rna3319, rna3319 (mRNA) Nannochloropsis gaditana

Overview
Namerna3319
Unique Namerna3319
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length204
Alignment locationCM002461.1:112170..113927 -

Link to JBrowse

Properties
Property NameValue
Productperoxiredoxin q
Orig transcript idgnl|cribi|Naga_100584g4.8932.mrna
Orig protein idgnl|cribi|Naga_100584g4.8932
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:112170..113927 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100584g4gene3195Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3319rna3319-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27365.1cds3310Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3319 ID=rna3319|Name=rna3319|organism=Nannochloropsis gaditana|type=mRNA|length=204bp
ATGGAGGAGGATGGAGGGCAGTTCACCGGCTCCAACATAAGAGGTGATAG
CGGAAGGACATGTGGATGTGTGATATATAGGAGGATGGAACCGCCAAGAG
TCCAAAGAGACGAGGGAAGACAGCATCAGAGACAACTAAGAAAAGGAGGT
GGTGTCATTCAAGTGCACGGACTCGAGGTTATTCACGTGTGCCGTGTAAT
TTGA
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protein sequence of rna3319

>rna3319-protein ID=rna3319-protein|Name=rna3319|organism=Nannochloropsis gaditana|type=polypeptide|length=180bp
MRIISVLALSLVMAAQAFMPSNGPSMGRSRGVMNMLKVGDAAPDFALKDQ
NNKVVKLSTFKGKKEVVLFFYPKDDTPGCTKEAKAFSAALGDFKKKGAEV
FGISSDEDHTAFVDKYGLQMQLLSDVGGATRKAYQVPSSLFGALDGRVTY
VIGKDQKIRLIYDNQFAPESHVEKSLGTLA
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mRNA from alignment at CM002461.1:112170..113927-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3319 ID=rna3319|Name=rna3319|organism=Nannochloropsis gaditana|type=mRNA|length=1758bp|location=Sequence derived from alignment at CM002461.1:112170..113927- (Nannochloropsis gaditana)
CCAGTCAAACTTTGAACAAGAACAATGCGTATTATTTCCGTCCTAGCCCT
CTCTCTGGTGATGGCCGCTCAGGCCTTCATGCCCTCGAATGGACCGTCAA
TGGGTCGCTCTCGAGGCGTGATGAACATGCTCAAGGTATGTTGGAGTGAT
AAGTTACGCGTGAAGGTTGTCGTCTGACGTGAATCAGTGACCGAAATAGT
GAATTGCATCCCGTGATAGAGGCGAAATGATGGTAGAAAAGCTTTACATG
AGTGTTTTGAAAACACGCTCGTCTATCTGCTGTTCTGGCGTTACCCTTGT
CCAGAAATTCAGACATCTAATGCGAGAGGCTTACCGAGCGTGGAAACTAT
CATCATCATCATTATCATTGCCATCACCAACACTCGTTATAAGCATATGA
TCATCATAAACATTATGACGGAGGAAAATTCTCTCACCATAATAGTTTTT
CCTTGATTAGGTGGGCGACGCAGCGCCTGACTTCGCCCTCAAGGACCAGA
ACAACAAGGTAGTGAAGCTATCCACTTTCAAGGGAAAGAAGGAGGTTGTC
CTTTTCTTCTACCCCAAAGACGACACACCCGGGTGCACAAAAGGTGAGTA
GACACATCCAGACGAGGGGGTAACCTGGGCAGAGGAGAGGGGTAAAGAAG
ACGGATGCCTGGAGGCGGGATGGTAGGGTCCAGTGGTGTGTGGGTTCACT
CTCGTGATCCCCGTGGAGCACGTCCTGTCAGTGGAGGCTACTGTTCTGAG
AAAAATAACGGTGGACAGTGCGCTGATCTTCCGAGTGAGGGAGCGGGAAA
CGAGGTGGATGAGGATGTCCTTTGTCCTGTCAGTCTGAAGAGACAATGAG
CCCATGGAAATAATTTCATGGGATCAGTGGATCCAATTTGAGAAGGTTAT
TGACCACTTGCTACTATCCACAGAGGCGAAGGCTTTTAGCGCTGCCCTGG
GCGACTTCAAGAAGAAGGGGGCCGAGGTCTTCGGGATTTCCAGTGTACGT
GCTCCTCAAGTCAGATCAAAGAGCGTTTGAGTGGTCGTGTGCCGGAGCGT
GGGACTAGAAAGGCCTTGACAAGGCATTTTTCCTCCCACAGGTTTTATCT
TTTTACCTCCCTCCGCAGGGATGAAATCAACCCACTCCTCCCCTCTCCAC
CCCTCTTTATGTTCTCTCCCCGCTTGCAATTTCCCCTCTTCTAGGACGAG
GATCACACCGCCTTTGTCGACAAGTACGGTCTGCAGATGCAGTTACTCTC
CGACGTGGGGGGAGCCACGCGCAAGGCTTACCAAGTTCCTTCCTCCCTCT
TCGGCGCCTTGGATGGCCGTGTCACCTACGTGATTGGGAAGGACCAGAAG
ATCCGTCTCATCTACGACAACCAGTTTGCCCCTGAGAGCCACGTGGAAAA
ATCCCTTGGAACCCTGGCTTAAGGTGTCTTCAAGGACACGGGAATTGACG
CAGCCCGGCGAAGCGGGGTTCCGGCAAGTCAAGTCAAGCAGCCAAAAAGA
GGGATAAATGAGATACAGAGCGTAGGAGAGAAGAAGAATGATGGCATCCA
GGGGGCTCATCGGCTGGTGTGTCAGTGGAACGAAATCCTTCCTTCCCTTT
CAAATTACACGGCACACGTGAATAACCTCGAGTCCGTGCACTTGAATGAC
ACCACCTCCTTTTCTTAGTTGTCTCTGATGCTGTCTTCCCTCGTCTCTTT
GGACTCTTGGCGGTTCCATCCTCCTATATATCACACATCCACATGTCCTT
CCGCTATC
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Coding sequence (CDS) from alignment at CM002461.1:112170..113927-

>rna3319 ID=rna3319|Name=rna3319|organism=Nannochloropsis gaditana|type=CDS|length=2172bp|location=Sequence derived from alignment at CM002461.1:112170..113927- (Nannochloropsis gaditana)
GACGAGGATCACACCGCCTTTGTCGACAAGTACGGTCTGCAGATGCAGTT
ACTCTCCGACGTGGGGGGAGCCACGCGCAAGGCTTACCAAGTTCCTTCCT
CCCTCTTCGGCGCCTTGGATGGCCGTGTCACCTACGTGATTGGGAAGGAC
CAGAAGATCCGTCTCATCTACGACAACCAGTTTGCCCCTGAGAGCCACGT
GGAAAAATCCCTTGGAACCCTGGCTTAAAGGCGAAGGCTTTTAGCGCTGC
CCTGGGCGACTTCAAGAAGAAGGGGGCCGAGGTCTTCGGGATTTCCAGTG
TGGGCGACGCAGCGCCTGACTTCGCCCTCAAGGACCAGAACAACAAGGTA
GTGAAGCTATCCACTTTCAAGGGAAAGAAGGAGGTTGTCCTTTTCTTCTA
CCCCAAAGACGACACACCCGGGTGCACAAAAGATGCGTATTATTTCCGTC
CTAGCCCTCTCTCTGGTGATGGCCGCTCAGGCCTTCATGCCCTCGAATGG
ACCGTCAATGGGTCGCTCTCGAGGCGTGATGAACATGCTCAAGGACGAGG
ATCACACCGCCTTTGTCGACAAGTACGGTCTGCAGATGCAGTTACTCTCC
GACGTGGGGGGAGCCACGCGCAAGGCTTACCAAGTTCCTTCCTCCCTCTT
CGGCGCCTTGGATGGCCGTGTCACCTACGTGATTGGGAAGGACCAGAAGA
TCCGTCTCATCTACGACAACCAGTTTGCCCCTGAGAGCCACGTGGAAAAA
TCCCTTGGAACCCTGGCTTAAAGGCGAAGGCTTTTAGCGCTGCCCTGGGC
GACTTCAAGAAGAAGGGGGCCGAGGTCTTCGGGATTTCCAGTGTGGGCGA
CGCAGCGCCTGACTTCGCCCTCAAGGACCAGAACAACAAGGTAGTGAAGC
TATCCACTTTCAAGGGAAAGAAGGAGGTTGTCCTTTTCTTCTACCCCAAA
GACGACACACCCGGGTGCACAAAAGATGCGTATTATTTCCGTCCTAGCCC
TCTCTCTGGTGATGGCCGCTCAGGCCTTCATGCCCTCGAATGGACCGTCA
ATGGGTCGCTCTCGAGGCGTGATGAACATGCTCAAGGACGAGGATCACAC
CGCCTTTGTCGACAAGTACGGTCTGCAGATGCAGTTACTCTCCGACGTGG
GGGGAGCCACGCGCAAGGCTTACCAAGTTCCTTCCTCCCTCTTCGGCGCC
TTGGATGGCCGTGTCACCTACGTGATTGGGAAGGACCAGAAGATCCGTCT
CATCTACGACAACCAGTTTGCCCCTGAGAGCCACGTGGAAAAATCCCTTG
GAACCCTGGCTTAAAGGCGAAGGCTTTTAGCGCTGCCCTGGGCGACTTCA
AGAAGAAGGGGGCCGAGGTCTTCGGGATTTCCAGTGTGGGCGACGCAGCG
CCTGACTTCGCCCTCAAGGACCAGAACAACAAGGTAGTGAAGCTATCCAC
TTTCAAGGGAAAGAAGGAGGTTGTCCTTTTCTTCTACCCCAAAGACGACA
CACCCGGGTGCACAAAAGATGCGTATTATTTCCGTCCTAGCCCTCTCTCT
GGTGATGGCCGCTCAGGCCTTCATGCCCTCGAATGGACCGTCAATGGGTC
GCTCTCGAGGCGTGATGAACATGCTCAAGGACGAGGATCACACCGCCTTT
GTCGACAAGTACGGTCTGCAGATGCAGTTACTCTCCGACGTGGGGGGAGC
CACGCGCAAGGCTTACCAAGTTCCTTCCTCCCTCTTCGGCGCCTTGGATG
GCCGTGTCACCTACGTGATTGGGAAGGACCAGAAGATCCGTCTCATCTAC
GACAACCAGTTTGCCCCTGAGAGCCACGTGGAAAAATCCCTTGGAACCCT
GGCTTAAAGGCGAAGGCTTTTAGCGCTGCCCTGGGCGACTTCAAGAAGAA
GGGGGCCGAGGTCTTCGGGATTTCCAGTGTGGGCGACGCAGCGCCTGACT
TCGCCCTCAAGGACCAGAACAACAAGGTAGTGAAGCTATCCACTTTCAAG
GGAAAGAAGGAGGTTGTCCTTTTCTTCTACCCCAAAGACGACACACCCGG
GTGCACAAAAGATGCGTATTATTTCCGTCCTAGCCCTCTCTCTGGTGATG
GCCGCTCAGGCCTTCATGCCCTCGAATGGACCGTCAATGGGTCGCTCTCG
AGGCGTGATGAACATGCTCAAG
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Synonyms
Publications