rna3309, rna3309 (mRNA) Nannochloropsis gaditana

Overview
Namerna3309
Unique Namerna3309
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1091
Alignment locationCM002461.1:66167..67410 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100696g2.1600.mrna
Orig protein idgnl|cribi|Naga_100696g2.1600
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:66167..67410 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100696g2gene3185Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3309rna3309-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27373.1cds3300Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3309 ID=rna3309|Name=rna3309|organism=Nannochloropsis gaditana|type=mRNA|length=1091bp
ATGGAGCAGATGGAGGCGAGCTCCCCGGAGGAGACGGTGGATGGCGCGGA
GACAGAGGAAGAGATGCGGAAACGTCACAAGGCAGAAGTCCGGCAATTGG
AAGGGAAGACAAGGGCCCTCTTAAAGAAAGCCCCAAAGCCCAAAAAGGCA
GATGTGCAAGGTGAAGTGGCTAGGATGGAGCGGGACATGGAAGAACGTCA
CGCACGGGAACTGGGAAAATTCGCAGCGGCACCGAATGGCGGGAGAGAAG
CAGAGGAGGAGGCTGCCCGGGCGCTTGCCAAGGAAGGCGTCGTCTCTCTG
CGAGACCTGGAGATGGGCCAGATCCTCTCCCTTCTCTCCCCCCTTGGCCT
CCGCGTCCAGGAAGTCCCCGCCGACGGCCACTGTCTCTACCGTGCCGTTG
CACACCAGCTTGAGCACCAGGGTATTCCCTCGCAGGGCTACCCGGAAGTA
CGACGATCCGCCGCTCAATACATCCTGTCCCACCCTGAGGATTTCCTCCC
TTTCCTAGCAGGAGGGGAGGAAGGGGAGGGAGCGGGCTTGGAGGCGTACG
TGCATACGGTGGAGGACACGGCGGAGTGGGGTGGGGAGCTGGAGATACGG
GCGCTGTGCCACGCGTACCAGACACCCATTCGGGTGTATGCTGCGGAGCA
ACCCGTCTACATGATCGGGGCAGAGGACTACGACCAGGCCAAGCCCCTCC
TCTTGTCCTACCACAGGCATTTTTACGCGTTGGGCGAGCACTATAATAGC
GTGGTCCCAGTGGAGGGACGGGTGGAGGAGGGCTGAACTAGAAAAGAAAC
GGTCGTAAGGGCGGGCGGATAAATTTTAGTTTGGCCGGAGGGAAGACGCA
CCTCTTTGAGGCTCCCACCCTGGACATTTCTGTTTTTTGTTTGCCTAGAT
TTTAAAGCTCACTTTCTCTGTTCCACCTCCTGTCTATTCTGCTGCCTCCT
CCTCCTCCAATTTTAGCTCGGCAAATCCGAGGGATGCTACATAAGGAAGA
AAAACAGGACATGTCGACATAGGCATGGGCCCAACTTGTGTCACGGCATC
ATTTTTCCCCTTCCCTTTGCTTTTGCTTCTCAAATAAGCGC
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protein sequence of rna3309

>rna3309-protein ID=rna3309-protein|Name=rna3309|organism=Nannochloropsis gaditana|type=polypeptide|length=200bp
MVLHPAVLPPSLLRAHAGLQPSSLTLALAACLSMAILYVASLYLLPASIR
LRHRDDPLHIKARFVSVIVACLLSIRIFLLFASPSPGAGLPIYVWLGLTG
WNNPSVFLPLLAIVCLFLGPITVMIAECYYDRWYELVEYQSSRSLLYHLS
RRTAPSPRSWLEWVDQRRRRHGQGKDVLWRNLVVAPLTEARGEGGREGGR
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mRNA from alignment at CM002461.1:66167..67410+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3309 ID=rna3309|Name=rna3309|organism=Nannochloropsis gaditana|type=mRNA|length=1244bp|location=Sequence derived from alignment at CM002461.1:66167..67410+ (Nannochloropsis gaditana)
ttccatcatTTCTGGTGCTTGGATCAAAGACAGAGAGAAAACATGTGCGG
AACGTTTTAATTGATGGACTACGAGGCGATCCTCAGTAGCCGCGCCGTCA
TAGTTCCCTTCGTGTATCACTTCCCTCAGGCATGATTTCTAATTCCTACA
CACACATATACCTCAGGATCGGAGAGGCGTGTTCAAGAGAGGCAACGCTC
CATTTTTAATGGTGCTACACCCAGCGgtccttccgccctccctgcttcgA
GCCCATGCCGGGCTacagccctcctccctcacactAGCCTTGGCCGCATG
TCTCAGTATGGCGATCCTGTACGTCGCGTCCTTGTATCTCTTGCCCGCCT
CCATCCGACTCCGGCACCGCGATGATCCTCTTCATATCAAGGCACGATTC
GTGTCCGTGATTGTGGCGTGCCTCCTTTCAATACGGTACCGACTCGAGCG
ACAccagcaaggggggaggtagacTGCCTGTCGTGCGACCATCAATTCAT
CAATATCAATGTACACAggatttttcttctcttcgcCAGTCCCTCGCCAG
GAGCCGGTCTCCCCATTTATGTCTGGCTGGGTCTTACAGGTACGTAACCC
TAACCGACCGTGACATTCGTTGCTGTCGCGGTTGCTACCCCCCTCACGCC
CGCATGCCCTCTtctgccctcgcctccctcccaggatGGAACAATCCcag
cgtcttcctccccttgctcgccATCgtttgcctcttcctcgggccTATCA
CGGTTATGATAGCGGGTAcgcacgcctccctcacacGCCCGGCCCATCTC
TGCTAAGCCATCCatgaccctccctctgcccccccttccccgccttcctc
ttcccttctaccTTTCATTTGTcgcttctccccttctccttttccttttc
ctctgtGACTCTTCACCCGCGCTCTGCCCTTTTCCACACTCCcgcgttcc
tccctccccacctttcctccctccttctctccctcccttcccccctccct
ccctccctccctccacccttaGAATGCTACTACGACCGCTGGTACGAGCT
GGTCGAATACCAGTCGTCCCGAtccctcctctaccaccTCTCTCGCCGCA
ccgcaccctctcctcgaAGCTGGCTGGAGTGGGTGGATCAACGCAGGCGC
CGACACGGACAGGGCAAAGACGTCCTCTGGAGGAACCTAGTGGTGGCGCC
CCTGACGGAggcaagaggggagggagggagggagggagggagag
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Coding sequence (CDS) from alignment at CM002461.1:66167..67410+

>rna3309 ID=rna3309|Name=rna3309|organism=Nannochloropsis gaditana|type=CDS|length=2404bp|location=Sequence derived from alignment at CM002461.1:66167..67410+ (Nannochloropsis gaditana)
ATGGTGCTACACCCAGCGgtccttccgccctccctgcttcgAGCCCATGC
CGGGCTacagccctcctccctcacactAGCCTTGGCCGCATGTCTCAGTA
TGGCGATCCTGTACGTCGCGTCCTTGTATCTCTTGCCCGCCTCCATCCGA
CTCCGGCACCGCGATGATCCTCTTCATATCAAGGCACGATTCGTGTCCGT
GATTGTGGCGTGCCTCCTTTCAATACGgatttttcttctcttcgcCAGTC
CCTCGCCAGGAGCCGGTCTCCCCATTTATGTCTGGCTGGGTCTTACAGga
tGGAACAATCCcagcgtcttcctccccttgctcgccATCgtttgcctctt
cctcgggccTATCACGGTTATGATAGCGGAATGCTACTACGACCGCTGGT
ACGAGCTGGTCGAATACCAGTCGTCCCGAtccctcctctaccaccTCTCT
CGCCGCAccgcaccctctcctcgaAGCTGGCTGGAGTGGGTGGATCAACG
CAGGCGCCGACACGGACAGGGCAAAGACGTCCTCTGGAGGAACCTAGTGG
TGGCGCCCCTGACGGAggcaagaggggagggagggagggagggagggaga
gATGGTGCTACACCCAGCGgtccttccgccctccctgcttcgAGCCCATG
CCGGGCTacagccctcctccctcacactAGCCTTGGCCGCATGTCTCAGT
ATGGCGATCCTGTACGTCGCGTCCTTGTATCTCTTGCCCGCCTCCATCCG
ACTCCGGCACCGCGATGATCCTCTTCATATCAAGGCACGATTCGTGTCCG
TGATTGTGGCGTGCCTCCTTTCAATACGgatttttcttctcttcgcCAGT
CCCTCGCCAGGAGCCGGTCTCCCCATTTATGTCTGGCTGGGTCTTACAGg
atGGAACAATCCcagcgtcttcctccccttgctcgccATCgtttgcctct
tcctcgggccTATCACGGTTATGATAGCGGAATGCTACTACGACCGCTGG
TACGAGCTGGTCGAATACCAGTCGTCCCGAtccctcctctaccaccTCTC
TCGCCGCAccgcaccctctcctcgaAGCTGGCTGGAGTGGGTGGATCAAC
GCAGGCGCCGACACGGACAGGGCAAAGACGTCCTCTGGAGGAACCTAGTG
GTGGCGCCCCTGACGGAggcaagaggggagggagggagggagggagggag
agATGGTGCTACACCCAGCGgtccttccgccctccctgcttcgAGCCCAT
GCCGGGCTacagccctcctccctcacactAGCCTTGGCCGCATGTCTCAG
TATGGCGATCCTGTACGTCGCGTCCTTGTATCTCTTGCCCGCCTCCATCC
GACTCCGGCACCGCGATGATCCTCTTCATATCAAGGCACGATTCGTGTCC
GTGATTGTGGCGTGCCTCCTTTCAATACGgatttttcttctcttcgcCAG
TCCCTCGCCAGGAGCCGGTCTCCCCATTTATGTCTGGCTGGGTCTTACAG
gatGGAACAATCCcagcgtcttcctccccttgctcgccATCgtttgcctc
ttcctcgggccTATCACGGTTATGATAGCGGAATGCTACTACGACCGCTG
GTACGAGCTGGTCGAATACCAGTCGTCCCGAtccctcctctaccaccTCT
CTCGCCGCAccgcaccctctcctcgaAGCTGGCTGGAGTGGGTGGATCAA
CGCAGGCGCCGACACGGACAGGGCAAAGACGTCCTCTGGAGGAACCTAGT
GGTGGCGCCCCTGACGGAggcaagaggggagggagggagggagggaggga
gagATGGTGCTACACCCAGCGgtccttccgccctccctgcttcgAGCCCA
TGCCGGGCTacagccctcctccctcacactAGCCTTGGCCGCATGTCTCA
GTATGGCGATCCTGTACGTCGCGTCCTTGTATCTCTTGCCCGCCTCCATC
CGACTCCGGCACCGCGATGATCCTCTTCATATCAAGGCACGATTCGTGTC
CGTGATTGTGGCGTGCCTCCTTTCAATACGgatttttcttctcttcgcCA
GTCCCTCGCCAGGAGCCGGTCTCCCCATTTATGTCTGGCTGGGTCTTACA
GgatGGAACAATCCcagcgtcttcctccccttgctcgccATCgtttgcct
cttcctcgggccTATCACGGTTATGATAGCGGAATGCTACTACGACCGCT
GGTACGAGCTGGTCGAATACCAGTCGTCCCGAtccctcctctaccaccTC
TCTCGCCGCAccgcaccctctcctcgaAGCTGGCTGGAGTGGGTGGATCA
ACGCAGGCGCCGACACGGACAGGGCAAAGACGTCCTCTGGAGGAACCTAG
TGGTGGCGCCCCTGACGGAggcaagaggggagggagggagggagggaggg
agag
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Synonyms
Publications