EWM27361.1, cds3312 (CDS) Nannochloropsis gaditana

Overview
NameEWM27361.1
Unique Namecds3312
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:118062..118184 +
Alignment locationCM002461.1:118277..118408 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27361.1
Product3-oxoacid transferase 1
Orig transcript idgnl|cribi|Naga_101253g2.10009.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:118062..118184 +
CM002461.1supercontigCM002461.1:118277..118408 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0008410CoA-transferase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005739mitochondrion
Vocabulary: Biological Process
TermDefinition
GO:0009056catabolic process
GO:0006091generation of precursor metabolites and energy
GO:0008152metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR004165CoA_trans_fam_I
Homology
BLAST of EWM27361.1 vs. NCBI_GenBank
Match: gi|585109577|gb|EWM27361.1| (3-oxoacid transferase 1 [Nannochloropsis gaditana])

HSP 1 Score: 172.555 bits (436), Expect = 1.316e-54
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0
Query:    1 MGGAMDLVGSGNRVVVTMEHTAKGDSKKILKSCTLPLTGPKVVDRIITELCVFDVDKVRAIFPHSLHSRGFSVVFRNAFRSIWL 84
            MGGAMDLVGSGNRVVVTMEHTAKGDSKKILKSCTLPLTGPKVVDRIITELCVFDVDKVRAIFPHSLHSRGFSVVFRNAFRSIWL
Sbjct:    1 MGGAMDLVGSGNRVVVTMEHTAKGDSKKILKSCTLPLTGPKVVDRIITELCVFDVDKVRAIFPHSLHSRGFSVVFRNAFRSIWL 84          
BLAST of EWM27361.1 vs. NCBI_GenBank
Match: gi|567966902|gb|ETK92093.1| (hypothetical protein L915_04454 [Phytophthora parasitica] >gi|567995335|gb|ETL45473.1| hypothetical protein L916_04424 [Phytophthora parasitica])

HSP 1 Score: 92.8189 bits (229), Expect = 1.425e-22
Identity = 46/55 (83.64%), Postives = 49/55 (89.09%), Query Frame = 0
Query:    1 MGGAMDLVGSGNRVVVTMEHTAKGDSKKILKSCTLPLTGPKVVDRIITELCVFDV 55
            MGGAMDLVGSGNRVVVTMEH AKG +KKILKSC+LPLTG  VV+ IITEL VFDV
Sbjct:   36 MGGAMDLVGSGNRVVVTMEHNAKGGAKKILKSCSLPLTGKSVVNTIITELGVFDV 90          
BLAST of EWM27361.1 vs. NCBI_GenBank
Match: gi|290995757|ref|XP_002680449.1| (coenzyme A transferase family protein [Naegleria gruberi] >gi|284094070|gb|EFC47705.1| coenzyme A transferase family protein [Naegleria gruberi])

HSP 1 Score: 96.6709 bits (239), Expect = 1.370e-21
Identity = 46/55 (83.64%), Postives = 51/55 (92.73%), Query Frame = 0
Query:    1 MGGAMDLVGSGNRVVVTMEHTAKGDSKKILKSCTLPLTGPKVVDRIITELCVFDV 55
            MGGAMDLV SG+RVVVTMEHTAKG+S KILKSC+LPLTG +VV+RIITEL VFDV
Sbjct:  421 MGGAMDLVSSGSRVVVTMEHTAKGNSPKILKSCSLPLTGKQVVNRIITELAVFDV 475          
BLAST of EWM27361.1 vs. NCBI_GenBank
Match: gi|1214695640|gb|OWZ09372.1| (Succinyl CoA transferase [Phytophthora megakarya])

HSP 1 Score: 95.1301 bits (235), Expect = 4.278e-21
Identity = 46/55 (83.64%), Postives = 49/55 (89.09%), Query Frame = 0
Query:    1 MGGAMDLVGSGNRVVVTMEHTAKGDSKKILKSCTLPLTGPKVVDRIITELCVFDV 55
            MGGAMDLVGSGNRVVVTMEH AKG +KKILKSC+LPLTG  VV+ IITEL VFDV
Sbjct:  412 MGGAMDLVGSGNRVVVTMEHNAKGGAKKILKSCSLPLTGKNVVNTIITELGVFDV 466          
BLAST of EWM27361.1 vs. NCBI_GenBank
Match: gi|570992414|gb|ETP49920.1| (hypothetical protein F442_04631 [Phytophthora parasitica P10297])

HSP 1 Score: 95.1301 bits (235), Expect = 4.477e-21
Identity = 46/55 (83.64%), Postives = 49/55 (89.09%), Query Frame = 0
Query:    1 MGGAMDLVGSGNRVVVTMEHTAKGDSKKILKSCTLPLTGPKVVDRIITELCVFDV 55
            MGGAMDLVGSGNRVVVTMEH AKG +KKILKSC+LPLTG  VV+ IITEL VFDV
Sbjct:  407 MGGAMDLVGSGNRVVVTMEHNAKGGAKKILKSCSLPLTGKSVVNTIITELGVFDV 461          
BLAST of EWM27361.1 vs. NCBI_GenBank
Match: gi|675185943|ref|XP_008901856.1| (hypothetical protein PPTG_08876 [Phytophthora parasitica INRA-310] >gi|566029304|gb|ETI52215.1| hypothetical protein F443_04582 [Phytophthora parasitica P1569] >gi|568024627|gb|ETL98657.1| hypothetical protein L917_04296 [Phytophthora parasitica] >gi|568055091|gb|ETM51851.1| hypothetical protein L914_04399 [Phytophthora parasitica] >gi|568098107|gb|ETN12842.1| hypothetical protein PPTG_08876 [Phytophthora parasitica INRA-310] >gi|570333030|gb|ETO80978.1| hypothetical protein F444_04612 [Phytophthora parasitica P1976] >gi|570957053|gb|ETP22032.1| hypothetical protein F441_04557 [Phytophthora parasitica CJ01A1] >gi|970638380|gb|KUF81917.1| succinyl-CoA:3-ketoacid coenzyme A transferase [Phytophthora nicotianae])

HSP 1 Score: 95.1301 bits (235), Expect = 4.704e-21
Identity = 46/55 (83.64%), Postives = 49/55 (89.09%), Query Frame = 0
Query:    1 MGGAMDLVGSGNRVVVTMEHTAKGDSKKILKSCTLPLTGPKVVDRIITELCVFDV 55
            MGGAMDLVGSGNRVVVTMEH AKG +KKILKSC+LPLTG  VV+ IITEL VFDV
Sbjct:  407 MGGAMDLVGSGNRVVVTMEHNAKGGAKKILKSCSLPLTGKSVVNTIITELGVFDV 461          
BLAST of EWM27361.1 vs. NCBI_GenBank
Match: gi|1173949726|gb|OQR97732.1| (succinyl CoA transferase [Achlya hypogyna])

HSP 1 Score: 95.1301 bits (235), Expect = 4.724e-21
Identity = 45/54 (83.33%), Postives = 48/54 (88.89%), Query Frame = 0
Query:    1 MGGAMDLVGSGNRVVVTMEHTAKGDSKKILKSCTLPLTGPKVVDRIITELCVFD 54
            MGGAMDLVGSGNRVVVTMEH AK  S KILKSC+LPLTG +VV+RIITEL VFD
Sbjct:  369 MGGAMDLVGSGNRVVVTMEHNAKNGSAKILKSCSLPLTGKQVVNRIITELAVFD 422          
BLAST of EWM27361.1 vs. NCBI_GenBank
Match: gi|673035744|ref|XP_008871833.1| (hypothetical protein, variant [Aphanomyces invadans] >gi|574472272|gb|ETV99277.1| hypothetical protein, variant [Aphanomyces invadans])

HSP 1 Score: 94.7449 bits (234), Expect = 5.201e-21
Identity = 49/73 (67.12%), Postives = 56/73 (76.71%), Query Frame = 0
Query:    1 MGGAMDLVGSGNRVVVTMEHTAKGDSKKILKSCTLPLTGPKVVDRIITELCVFDVDKVRAIFPHSLHSRGFSV 73
            MGGAMDLVGSGNRVVVTMEH AK  S KILKSC LPLTG +VV+RIITEL VFDV + + +     H+ G +V
Sbjct:  405 MGGAMDLVGSGNRVVVTMEHNAKNGSAKILKSCKLPLTGKQVVNRIITELAVFDVIQGKLVLIE--HAPGVTV 475          
BLAST of EWM27361.1 vs. NCBI_GenBank
Match: gi|673035742|ref|XP_008871832.1| (hypothetical protein H310_08015 [Aphanomyces invadans] >gi|574472271|gb|ETV99276.1| hypothetical protein H310_08015 [Aphanomyces invadans])

HSP 1 Score: 94.7449 bits (234), Expect = 5.714e-21
Identity = 49/73 (67.12%), Postives = 56/73 (76.71%), Query Frame = 0
Query:    1 MGGAMDLVGSGNRVVVTMEHTAKGDSKKILKSCTLPLTGPKVVDRIITELCVFDVDKVRAIFPHSLHSRGFSV 73
            MGGAMDLVGSGNRVVVTMEH AK  S KILKSC LPLTG +VV+RIITEL VFDV + + +     H+ G +V
Sbjct:  422 MGGAMDLVGSGNRVVVTMEHNAKNGSAKILKSCKLPLTGKQVVNRIITELAVFDVIQGKLVLIE--HAPGVTV 492          
BLAST of EWM27361.1 vs. NCBI_GenBank
Match: gi|695401361|ref|XP_009522748.1| (hypothetical protein PHYSODRAFT_350484 [Phytophthora sojae] >gi|348680215|gb|EGZ20031.1| hypothetical protein PHYSODRAFT_350484 [Phytophthora sojae])

HSP 1 Score: 94.7449 bits (234), Expect = 6.304e-21
Identity = 46/55 (83.64%), Postives = 49/55 (89.09%), Query Frame = 0
Query:    1 MGGAMDLVGSGNRVVVTMEHTAKGDSKKILKSCTLPLTGPKVVDRIITELCVFDV 55
            MGGAMDLVGSGNRVVVTMEH AKG +KKILKSC+LPLTG  VV+ IITEL VFDV
Sbjct:  409 MGGAMDLVGSGNRVVVTMEHNAKGGAKKILKSCSLPLTGKSVVNTIITELGVFDV 463          
The following BLAST results are available for this feature:
BLAST of EWM27361.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109577|gb|EWM27361.1|1.316e-54100.003-oxoacid transferase 1 [Nannochloropsis gaditana][more]
gi|567966902|gb|ETK92093.1|1.425e-2283.64hypothetical protein L915_04454 [Phytophthora para... [more]
gi|290995757|ref|XP_002680449.1|1.370e-2183.64coenzyme A transferase family protein [Naegleria g... [more]
gi|1214695640|gb|OWZ09372.1|4.278e-2183.64Succinyl CoA transferase [Phytophthora megakarya][more]
gi|570992414|gb|ETP49920.1|4.477e-2183.64hypothetical protein F442_04631 [Phytophthora para... [more]
gi|675185943|ref|XP_008901856.1|4.704e-2183.64hypothetical protein PPTG_08876 [Phytophthora para... [more]
gi|1173949726|gb|OQR97732.1|4.724e-2183.33succinyl CoA transferase [Achlya hypogyna][more]
gi|673035744|ref|XP_008871833.1|5.201e-2167.12hypothetical protein, variant [Aphanomyces invadan... [more]
gi|673035742|ref|XP_008871832.1|5.714e-2167.12hypothetical protein H310_08015 [Aphanomyces invad... [more]
gi|695401361|ref|XP_009522748.1|6.304e-2183.64hypothetical protein PHYSODRAFT_350484 [Phytophtho... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3321rna3321Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications