EWM27365.1, cds3310 (CDS) Nannochloropsis gaditana

Overview
NameEWM27365.1
Unique Namecds3310
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:113793..113903 -
Alignment locationCM002461.1:113335..113467 -
Alignment locationCM002461.1:112934..113004 -
Alignment locationCM002461.1:112506..112733 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27365.1
Productperoxiredoxin q
Orig transcript idgnl|cribi|Naga_100584g4.8932.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:113793..113903 -
CM002461.1supercontigCM002461.1:113335..113467 -
CM002461.1supercontigCM002461.1:112934..113004 -
CM002461.1supercontigCM002461.1:112506..112733 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0009579thylakoid
GO:0009507chloroplast
GO:0005623cell
Vocabulary: Biological Process
TermDefinition
GO:0042221response to chemical
GO:0008152metabolic process
GO:0019725cellular homeostasis
GO:0055114oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0016491oxidoreductase activity
GO:0016209antioxidant activity
Vocabulary: INTERPRO
TermDefinition
IPR000866AhpC/TSA
IPR012336Thioredoxin-like_fold
Homology
BLAST of EWM27365.1 vs. NCBI_GenBank
Match: gi|553194081|ref|XP_005855889.1| (peroxiredoxin q [Nannochloropsis gaditana CCMP526] >gi|422293165|gb|EKU20465.1| peroxiredoxin q [Nannochloropsis gaditana CCMP526] >gi|585109582|gb|EWM27365.1| peroxiredoxin q [Nannochloropsis gaditana])

HSP 1 Score: 367.081 bits (941), Expect = 1.668e-128
Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 0
Query:    1 MRIISVLALSLVMAAQAFMPSNGPSMGRSRGVMNMLKVGDAAPDFALKDQNNKVVKLSTFKGKKEVVLFFYPKDDTPGCTKEAKAFSAALGDFKKKGAEVFGISSDEDHTAFVDKYGLQMQLLSDVGGATRKAYQVPSSLFGALDGRVTYVIGKDQKIRLIYDNQFAPESHVEKSLGTLA 180
            MRIISVLALSLVMAAQAFMPSNGPSMGRSRGVMNMLKVGDAAPDFALKDQNNKVVKLSTFKGKKEVVLFFYPKDDTPGCTKEAKAFSAALGDFKKKGAEVFGISSDEDHTAFVDKYGLQMQLLSDVGGATRKAYQVPSSLFGALDGRVTYVIGKDQKIRLIYDNQFAPESHVEKSLGTLA
Sbjct:    1 MRIISVLALSLVMAAQAFMPSNGPSMGRSRGVMNMLKVGDAAPDFALKDQNNKVVKLSTFKGKKEVVLFFYPKDDTPGCTKEAKAFSAALGDFKKKGAEVFGISSDEDHTAFVDKYGLQMQLLSDVGGATRKAYQVPSSLFGALDGRVTYVIGKDQKIRLIYDNQFAPESHVEKSLGTLA 180          
BLAST of EWM27365.1 vs. NCBI_GenBank
Match: gi|873227049|emb|CEM19577.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 203.371 bits (516), Expect = 1.577e-63
Identity = 94/157 (59.87%), Postives = 120/157 (76.43%), Query Frame = 0
Query:   24 PSMGRSRGVMNMLKVGDAAPDFALKDQNNKVVKLSTFKGKKEVVLFFYPKDDTPGCTKEAKAFSAALGDFKKKGAEVFGISSDEDHTAFVDKYGLQMQLLSDVGGATRKAYQVPSSLFGALDGRVTYVIGKDQKIRLIYDNQFAPESHVEKSLGTLA 180
            PS+      ++M+KVG+ APDF+LKDQ+ KVVKLS+FK KK VV+FFYP D TPGCTK+A+AF+ AL DFKK GAEV G+SSD DH+ F+  YGL+M LLSD+GG  RK +QVP ++FGAL GRVTYVIGKD  ++ +YDN    ESH+ ++   LA
Sbjct:   39 PSLSHRYAPLSMVKVGEMAPDFSLKDQSGKVVKLSSFKNKKSVVVFFYPADMTPGCTKQAQAFNTALDDFKKLGAEVIGVSSDADHSEFISAYGLKMTLLSDIGGEVRKQWQVPGAMFGALPGRVTYVIGKDGIVKKVYDNLLDSESHIPQARAALA 195          
BLAST of EWM27365.1 vs. NCBI_GenBank
Match: gi|545712962|ref|XP_005708785.1| (peroxiredoxin Q/BCP [Galdieria sulphuraria] >gi|452825267|gb|EME32265.1| peroxiredoxin Q/BCP [Galdieria sulphuraria])

HSP 1 Score: 177.948 bits (450), Expect = 1.803e-53
Identity = 86/147 (58.50%), Postives = 109/147 (74.15%), Query Frame = 0
Query:   33 MNMLKVGDAAPDFALKDQNNKVVKLSTFKGKKEVVLFFYPKDDTPGCTKEAKAFSAALGDFKKKGAEVFGISSDEDHTAFVDKYGLQMQLLSDVGGATRKAYQVPSSLFGALDGRVTYVIGKDQKIRLIYDNQFAPESHVEKSLGTL 179
            +NM+K G+AAPDF+LKDQ+   V+LS FKGKK V+L+FYPKDDTPGCTK+A  F  A+ DF + GAEV G+SSD+DH  FV+KY L  +LLSD G   RK Y+VPS+ FG L GRVTYVI +   ++ IY+NQF  E HVE++   L
Sbjct:   54 LNMVKEGEAAPDFSLKDQDGNNVRLSDFKGKKAVILYFYPKDDTPGCTKQALCFREAIEDFAQLGAEVIGVSSDQDHRKFVEKYKLPFKLLSDEGSKVRKLYEVPST-FGILPGRVTYVIDRQGIVKKIYNNQFRSELHVEEAKKAL 199          
BLAST of EWM27365.1 vs. NCBI_GenBank
Match: gi|299471822|emb|CBN79489.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 170.629 bits (431), Expect = 2.205e-51
Identity = 82/145 (56.55%), Postives = 104/145 (71.72%), Query Frame = 0
Query:   35 MLKVGDAAPDFALKDQNNKVVKLSTFKGKKEVVLFFYPKDDTPGCTKEAKAFSAALGDFKKKGAEVFGISSDEDHTAFVDKYGLQMQLLSDVGGATRKAYQVPSSLFGALDGRVTYVIGKDQKIRLIYDNQFAPESHVEKSLGTL 179
            M+ VG AAPDF L +QN K V LS+FK KK+VV+FFYPKD TPGCTKEA+ F + L  FKK GAEV GISSD DHT FV +  L M LLSD+GG  RKA++V  ++FG +DGRVTYV+ K+  +  +YDN     +H +++L  L
Sbjct:    1 MVSVGQAAPDFKLNNQNGKPVALSSFKNKKKVVVFFYPKDSTPGCTKEAQTFQSDLAKFKKAGAEVIGISSDADHTEFVKENNLSMTLLSDIGGKVRKAWKVKGAVFGTIDGRVTYVLDKNGVVTSMYDNLLDGAAHSKEALKAL 145          
BLAST of EWM27365.1 vs. NCBI_GenBank
Match: gi|545368462|ref|XP_005649012.1| (alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen [Coccomyxa subellipsoidea C-169] >gi|384250990|gb|EIE24468.1| alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 163.31 bits (412), Expect = 2.418e-48
Identity = 81/152 (53.29%), Postives = 108/152 (71.05%), Query Frame = 0
Query:   33 MNMLKVGDAAPDFALKDQNNKVVKLSTFKG--KKEVVLFFYPKDDTPGCTKEAKAFSAALGDFKKKGAEVFGISSD--EDHTAFVDKYGLQMQLLSDVGGATRKAYQVPSSLFGALDGRVTYVIGKDQKIRLIYDNQFAPESHVEKSLGTLA 180
            ++  KVGD APDF+LKDQ+ K VKLS+++G   K VVL+FYP D +PGCTK+AKAF+ A+G+FKK GA V G+S D  E H  F  + G+  QLL+D G   RK Y V   L G L+GR TYVIGKD  ++L+++NQ+ PE HV+++L  LA
Sbjct:    4 LHATKVGDKAPDFSLKDQSGKTVKLSSYQGIFGKPVVLYFYPADASPGCTKQAKAFTDAIGEFKKAGATVVGVSGDDVESHQKFKSELGIPFQLLADEGNEVRKTYGVKKDLLGLLEGRQTYVIGKDGIVKLVFNNQWEPEKHVDEALKALA 155          
BLAST of EWM27365.1 vs. NCBI_GenBank
Match: gi|743774151|ref|XP_010917427.1| (PREDICTED: peroxiredoxin Q, chloroplastic [Elaeis guineensis])

HSP 1 Score: 160.614 bits (405), Expect = 1.311e-46
Identity = 81/143 (56.64%), Postives = 96/143 (67.13%), Query Frame = 0
Query:   39 GDAAPDFALKDQNNKVVKLSTFKGKKEVVLFFYPKDDTPGCTKEAKAFSAALGDFKKKGAEVFGISSDE--DHTAFVDKYGLQMQLLSDVGGATRKAYQVPSSLFGALDGRVTYVIGKDQKIRLIYDNQFAPESHVEKSLGTL 179
            GD  P F LKDQN + V L+ FKGK  VV++FYP D+TPGCTKEA AF  +   FKK GAEV GIS D+   H AF  KYGL   LLSD G   RK + VPS LFG L GR TYVI +   ++L+Y+NQF PE HVE++L  L
Sbjct:   68 GDVPPPFTLKDQNGRNVSLTRFKGK-PVVVYFYPADETPGCTKEACAFRDSYEKFKKAGAEVVGISGDDPASHKAFATKYGLPFTLLSDEGNTVRKEWGVPSDLFGVLPGRQTYVIDRKGVVQLVYNNQFQPEKHVEETLKLL 209          
BLAST of EWM27365.1 vs. NCBI_GenBank
Match: gi|672166909|ref|XP_008803394.1| (PREDICTED: peroxiredoxin Q, chloroplastic-like [Phoenix dactylifera])

HSP 1 Score: 160.229 bits (404), Expect = 2.429e-46
Identity = 81/143 (56.64%), Postives = 95/143 (66.43%), Query Frame = 0
Query:   39 GDAAPDFALKDQNNKVVKLSTFKGKKEVVLFFYPKDDTPGCTKEAKAFSAALGDFKKKGAEVFGISSDE--DHTAFVDKYGLQMQLLSDVGGATRKAYQVPSSLFGALDGRVTYVIGKDQKIRLIYDNQFAPESHVEKSLGTL 179
            GD  P F LKDQN + V L+ FKGK  VV +FYP D+TPGCTKEA AF  +   FKK GAEV GIS D+   H AF  KYGL   LLSD G   RK + VPS LFG L GR TYVI +   ++L+Y+NQF PE HVE++L  L
Sbjct:   69 GDVPPPFTLKDQNGRNVSLTRFKGKPAVV-YFYPADETPGCTKEACAFRDSYEKFKKAGAEVVGISGDDPASHKAFATKYGLPFTLLSDEGNKVRKEWGVPSDLFGVLPGRQTYVIDRKGAVQLVYNNQFQPEKHVEETLKLL 210          
BLAST of EWM27365.1 vs. NCBI_GenBank
Match: gi|1035954403|gb|OAY76432.1| (Peroxiredoxin Q, chloroplastic, partial [Ananas comosus])

HSP 1 Score: 156.762 bits (395), Expect = 7.199e-46
Identity = 80/143 (55.94%), Postives = 97/143 (67.83%), Query Frame = 0
Query:   39 GDAAPDFALKDQNNKVVKLSTFKGKKEVVLFFYPKDDTPGCTKEAKAFSAALGDFKKKGAEVFGISSDE--DHTAFVDKYGLQMQLLSDVGGATRKAYQVPSSLFGALDGRVTYVIGKDQKIRLIYDNQFAPESHVEKSLGTL 179
            GD  P+F LKDQ+ K V LS FKGK  VV++FYP D+TPGCTKEA AF  +   FKK GAEV GIS D+   H AF  KY L   LLSD G   RK + VPS LFG L GR TYV+ ++  ++L+Y+NQF PE HVE++L  L
Sbjct:    4 GDVPPNFTLKDQDGKTVSLSKFKGK-PVVVYFYPADETPGCTKEACAFRDSYEKFKKAGAEVVGISGDDPSSHKAFATKYRLPFTLLSDEGNKVRKGWGVPSDLFGTLPGRQTYVLDRNGVVQLVYNNQFQPEKHVEETLKLL 145          
BLAST of EWM27365.1 vs. NCBI_GenBank
Match: gi|565467886|ref|XP_006291823.1| (hypothetical protein CARUB_v10017999mg [Capsella rubella] >gi|482560530|gb|EOA24721.1| hypothetical protein CARUB_v10017999mg [Capsella rubella])

HSP 1 Score: 158.303 bits (399), Expect = 1.325e-45
Identity = 82/151 (54.30%), Postives = 100/151 (66.23%), Query Frame = 0
Query:   31 GVMNMLKVGDAAPDFALKDQNNKVVKLSTFKGKKEVVLFFYPKDDTPGCTKEAKAFSAALGDFKKKGAEVFGISSDED--HTAFVDKYGLQMQLLSDVGGATRKAYQVPSSLFGALDGRVTYVIGKDQKIRLIYDNQFAPESHVEKSLGTL 179
            G+   +  G AAPDF LKDQN K V L  +KGK  VVL+FYP D+TPGCTK+A AF  +   FKK GAEV GIS D+   H AF  KY L   LLSD G   RK + VP  LFGAL GR TYV+ K+  ++LIY+NQF PE H++++L  L
Sbjct:   64 GIFAKVNKGQAAPDFTLKDQNGKPVSLKKYKGK-PVVLYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSASHKAFASKYKLPYTLLSDEGNKVRKDWGVPGDLFGALPGRQTYVLDKNGVVQLIYNNQFQPEKHIDETLKFL 213          
BLAST of EWM27365.1 vs. NCBI_GenBank
Match: gi|1002274243|ref|XP_015641442.1| (PREDICTED: putative peroxiredoxin Q, chloroplastic isoform X2 [Oryza sativa Japonica Group] >gi|158517782|sp|P0C5D4.1|PRXQ_ORYSI RecName: Full=Putative peroxiredoxin Q, chloroplastic; AltName: Full=Thioredoxin reductase; Flags: Precursor >gi|158517783|sp|P0C5D5.1|PRXQ_ORYSJ RecName: Full=Peroxiredoxin Q, chloroplastic; AltName: Full=Thioredoxin reductase; Flags: Precursor >gi|51090743|dbj|BAD35223.1| putative peroxiredoxin Q [Oryza sativa Japonica Group] >gi|113595092|dbj|BAF18966.1| Os06g0196300 [Oryza sativa Japonica Group] >gi|215765468|dbj|BAG87165.1| unnamed protein product [Oryza sativa Japonica Group] >gi|218197740|gb|EEC80167.1| hypothetical protein OsI_22010 [Oryza sativa Indica Group] >gi|937921696|dbj|BAS96613.1| Os06g0196300 [Oryza sativa Japonica Group])

HSP 1 Score: 157.918 bits (398), Expect = 1.751e-45
Identity = 83/174 (47.70%), Postives = 110/174 (63.22%), Query Frame = 0
Query:    8 ALSLVMAAQAFMPSNGPSMGRSRGVMNMLKVGDAAPDFALKDQNNKVVKLSTFKGKKEVVLFFYPKDDTPGCTKEAKAFSAALGDFKKKGAEVFGISSDE--DHTAFVDKYGLQMQLLSDVGGATRKAYQVPSSLFGALDGRVTYVIGKDQKIRLIYDNQFAPESHVEKSLGTL 179
            A +    A+A +PS   + GR+R V   +  G AAP+F L+DQ+ + V LS FKG+  VV++FYP D+TPGCTK+A AF  +   FKK GAEV GIS D+   H  F  KY L   LLSD G   RK + VP+ LFG L GR TYV+ K+  ++ IY+NQF PE H+ ++L  L
Sbjct:   45 ATTTPTPARAALPS---TTGRNRIVCGKVSKGSAAPNFTLRDQDGRAVSLSKFKGR-PVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDAASHKEFKKKYKLPFTLLSDEGNKVRKEWGVPADLFGTLPGRQTYVLDKNGVVQYIYNNQFQPEKHIGETLKIL 214          
The following BLAST results are available for this feature:
BLAST of EWM27365.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Position :
0
Zoom :
x 1
01SequenceXP_005855889.1CEM19577.1XP_005708785.1CBN79489.1XP_005649012.1XP_010917427.1XP_008803394.1OAY76432.1XP_006291823.1XP_015641442.1
Match NameE-valueIdentityDescription
gi|553194081|ref|XP_005855889.1|1.668e-128100.00peroxiredoxin q [Nannochloropsis gaditana CCMP526]... [more]
gi|873227049|emb|CEM19577.1|1.577e-6359.87unnamed protein product [Vitrella brassicaformis C... [more]
gi|545712962|ref|XP_005708785.1|1.803e-5358.50peroxiredoxin Q/BCP [Galdieria sulphuraria] >gi|45... [more]
gi|299471822|emb|CBN79489.1|2.205e-5156.55conserved unknown protein [Ectocarpus siliculosus][more]
gi|545368462|ref|XP_005649012.1|2.418e-4853.29alkyl hydroperoxide reductase/ thiol specific anti... [more]
gi|743774151|ref|XP_010917427.1|1.311e-4656.64PREDICTED: peroxiredoxin Q, chloroplastic [Elaeis ... [more]
gi|672166909|ref|XP_008803394.1|2.429e-4656.64PREDICTED: peroxiredoxin Q, chloroplastic-like [Ph... [more]
gi|1035954403|gb|OAY76432.1|7.199e-4655.94Peroxiredoxin Q, chloroplastic, partial [Ananas co... [more]
gi|565467886|ref|XP_006291823.1|1.325e-4554.30hypothetical protein CARUB_v10017999mg [Capsella r... [more]
gi|1002274243|ref|XP_015641442.1|1.751e-4547.70PREDICTED: putative peroxiredoxin Q, chloroplastic... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3319rna3319Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications