rna3307, rna3307 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3307
Unique Name	rna3307
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	573
Alignment location	CM002461.1:59039..60517 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_101709g1.1338.mrna
Orig protein id	gnl\|cribi\|Naga_101709g1.1338
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:59039..60517 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_101709g1	gene3183	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3307	rna3307-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27375.1	cds3298	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002461.1:59039..60517-
coding sequence from alignment at CM002461.1:59039..60517-

mRNA sequence

>rna3307 ID=rna3307|Name=rna3307|organism=Nannochloropsis gaditana|type=mRNA|length=573bp
ATGAAGGAGCGCATGGCTTGCGTTGATCTCGGGGACTGGTCGATTCGAAG
TAAGCAGCCAGGGTACGGAAAAAGGGCAACGTTGCTGCCCTCTCGCACCG
CACGGGAGTCATTTCAGACTTCTCAGACCTACCAACACCTCTGCTTCCTC
CGCCTTCCCCCCGGCCGCCCAGAGAAGGGGGAGGGAGAAGGGAGGAGAGT
CTTCGCGGGCTACGTGGAACTCGGCGGGAGCGAAGAGGCGGTCTCTGCGG
GCGAGGACGGGGAAGGCTTCTACCACAGTGGCTACGCGGGCGAGGCGGCG
GGAAAGAGCCTTCGGCTGGGTACAGCCCCTTTAGGCGGGGGCGGCCCTTA
CACCAGCCACTACCAGGACGGCAGCGATGATGATTTCTCCACCAGTGGAC
CGCAAGGCCCCGTCGGTACCTGGGCGCGTTTTCGAAAGACCAGCCGAGAA
CGGTGCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCGGGGC
CTAGATACCTGCCGTTCCCTCCGCCATCCTCCCTTGTCCTCAGTTTGGTG
TCGCCTGATCGCCGTTACAATGC

protein sequence of rna3307

>rna3307-protein ID=rna3307-protein|Name=rna3307|organism=Nannochloropsis gaditana|type=polypeptide|length=168bp
MGPVDVPGTIAGAPGGAFAIQQEDFPALPGSEGGGGREGGAGGGGGQVQQ
VPRQQQPQQQQQQQQQPQQQPQQQQQQPQQQQQQQQQPSSAPPPLIEGVK
PSTLPPQQQKSRGGEAYGLLGLLSVIRMTDPDLNTLALGSDLTTLGLNLN
ATEALSSYPPATICKSNP

mRNA from alignment at CM002461.1:59039..60517-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3307 ID=rna3307|Name=rna3307|organism=Nannochloropsis gaditana|type=mRNA|length=1479bp|location=Sequence derived from alignment at CM002461.1:59039..60517- (Nannochloropsis gaditana)
ATGGGGCCGGTCGATGTTCCAGGGACCATCGCGGGAGCCCCGGGAGGTAA
TGGCCAAACAAAGGAGGGAAGAAGGGCAAGGGAGGTCAGGGGAAAAGGGG
TTGGACGGCGGGAAAGGGAGGTTGGAGAAGCGGGTCGCGTCATCACTGCT
TCCTGTCTCCTTTCTTTGATCTCCTCCGCTCCCTCCCTCCCTCCTTCCTC
ATGTACTTGCCAAGGTGCCTTTGCCATCCAACAGGAAGATTTTCCGGCCC
TACCTGGAAGCGAAGGAGGAGGAGGGCGGGAGGGAGGTGCTGGGGGAGGA
GGGGGACAGGTGCAGCAGGTCCCACGGCAGCAACAACCACAACAACAACA
ACAACAACAACAACAACCACAGCAACAACCACAGCAACAACAACAACAAC
CTCAGCAACAGCAACAACAACAGCAACAGCCGTCGTCAGGTGGGGGGTCC
GGGGGCGCGTATTGGCCGTATGCTGGGGGCGAGAAATAAGAAGGGGCAGA
GGGGGGAGTCGTCTAGGGTTAGGGTTAGGATTAGGGTTAGGGTTAGGGTT
AGGGCTAGGGCTAGGAGGGAGAGGGAAGGGATGATGGATGCACCTGGACC
GTGGATGGCTATCGTACACAACCCATCGTAATCGGTGCCTGTGGCTTTTG
GACCTGTCGAATCAAAGCGCACTCACGGGGTCCCTCCCTCTCTCCCTCCC
TCCCTCCTTCCCTCCCTCCCTCCTTGGGTCCTCTCTAGCTCCCCCTCCCC
TTATTGAGGGCGTCAAACCCTCCACGTTGCCGCCGCAGGTCAGTGCTCGA
CTCCTTGCACGGCCCCTCTTTTTTACCCCCCTCTTTTCTTGTCGATCGCT
CTCACCCTCTCTTTTTTGATTTTCTTTCCCTCTCTATCATCCCCCCCAGC
AGCAGAAATCAAGGGGCGGAGAGGCCTATGGTCTTCTCGGCCTCCTCTCC
GTCATTCGCATGACAGATCCGGACCTCAACACCCTAGCCTTAGGTGCCTA
CCCTCCACCCTTCCCCCCTTTCTCCCTCCCTCCCTCCCCCTCCCGCCTCC
TCCTTCCTGTTCTCCTTCCGCTCGTAGACCCTCCCTTTGCCGCACCCCTT
GAAGCCCTTCTCCACGGCCCTTTCACCCTCCCTCCCTGTCTCCTTCTCTC
CCGCCTTTGCGCAGGGAGCGACCTGACCACCTTGGGGCTCAACCTGAACG
CCACGGAGGCCCTGTATGCCACCTTCGCCTCTCCCTGGGCGGAGACACCC
ACCACGAGGGAGCCCAAGTTCTTCCTACCCCCCTGCTACAATCTGCAAAA
GCAATGTAATACCACCTCAGCCCTTAAATATTTGCAGTCACTCCTCCCTC
CCTCCCGCCCTTCCTTCCTCTCCCACCTCTTATCTCTGTCAGCATGTTTG
TCTCGCCTCCGCAATGCTGTTCCCTGTGCCCTGACCTCCCTCCCTCCGCC
CCTTCTTTCCCTCCTTCGACTAGCCCTAA

Coding sequence (CDS) from alignment at CM002461.1:59039..60517-

>rna3307 ID=rna3307|Name=rna3307|organism=Nannochloropsis gaditana|type=CDS|length=3549bp|location=Sequence derived from alignment at CM002461.1:59039..60517- (Nannochloropsis gaditana)
CCCTAATTCTTCCTACCCCCCTGCTACAATCTGCAAAAGCAATGGAGCGA
CCTGACCACCTTGGGGCTCAACCTGAACGCCACGGAGGCCCTCAGCAGAA
ATCAAGGGGCGGAGAGGCCTATGGTCTTCTCGGCCTCCTCTCCGTCATTC
GCATGACAGATCCGGACCTCAACACCCTAGCCTTAGCTCCCCCTCCCCTT
ATTGAGGGCGTCAAACCCTCCACGTTGCCGCCGCAGGTGCCTTTGCCATC
CAACAGGAAGATTTTCCGGCCCTACCTGGAAGCGAAGGAGGAGGAGGGCG
GGAGGGAGGTGCTGGGGGAGGAGGGGGACAGGTGCAGCAGGTCCCACGGC
AGCAACAACCACAACAACAACAACAACAACAACAACAACCACAGCAACAA
CCACAGCAACAACAACAACAACCTCAGCAACAGCAACAACAACAGCAACA
GCCGTCGTCAGATGGGGCCGGTCGATGTTCCAGGGACCATCGCGGGAGCC
CCGGGAGCCCTAATTCTTCCTACCCCCCTGCTACAATCTGCAAAAGCAAT
GGAGCGACCTGACCACCTTGGGGCTCAACCTGAACGCCACGGAGGCCCTC
AGCAGAAATCAAGGGGCGGAGAGGCCTATGGTCTTCTCGGCCTCCTCTCC
GTCATTCGCATGACAGATCCGGACCTCAACACCCTAGCCTTAGCTCCCCC
TCCCCTTATTGAGGGCGTCAAACCCTCCACGTTGCCGCCGCAGGTGCCTT
TGCCATCCAACAGGAAGATTTTCCGGCCCTACCTGGAAGCGAAGGAGGAG
GAGGGCGGGAGGGAGGTGCTGGGGGAGGAGGGGGACAGGTGCAGCAGGTC
CCACGGCAGCAACAACCACAACAACAACAACAACAACAACAACAACCACA
GCAACAACCACAGCAACAACAACAACAACCTCAGCAACAGCAACAACAAC
AGCAACAGCCGTCGTCAGATGGGGCCGGTCGATGTTCCAGGGACCATCGC
GGGAGCCCCGGGAGCCCTAATTCTTCCTACCCCCCTGCTACAATCTGCAA
AAGCAATGGAGCGACCTGACCACCTTGGGGCTCAACCTGAACGCCACGGA
GGCCCTCAGCAGAAATCAAGGGGCGGAGAGGCCTATGGTCTTCTCGGCCT
CCTCTCCGTCATTCGCATGACAGATCCGGACCTCAACACCCTAGCCTTAG
CTCCCCCTCCCCTTATTGAGGGCGTCAAACCCTCCACGTTGCCGCCGCAG
GTGCCTTTGCCATCCAACAGGAAGATTTTCCGGCCCTACCTGGAAGCGAA
GGAGGAGGAGGGCGGGAGGGAGGTGCTGGGGGAGGAGGGGGACAGGTGCA
GCAGGTCCCACGGCAGCAACAACCACAACAACAACAACAACAACAACAAC
AACCACAGCAACAACCACAGCAACAACAACAACAACCTCAGCAACAGCAA
CAACAACAGCAACAGCCGTCGTCAGATGGGGCCGGTCGATGTTCCAGGGA
CCATCGCGGGAGCCCCGGGAGCCCTAATTCTTCCTACCCCCCTGCTACAA
TCTGCAAAAGCAATGGAGCGACCTGACCACCTTGGGGCTCAACCTGAACG
CCACGGAGGCCCTCAGCAGAAATCAAGGGGCGGAGAGGCCTATGGTCTTC
TCGGCCTCCTCTCCGTCATTCGCATGACAGATCCGGACCTCAACACCCTA
GCCTTAGCTCCCCCTCCCCTTATTGAGGGCGTCAAACCCTCCACGTTGCC
GCCGCAGGTGCCTTTGCCATCCAACAGGAAGATTTTCCGGCCCTACCTGG
AAGCGAAGGAGGAGGAGGGCGGGAGGGAGGTGCTGGGGGAGGAGGGGGAC
AGGTGCAGCAGGTCCCACGGCAGCAACAACCACAACAACAACAACAACAA
CAACAACAACCACAGCAACAACCACAGCAACAACAACAACAACCTCAGCA
ACAGCAACAACAACAGCAACAGCCGTCGTCAGATGGGGCCGGTCGATGTT
CCAGGGACCATCGCGGGAGCCCCGGGAGCCCTAATTCTTCCTACCCCCCT
GCTACAATCTGCAAAAGCAATGGAGCGACCTGACCACCTTGGGGCTCAAC
CTGAACGCCACGGAGGCCCTCAGCAGAAATCAAGGGGCGGAGAGGCCTAT
GGTCTTCTCGGCCTCCTCTCCGTCATTCGCATGACAGATCCGGACCTCAA
CACCCTAGCCTTAGCTCCCCCTCCCCTTATTGAGGGCGTCAAACCCTCCA
CGTTGCCGCCGCAGGTGCCTTTGCCATCCAACAGGAAGATTTTCCGGCCC
TACCTGGAAGCGAAGGAGGAGGAGGGCGGGAGGGAGGTGCTGGGGGAGGA
GGGGGACAGGTGCAGCAGGTCCCACGGCAGCAACAACCACAACAACAACA
ACAACAACAACAACAACCACAGCAACAACCACAGCAACAACAACAACAAC
CTCAGCAACAGCAACAACAACAGCAACAGCCGTCGTCAGATGGGGCCGGT
CGATGTTCCAGGGACCATCGCGGGAGCCCCGGGAGCCCTAATTCTTCCTA
CCCCCCTGCTACAATCTGCAAAAGCAATGGAGCGACCTGACCACCTTGGG
GCTCAACCTGAACGCCACGGAGGCCCTCAGCAGAAATCAAGGGGCGGAGA
GGCCTATGGTCTTCTCGGCCTCCTCTCCGTCATTCGCATGACAGATCCGG
ACCTCAACACCCTAGCCTTAGCTCCCCCTCCCCTTATTGAGGGCGTCAAA
CCCTCCACGTTGCCGCCGCAGGTGCCTTTGCCATCCAACAGGAAGATTTT
CCGGCCCTACCTGGAAGCGAAGGAGGAGGAGGGCGGGAGGGAGGTGCTGG
GGGAGGAGGGGGACAGGTGCAGCAGGTCCCACGGCAGCAACAACCACAAC
AACAACAACAACAACAACAACAACCACAGCAACAACCACAGCAACAACAA
CAACAACCTCAGCAACAGCAACAACAACAGCAACAGCCGTCGTCAGATGG
GGCCGGTCGATGTTCCAGGGACCATCGCGGGAGCCCCGGGAGCCCTAATT
CTTCCTACCCCCCTGCTACAATCTGCAAAAGCAATGGAGCGACCTGACCA
CCTTGGGGCTCAACCTGAACGCCACGGAGGCCCTCAGCAGAAATCAAGGG
GCGGAGAGGCCTATGGTCTTCTCGGCCTCCTCTCCGTCATTCGCATGACA
GATCCGGACCTCAACACCCTAGCCTTAGCTCCCCCTCCCCTTATTGAGGG
CGTCAAACCCTCCACGTTGCCGCCGCAGGTGCCTTTGCCATCCAACAGGA
AGATTTTCCGGCCCTACCTGGAAGCGAAGGAGGAGGAGGGCGGGAGGGAG
GTGCTGGGGGAGGAGGGGGACAGGTGCAGCAGGTCCCACGGCAGCAACAA
CCACAACAACAACAACAACAACAACAACAACCACAGCAACAACCACAGCA
ACAACAACAACAACCTCAGCAACAGCAACAACAACAGCAACAGCCGTCGT
CAGATGGGGCCGGTCGATGTTCCAGGGACCATCGCGGGAGCCCCGGGAG

Synonyms

Publications