EWM27375.1, cds3298 (CDS) Nannochloropsis gaditana

Overview
NameEWM27375.1
Unique Namecds3298
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:60472..60517 -
Alignment locationCM002461.1:60079..60303 -
Alignment locationCM002461.1:59730..59779 -
Alignment locationCM002461.1:59525..59618 -
Alignment locationCM002461.1:59305..59353 -
Alignment locationCM002461.1:59213..59249 -
Alignment locationCM002461.1:59039..59044 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27375.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101709g1.1338.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:60472..60517 -
CM002461.1supercontigCM002461.1:60079..60303 -
CM002461.1supercontigCM002461.1:59730..59779 -
CM002461.1supercontigCM002461.1:59525..59618 -
CM002461.1supercontigCM002461.1:59305..59353 -
CM002461.1supercontigCM002461.1:59213..59249 -
CM002461.1supercontigCM002461.1:59039..59044 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
Homology
BLAST of EWM27375.1 vs. NCBI_GenBank
Match: gi|585109599|gb|EWM27375.1| (hypothetical protein Naga_101709g1 [Nannochloropsis gaditana])

HSP 1 Score: 311.227 bits (796), Expect = 8.120e-107
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0
Query:    1 MGPVDVPGTIAGAPGGAFAIQQEDFPALPGSEGGGGREGGAGGGGGQVQQVPRQQQPQQQQQQQQQPQQQPQQQQQQPQQQQQQQQQPSSAPPPLIEGVKPSTLPPQQQKSRGGEAYGLLGLLSVIRMTDPDLNTLALGSDLTTLGLNLNATEALSSYPPATICKSNP 168
            MGPVDVPGTIAGAPGGAFAIQQEDFPALPGSEGGGGREGGAGGGGGQVQQVPRQQQPQQQQQQQQQPQQQPQQQQQQPQQQQQQQQQPSSAPPPLIEGVKPSTLPPQQQKSRGGEAYGLLGLLSVIRMTDPDLNTLALGSDLTTLGLNLNATEALSSYPPATICKSNP
Sbjct:    1 MGPVDVPGTIAGAPGGAFAIQQEDFPALPGSEGGGGREGGAGGGGGQVQQVPRQQQPQQQQQQQQQPQQQPQQQQQQPQQQQQQQQQPSSAPPPLIEGVKPSTLPPQQQKSRGGEAYGLLGLLSVIRMTDPDLNTLALGSDLTTLGLNLNATEALSSYPPATICKSNP 168          
BLAST of EWM27375.1 vs. NCBI_GenBank
Match: gi|1111111541|ref|XP_019247588.1| (PREDICTED: probable NOT transcription complex subunit VIP2 isoform X2 [Nicotiana attenuata])

HSP 1 Score: 73.559 bits (179), Expect = 3.430e-12
Identity = 72/185 (38.92%), Postives = 85/185 (45.95%), Query Frame = 0
Query:   18 FAIQQEDFPALPGSEGGGGREGGAGGGGGQVQQVPRQQQPQQQQQQQQQPQQQP-----QQQQQQPQQQQQQQQQPSSAPPPLIEGVKPSTLPPQ-------------------------QQKSRGGEAY-----------------GLLGLLSVIRMTDPDLNTLALGSDLTTLGLNLNATEAL 155
            F+IQ EDFPALPG +GG       G    Q +Q+        QQQQ    +             + QQQQQQQ  PSS  PP I G++P   P                           QQ S  G+ Y                 G+LGLLSVIRM+DPDL +LALG DLTTLGLNLN+TE L
Sbjct:  312 FSIQNEDFPALPGFKGG---NADYGMDLHQKEQLHDNTLSMMQQQQFSMGRSGGFNLGGTYSSLRNQQQQQQQHAPSSGGPPGI-GLRPLNSPSTVSGIGSYDQLIQQYQQHQSQSQFRLQQMSALGQPYRDQGMKSMQAQATPDPFGMLGLLSVIRMSDPDLTSLALGIDLTTLGLNLNSTENL 492          
BLAST of EWM27375.1 vs. NCBI_GenBank
Match: gi|1149747278|ref|XP_020196537.1| (probable NOT transcription complex subunit VIP2 isoform X2 [Aegilops tauschii subsp. tauschii])

