EWM27373.1, cds3300 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27373.1 vs. NCBI_GenBank
Match: gi|585109596|gb|EWM27373.1| (hypothetical protein Naga_100696g2, partial [Nannochloropsis gaditana]) HSP 1 Score: 398.282 bits (1022), Expect = 2.838e-140 Identity = 200/200 (100.00%), Postives = 200/200 (100.00%), Query Frame = 0
Query: 1 MVLHPAVLPPSLLRAHAGLQPSSLTLALAACLSMAILYVASLYLLPASIRLRHRDDPLHIKARFVSVIVACLLSIRIFLLFASPSPGAGLPIYVWLGLTGWNNPSVFLPLLAIVCLFLGPITVMIAECYYDRWYELVEYQSSRSLLYHLSRRTAPSPRSWLEWVDQRRRRHGQGKDVLWRNLVVAPLTEARGEGGREGGR 200
MVLHPAVLPPSLLRAHAGLQPSSLTLALAACLSMAILYVASLYLLPASIRLRHRDDPLHIKARFVSVIVACLLSIRIFLLFASPSPGAGLPIYVWLGLTGWNNPSVFLPLLAIVCLFLGPITVMIAECYYDRWYELVEYQSSRSLLYHLSRRTAPSPRSWLEWVDQRRRRHGQGKDVLWRNLVVAPLTEARGEGGREGGR
Sbjct: 1 MVLHPAVLPPSLLRAHAGLQPSSLTLALAACLSMAILYVASLYLLPASIRLRHRDDPLHIKARFVSVIVACLLSIRIFLLFASPSPGAGLPIYVWLGLTGWNNPSVFLPLLAIVCLFLGPITVMIAECYYDRWYELVEYQSSRSLLYHLSRRTAPSPRSWLEWVDQRRRRHGQGKDVLWRNLVVAPLTEARGEGGREGGR 200
BLAST of EWM27373.1 vs. NCBI_GenBank
Match: gi|1108469963|emb|CRL02518.1| (CLUMA_CG015347, isoform A, partial [Clunio marinus]) HSP 1 Score: 66.2402 bits (160), Expect = 2.312e-9 Identity = 56/169 (33.14%), Postives = 84/169 (49.70%), Query Frame = 0
Query: 23 SLTLALAACLSMAILYVASLYLLPASIRLRHRDDPLHIKARFVSVIVACLLSIRIFLLFASPSPGAGLPIYVWLGL-TGWNNPSVFLPLLAIVCLFLGPITVMIAECYYDRWYELVEYQSSRSLLYHLSRRTAPSPRSWLEWVDQRRRRHGQGKDVLW-RNLVVAPLTE 189
S+ +L +CL+++ILYV+SLY+ + +RD P +K RF SV V L+S LF+SP+ I+ +GL T +VF+PLL + LFLGP++V + + + E P WL H Q ++LW RN +VAPL+E
Sbjct: 6 SVYTSLGSCLALSILYVSSLYVWSSE---ENRDHPSTVKKRFFSVFVVMLISPFFVYLFSSPNMFNYYTIWEVMGLRTKGLMSAVFIPLLLTMILFLGPLSVQLTNGIWKIYSE---------------------PMFWLN--------HCQ--NLLWIRNHIVAPLSE 140
BLAST of EWM27373.1 vs. NCBI_GenBank
Match: gi|908412165|ref|XP_013067208.1| (PREDICTED: CAAX prenyl protease 2-like [Biomphalaria glabrata]) HSP 1 Score: 62.003 bits (149), Expect = 4.248e-8 Identity = 37/99 (37.37%), Postives = 58/99 (58.59%), Query Frame = 0
Query: 27 ALAACLSMAILYVASLYLLPASIRLRHRDDPLHIKARFVSVIVACLLSIRIFLLFASPSPGA-GLPIYVWLGLTGWN-NPSVFLPLLAIVCLFLGPITV 123
A+ C A+LYV SLY+ S + ++RD P IK RF+SV++ C ++ I LL + S A + WLG+ W P++ +PL + LFLGP+++
Sbjct: 13 AILLCFLFAVLYVGSLYIWGGSTKEKNRDHPDVIKRRFISVLIVCTVTPLILLLVSKASDTAEANHLLTWLGIRFWGLLPALVVPLFLTMVLFLGPLSL 111
BLAST of EWM27373.1 vs. NCBI_GenBank
Match: gi|524864634|ref|XP_005089152.1| (PREDICTED: CAAX prenyl protease 2-like [Aplysia californica]) HSP 1 Score: 59.6918 bits (143), Expect = 2.637e-7 Identity = 39/112 (34.82%), Postives = 60/112 (53.57%), Query Frame = 0
Query: 26 LALAACLSMAILYVASLYLLPASIRLRHRDDPLHIKARFVSVIVACLLSIRIFLLFASPSPGA-GLPIYVWLGLTGWNN-PSVFLPLLAIVCLFLGPITVMIAECYYDRWYE 135
LA+ C A+LYV SLY+ A+I+ + RD P IK RF+SV C ++ + ASPS + WLG+ W P+ +PL + LFLGP+++ + + + E
Sbjct: 13 LAILLCFFFAVLYVGSLYVWGATIKDKSRDHPDVIKRRFLSVASVCAIAPVLLWTVASPSDKVHANTLLEWLGIRFWGFIPACIVPLFLTMVLFLGPLSLHYLDGVFSLYLE 124
BLAST of EWM27373.1 vs. NCBI_GenBank
Match: gi|470508014|ref|XP_004367684.1| (CAAX prenyl protease 2, putative [Acanthamoeba castellanii str. Neff] >gi|470522969|ref|XP_004354538.1| protease [Acanthamoeba castellanii str. Neff] >gi|440801408|gb|ELR22428.1| CAAX prenyl protease 2, putative [Acanthamoeba castellanii str. Neff] >gi|440803495|gb|ELR24393.1| protease [Acanthamoeba castellanii str. Neff]) HSP 1 Score: 58.9214 bits (141), Expect = 4.742e-7 Identity = 52/165 (31.52%), Postives = 80/165 (48.48%), Query Frame = 0
Query: 27 ALAACLSMAILYVASLYLLPASIRLRHRDDPLHIKARFVSVIVACLLSIRIFLLFASPSPGAGLPIYVWLGL--TGWNNPSVFLPLLAIVCLFLGPITVMIAECYYDRWYELVEYQSSRSLLYHLSRRTAPSPRSWLEWVDQRRRRHGQGKDVLWRNLVVAPLTE 189
A+ +C+ +A +V SLYL P R+ R+ P+ IK RF SV +AC+ ++ I+L F + G + W+G+ TG ++ +PL + LF GP +A YYD W+ +H+ R T + DQ + + WRN VV P TE
Sbjct: 14 AVVSCVGLAGWFVGSLYLWPDLHRID-RNSPVVIKRRFASVGLACVTAV-IYLYFWANDRDLG-KVMEWMGVRTTGIIQAAI-IPLALTMVLFAGP----LAMTYYDDWF------------FHIQRGTLHTYL-----FDQLKAD--VSSLIFWRNYVVGPFTE 151 The following BLAST results are available for this feature:
BLAST of EWM27373.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 5
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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