttcccccactcccttca
CTCCCGGGGCTTCTCTGTTGTCTTCCGTAATGCCTTCCGATCTATTTGGC
TGTAAATGGGAGGCGCCATGGATTTGGTCGGAAGTGGGAATCGGGTGGTC
GTCACCATGGAGCACACCGCCAAGGGTGATAGCAAGAAGATCTTGAAGAG
CTGCACGCTGCCCTTGACTGGGCCCAAGGTGGTGGATAGGATCATAACAG
AGCTCTGTGTCTTCGATGTCGACAAggttcgcgccattttcccccactcc
cttcaCTCCCGGGGCTTCTCTGTTGTCTTCCGTAATGCCTTCCGATCTAT
TTGGCTGTAA
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Synonyms
Publications