HSP 1 Score: 73.559 bits (179), Expect = 3.626e-12
Identity = 63/195 (32.31%), Postives = 78/195 (40.00%), Query Frame = 0
Query:   18 FAIQQEDFPALPGSEGGGGREGGAGGGGGQVQQVPRQQQPQQQQQQQQQPQQQPQQ-----------QQQQPQQQQQQQQQPSSAPPPLIEGVKPSTLPPQQQKSRGGEA----------------------------------------------YGLLGLLSVIRMTDPDLNTLALGSDLTTLGLNLNATEAL 155
            F+IQ EDFPALPG +GG                 P +   ++Q  +     Q PQ               QP +QQ QQ   +S+  P   G++P  L  Q Q S  G                                                YGLLGLL VIRM DPDL++LALG DLTTLGLNLN+ + L
Sbjct:  302 FSIQNEDFPALPGFKGGS-------------SDYPMELHHKEQLHENVPVMQAPQYPMSRSVGFNLGSNYQPNRQQHQQGAANSSGGPQNIGLRP--LNSQSQTSSLGSYEQLLQQYQQPQTQSPFRLQQMSSSAAQTYADHGLKPILGGRTPPDPYGLLGLLGVIRMNDPDLSSLALGIDLTTLGLNLNSPDNL 481          
BLAST of EWM27375.1 vs. NCBI_GenBank
Match: gi|929753493|ref|XP_014151729.1| (hypothetical protein SARC_09722 [Sphaeroforma arctica JP610] >gi|906945952|gb|KNC77827.1| hypothetical protein SARC_09722 [Sphaeroforma arctica JP610])

HSP 1 Score: 72.0182 bits (175), Expect = 5.044e-12
Identity = 57/147 (38.78%), Postives = 66/147 (44.90%), Query Frame = 0
Query:   18 FAIQQEDFPALPGSEGGGGREGGAGGGGGQVQQVPRQQQPQQQQQQQQQ----PQQQPQQQQQQPQQQQQQQQQPSSAPPPLIEGVKPS-----TLPPQQQKSRGGEAYGLLGLLSVIRMTDPDLNTLALGSDLTTLGLNLNATEAL 155
            F +Q EDFPALP    G                   QQ    +  Q+       Q QP    Q P   +    +   +     EG  PS         QQ  S G + YGLLGLL VIRMTD D NTLALG DLTTLGL+LN+ E L
Sbjct:   11 FNLQNEDFPALPAQTSG------------------YQQDASSKNNQEVSLGPISQTQPSSHDQVPVGDRNALDRYIQSN---YEGTAPSEGQQLHAQQQQTFSNGSDRYGLLGLLGVIRMTDRDTNTLALGIDLTTLGLDLNSPEML 136          
BLAST of EWM27375.1 vs. NCBI_GenBank
Match: gi|1098725887|ref|XP_018805271.1| (PREDICTED: probable NOT transcription complex subunit VIP2 isoform X2 [Juglans regia])

HSP 1 Score: 72.0182 bits (175), Expect = 1.141e-11
Identity = 35/50 (70.00%), Postives = 39/50 (78.00%), Query Frame = 0
Query:  106 PQQQKSRGGEAYGLLGLLSVIRMTDPDLNTLALGSDLTTLGLNLNATEAL 155
            P Q      + YGLLGLLSVIRM+DPDL +LALG DLTTLGLNLN+TE L
Sbjct:  444 PMQAAQSSTDPYGLLGLLSVIRMSDPDLTSLALGIDLTTLGLNLNSTENL 493          
BLAST of EWM27375.1 vs. NCBI_GenBank
Match: gi|1098725890|ref|XP_018805280.1| (PREDICTED: probable NOT transcription complex subunit VIP2 isoform X3 [Juglans regia])

HSP 1 Score: 72.0182 bits (175), Expect = 1.159e-11
Identity = 35/50 (70.00%), Postives = 39/50 (78.00%), Query Frame = 0
Query:  106 PQQQKSRGGEAYGLLGLLSVIRMTDPDLNTLALGSDLTTLGLNLNATEAL 155
            P Q      + YGLLGLLSVIRM+DPDL +LALG DLTTLGLNLN+TE L
Sbjct:  433 PMQAAQSSTDPYGLLGLLSVIRMSDPDLTSLALGIDLTTLGLNLNSTENL 482          
BLAST of EWM27375.1 vs. NCBI_GenBank
Match: gi|1098725884|ref|XP_018805264.1| (PREDICTED: probable NOT transcription complex subunit VIP2 isoform X1 [Juglans regia])

HSP 1 Score: 72.0182 bits (175), Expect = 1.235e-11
Identity = 35/50 (70.00%), Postives = 39/50 (78.00%), Query Frame = 0
Query:  106 PQQQKSRGGEAYGLLGLLSVIRMTDPDLNTLALGSDLTTLGLNLNATEAL 155
            P Q      + YGLLGLLSVIRM+DPDL +LALG DLTTLGLNLN+TE L
Sbjct:  482 PMQAAQSSTDPYGLLGLLSVIRMSDPDLTSLALGIDLTTLGLNLNSTENL 531          
BLAST of EWM27375.1 vs. NCBI_GenBank
Match: gi|698499533|ref|XP_009795583.1| (PREDICTED: probable NOT transcription complex subunit VIP2 isoform X2 [Nicotiana sylvestris])

HSP 1 Score: 72.0182 bits (175), Expect = 1.383e-11
Identity = 71/185 (38.38%), Postives = 84/185 (45.41%), Query Frame = 0
Query:   18 FAIQQEDFPALPGSEGGGGREGGAGGGGGQVQQVPRQQQPQQQQQQQQQPQQQP-----QQQQQQPQQQQQQQQQPSSAPPPLIEGVKPSTLPPQ-------------------------QQKSRGGEAY-----------------GLLGLLSVIRMTDPDLNTLALGSDLTTLGLNLNATEAL 155
            F+IQ EDFPALPG +GG       G    Q +Q+        QQQQ    +             + QQQQQQQ  PSS  PP I G++P   P                           QQ S  G+ Y                 G+LGLLSVIRM+DPDL +LALG DLTTLGLNLN+ E L
Sbjct:  312 FSIQNEDFPALPGFKGG---NADYGMDLHQKEQLHDNTLSMMQQQQFSMGRSGGFNLGGTYSSLRTQQQQQQQHAPSSGGPPGI-GLRPLNSPSTVSGIGSYDQLIQQYQQHQSKSQFRLQQMSALGQPYRDQGMKSMQAQATPDPFGMLGLLSVIRMSDPDLTSLALGIDLTTLGLNLNSAENL 492          
BLAST of EWM27375.1 vs. NCBI_GenBank
Match: gi|1025275694|ref|XP_016494159.1| (PREDICTED: probable NOT transcription complex subunit VIP2 isoform X2 [Nicotiana tabacum])

HSP 1 Score: 71.633 bits (174), Expect = 1.567e-11
Identity = 71/185 (38.38%), Postives = 84/185 (45.41%), Query Frame = 0
Query:   18 FAIQQEDFPALPGSEGGGGREGGAGGGGGQVQQVPRQQQPQQQQQQQQQPQQQP-----QQQQQQPQQQQQQQQQPSSAPPPLIEGVKPSTLPPQ-------------------------QQKSRGGEAY-----------------GLLGLLSVIRMTDPDLNTLALGSDLTTLGLNLNATEAL 155
            F+IQ EDFPALPG +GG       G    Q +Q+        QQQQ    +             + QQQQQQQ  PSS  PP I G++P   P                           QQ S  G+ Y                 G+LGLLSVIRM+DPDL +LALG DLTTLGLNLN+ E L
Sbjct:  313 FSIQNEDFPALPGFKGG---NADYGMDLHQKEQLHDNTLSMMQQQQFSMGRSGGFNLGGTYSSLRTQQQQQQQHAPSSGGPPGI-GLRPLNSPSTVSGIGSYDQLIQQYQQHQSQSQFRLQQMSALGQPYRDQGMKSMQAQATPDPFGMLGLLSVIRMSDPDLTSLALGIDLTTLGLNLNSAENL 493          
BLAST of EWM27375.1 vs. NCBI_GenBank
Match: gi|971515402|dbj|GAQ82768.1| (transcription factor [Klebsormidium nitens])

HSP 1 Score: 70.4774 bits (171), Expect = 4.495e-11
Identity = 32/41 (78.05%), Postives = 37/41 (90.24%), Query Frame = 0
Query:  115 EAYGLLGLLSVIRMTDPDLNTLALGSDLTTLGLNLNATEAL 155
            + +GLLGLLSVIRM+DPDL TLALG+DLTTLGLNLN+ E L
Sbjct:  442 DRFGLLGLLSVIRMSDPDLTTLALGTDLTTLGLNLNSRENL 482          
The following BLAST results are available for this feature:
BLAST of EWM27375.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109599|gb|EWM27375.1|8.120e-107100.00hypothetical protein Naga_101709g1 [Nannochloropsi... [more]
gi|1111111541|ref|XP_019247588.1|3.430e-1238.92PREDICTED: probable NOT transcription complex subu... [more]
gi|1149747278|ref|XP_020196537.1|3.626e-1232.31probable NOT transcription complex subunit VIP2 is... [more]
gi|929753493|ref|XP_014151729.1|5.044e-1238.78hypothetical protein SARC_09722 [Sphaeroforma arct... [more]
gi|1098725887|ref|XP_018805271.1|1.141e-1170.00PREDICTED: probable NOT transcription complex subu... [more]
gi|1098725890|ref|XP_018805280.1|1.159e-1170.00PREDICTED: probable NOT transcription complex subu... [more]
gi|1098725884|ref|XP_018805264.1|1.235e-1170.00PREDICTED: probable NOT transcription complex subu... [more]
gi|698499533|ref|XP_009795583.1|1.383e-1138.38PREDICTED: probable NOT transcription complex subu... [more]
gi|1025275694|ref|XP_016494159.1|1.567e-1138.38PREDICTED: probable NOT transcription complex subu... [more]
gi|971515402|dbj|GAQ82768.1|4.495e-1178.05transcription factor [Klebsormidium nitens][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3307rna3307Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications