EWM27373.1, cds3300 (CDS) Nannochloropsis gaditana

Overview
NameEWM27373.1
Unique Namecds3300
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:66375..66601 +
Alignment locationCM002461.1:66685..66755 +
Alignment locationCM002461.1:66851..66931 +
Alignment locationCM002461.1:67189..67410 +

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Properties
Property NameValue
End range.
End range67410
Protein idEWM27373.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_100696g2.1600.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:66375..66601 +
CM002461.1supercontigCM002461.1:66685..66755 +
CM002461.1supercontigCM002461.1:66851..66931 +
CM002461.1supercontigCM002461.1:67189..67410 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0019538protein metabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM27373.1 vs. NCBI_GenBank
Match: gi|585109596|gb|EWM27373.1| (hypothetical protein Naga_100696g2, partial [Nannochloropsis gaditana])

HSP 1 Score: 398.282 bits (1022), Expect = 2.838e-140
Identity = 200/200 (100.00%), Postives = 200/200 (100.00%), Query Frame = 0
Query:    1 MVLHPAVLPPSLLRAHAGLQPSSLTLALAACLSMAILYVASLYLLPASIRLRHRDDPLHIKARFVSVIVACLLSIRIFLLFASPSPGAGLPIYVWLGLTGWNNPSVFLPLLAIVCLFLGPITVMIAECYYDRWYELVEYQSSRSLLYHLSRRTAPSPRSWLEWVDQRRRRHGQGKDVLWRNLVVAPLTEARGEGGREGGR 200
            MVLHPAVLPPSLLRAHAGLQPSSLTLALAACLSMAILYVASLYLLPASIRLRHRDDPLHIKARFVSVIVACLLSIRIFLLFASPSPGAGLPIYVWLGLTGWNNPSVFLPLLAIVCLFLGPITVMIAECYYDRWYELVEYQSSRSLLYHLSRRTAPSPRSWLEWVDQRRRRHGQGKDVLWRNLVVAPLTEARGEGGREGGR
Sbjct:    1 MVLHPAVLPPSLLRAHAGLQPSSLTLALAACLSMAILYVASLYLLPASIRLRHRDDPLHIKARFVSVIVACLLSIRIFLLFASPSPGAGLPIYVWLGLTGWNNPSVFLPLLAIVCLFLGPITVMIAECYYDRWYELVEYQSSRSLLYHLSRRTAPSPRSWLEWVDQRRRRHGQGKDVLWRNLVVAPLTEARGEGGREGGR 200          
BLAST of EWM27373.1 vs. NCBI_GenBank
Match: gi|1108469963|emb|CRL02518.1| (CLUMA_CG015347, isoform A, partial [Clunio marinus])

HSP 1 Score: 66.2402 bits (160), Expect = 2.312e-9
Identity = 56/169 (33.14%), Postives = 84/169 (49.70%), Query Frame = 0
Query:   23 SLTLALAACLSMAILYVASLYLLPASIRLRHRDDPLHIKARFVSVIVACLLSIRIFLLFASPSPGAGLPIYVWLGL-TGWNNPSVFLPLLAIVCLFLGPITVMIAECYYDRWYELVEYQSSRSLLYHLSRRTAPSPRSWLEWVDQRRRRHGQGKDVLW-RNLVVAPLTE 189
            S+  +L +CL+++ILYV+SLY+  +     +RD P  +K RF SV V  L+S     LF+SP+      I+  +GL T     +VF+PLL  + LFLGP++V +    +  + E                     P  WL         H Q  ++LW RN +VAPL+E
Sbjct:    6 SVYTSLGSCLALSILYVSSLYVWSSE---ENRDHPSTVKKRFFSVFVVMLISPFFVYLFSSPNMFNYYTIWEVMGLRTKGLMSAVFIPLLLTMILFLGPLSVQLTNGIWKIYSE---------------------PMFWLN--------HCQ--NLLWIRNHIVAPLSE 140          
BLAST of EWM27373.1 vs. NCBI_GenBank
Match: gi|908412165|ref|XP_013067208.1| (PREDICTED: CAAX prenyl protease 2-like [Biomphalaria glabrata])

HSP 1 Score: 62.003 bits (149), Expect = 4.248e-8
Identity = 37/99 (37.37%), Postives = 58/99 (58.59%), Query Frame = 0
Query:   27 ALAACLSMAILYVASLYLLPASIRLRHRDDPLHIKARFVSVIVACLLSIRIFLLFASPSPGA-GLPIYVWLGLTGWN-NPSVFLPLLAIVCLFLGPITV 123
            A+  C   A+LYV SLY+   S + ++RD P  IK RF+SV++ C ++  I LL +  S  A    +  WLG+  W   P++ +PL   + LFLGP+++
Sbjct:   13 AILLCFLFAVLYVGSLYIWGGSTKEKNRDHPDVIKRRFISVLIVCTVTPLILLLVSKASDTAEANHLLTWLGIRFWGLLPALVVPLFLTMVLFLGPLSL 111          
BLAST of EWM27373.1 vs. NCBI_GenBank
Match: gi|524864634|ref|XP_005089152.1| (PREDICTED: CAAX prenyl protease 2-like [Aplysia californica])

HSP 1 Score: 59.6918 bits (143), Expect = 2.637e-7
Identity = 39/112 (34.82%), Postives = 60/112 (53.57%), Query Frame = 0
Query:   26 LALAACLSMAILYVASLYLLPASIRLRHRDDPLHIKARFVSVIVACLLSIRIFLLFASPSPGA-GLPIYVWLGLTGWNN-PSVFLPLLAIVCLFLGPITVMIAECYYDRWYE 135
            LA+  C   A+LYV SLY+  A+I+ + RD P  IK RF+SV   C ++  +    ASPS       +  WLG+  W   P+  +PL   + LFLGP+++   +  +  + E
Sbjct:   13 LAILLCFFFAVLYVGSLYVWGATIKDKSRDHPDVIKRRFLSVASVCAIAPVLLWTVASPSDKVHANTLLEWLGIRFWGFIPACIVPLFLTMVLFLGPLSLHYLDGVFSLYLE 124          
BLAST of EWM27373.1 vs. NCBI_GenBank
Match: gi|470508014|ref|XP_004367684.1| (CAAX prenyl protease 2, putative [Acanthamoeba castellanii str. Neff] >gi|470522969|ref|XP_004354538.1| protease [Acanthamoeba castellanii str. Neff] >gi|440801408|gb|ELR22428.1| CAAX prenyl protease 2, putative [Acanthamoeba castellanii str. Neff] >gi|440803495|gb|ELR24393.1| protease [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 58.9214 bits (141), Expect = 4.742e-7
Identity = 52/165 (31.52%), Postives = 80/165 (48.48%), Query Frame = 0
Query:   27 ALAACLSMAILYVASLYLLPASIRLRHRDDPLHIKARFVSVIVACLLSIRIFLLFASPSPGAGLPIYVWLGL--TGWNNPSVFLPLLAIVCLFLGPITVMIAECYYDRWYELVEYQSSRSLLYHLSRRTAPSPRSWLEWVDQRRRRHGQGKDVLWRNLVVAPLTE 189
            A+ +C+ +A  +V SLYL P   R+  R+ P+ IK RF SV +AC+ ++ I+L F +     G  +  W+G+  TG    ++ +PL   + LF GP    +A  YYD W+            +H+ R T  +        DQ +        + WRN VV P TE
Sbjct:   14 AVVSCVGLAGWFVGSLYLWPDLHRID-RNSPVVIKRRFASVGLACVTAV-IYLYFWANDRDLG-KVMEWMGVRTTGIIQAAI-IPLALTMVLFAGP----LAMTYYDDWF------------FHIQRGTLHTYL-----FDQLKAD--VSSLIFWRNYVVGPFTE 151          
The following BLAST results are available for this feature:
BLAST of EWM27373.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 5
Match NameE-valueIdentityDescription
gi|585109596|gb|EWM27373.1|2.838e-140100.00hypothetical protein Naga_100696g2, partial [Nanno... [more]
gi|1108469963|emb|CRL02518.1|2.312e-933.14CLUMA_CG015347, isoform A, partial [Clunio marinus... [more]
gi|908412165|ref|XP_013067208.1|4.248e-837.37PREDICTED: CAAX prenyl protease 2-like [Biomphalar... [more]
gi|524864634|ref|XP_005089152.1|2.637e-734.82PREDICTED: CAAX prenyl protease 2-like [Aplysia ca... [more]
gi|470508014|ref|XP_004367684.1|4.742e-731.52CAAX prenyl protease 2, putative [Acanthamoeba cas... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3309rna3309Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications