EWM27375.1, cds3298 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27375.1 vs. NCBI_GenBank
Match: gi|585109599|gb|EWM27375.1| (hypothetical protein Naga_101709g1 [Nannochloropsis gaditana]) HSP 1 Score: 311.227 bits (796), Expect = 8.120e-107 Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0 Query: 1 MGPVDVPGTIAGAPGGAFAIQQEDFPALPGSEGGGGREGGAGGGGGQVQQVPRQQQPQQQQQQQQQPQQQPQQQQQQPQQQQQQQQQPSSAPPPLIEGVKPSTLPPQQQKSRGGEAYGLLGLLSVIRMTDPDLNTLALGSDLTTLGLNLNATEALSSYPPATICKSNP 168 MGPVDVPGTIAGAPGGAFAIQQEDFPALPGSEGGGGREGGAGGGGGQVQQVPRQQQPQQQQQQQQQPQQQPQQQQQQPQQQQQQQQQPSSAPPPLIEGVKPSTLPPQQQKSRGGEAYGLLGLLSVIRMTDPDLNTLALGSDLTTLGLNLNATEALSSYPPATICKSNP Sbjct: 1 MGPVDVPGTIAGAPGGAFAIQQEDFPALPGSEGGGGREGGAGGGGGQVQQVPRQQQPQQQQQQQQQPQQQPQQQQQQPQQQQQQQQQPSSAPPPLIEGVKPSTLPPQQQKSRGGEAYGLLGLLSVIRMTDPDLNTLALGSDLTTLGLNLNATEALSSYPPATICKSNP 168
BLAST of EWM27375.1 vs. NCBI_GenBank
Match: gi|1111111541|ref|XP_019247588.1| (PREDICTED: probable NOT transcription complex subunit VIP2 isoform X2 [Nicotiana attenuata]) HSP 1 Score: 73.559 bits (179), Expect = 3.430e-12 Identity = 72/185 (38.92%), Postives = 85/185 (45.95%), Query Frame = 0 Query: 18 FAIQQEDFPALPGSEGGGGREGGAGGGGGQVQQVPRQQQPQQQQQQQQQPQQQP-----QQQQQQPQQQQQQQQQPSSAPPPLIEGVKPSTLPPQ-------------------------QQKSRGGEAY-----------------GLLGLLSVIRMTDPDLNTLALGSDLTTLGLNLNATEAL 155 F+IQ EDFPALPG +GG G Q +Q+ QQQQ + + QQQQQQQ PSS PP I G++P P QQ S G+ Y G+LGLLSVIRM+DPDL +LALG DLTTLGLNLN+TE L Sbjct: 312 FSIQNEDFPALPGFKGG---NADYGMDLHQKEQLHDNTLSMMQQQQFSMGRSGGFNLGGTYSSLRNQQQQQQQHAPSSGGPPGI-GLRPLNSPSTVSGIGSYDQLIQQYQQHQSQSQFRLQQMSALGQPYRDQGMKSMQAQATPDPFGMLGLLSVIRMSDPDLTSLALGIDLTTLGLNLNSTENL 492
BLAST of EWM27375.1 vs. NCBI_GenBank
Match: gi|1149747278|ref|XP_020196537.1| (probable NOT transcription complex subunit VIP2 isoform X2 [Aegilops tauschii subsp. tauschii]) HSP 1 Score: 73.559 bits (179), Expect = 3.626e-12 Identity = 63/195 (32.31%), Postives = 78/195 (40.00%), Query Frame = 0 Query: 18 FAIQQEDFPALPGSEGGGGREGGAGGGGGQVQQVPRQQQPQQQQQQQQQPQQQPQQ-----------QQQQPQQQQQQQQQPSSAPPPLIEGVKPSTLPPQQQKSRGGEA----------------------------------------------YGLLGLLSVIRMTDPDLNTLALGSDLTTLGLNLNATEAL 155 F+IQ EDFPALPG +GG P + ++Q + Q PQ QP +QQ QQ +S+ P G++P L Q Q S G YGLLGLL VIRM DPDL++LALG DLTTLGLNLN+ + L Sbjct: 302 FSIQNEDFPALPGFKGGS-------------SDYPMELHHKEQLHENVPVMQAPQYPMSRSVGFNLGSNYQPNRQQHQQGAANSSGGPQNIGLRP--LNSQSQTSSLGSYEQLLQQYQQPQTQSPFRLQQMSSSAAQTYADHGLKPILGGRTPPDPYGLLGLLGVIRMNDPDLSSLALGIDLTTLGLNLNSPDNL 481
BLAST of EWM27375.1 vs. NCBI_GenBank
Match: gi|929753493|ref|XP_014151729.1| (hypothetical protein SARC_09722 [Sphaeroforma arctica JP610] >gi|906945952|gb|KNC77827.1| hypothetical protein SARC_09722 [Sphaeroforma arctica JP610]) HSP 1 Score: 72.0182 bits (175), Expect = 5.044e-12 Identity = 57/147 (38.78%), Postives = 66/147 (44.90%), Query Frame = 0 Query: 18 FAIQQEDFPALPGSEGGGGREGGAGGGGGQVQQVPRQQQPQQQQQQQQQ----PQQQPQQQQQQPQQQQQQQQQPSSAPPPLIEGVKPS-----TLPPQQQKSRGGEAYGLLGLLSVIRMTDPDLNTLALGSDLTTLGLNLNATEAL 155 F +Q EDFPALP G QQ + Q+ Q QP Q P + + + EG PS QQ S G + YGLLGLL VIRMTD D NTLALG DLTTLGL+LN+ E L Sbjct: 11 FNLQNEDFPALPAQTSG------------------YQQDASSKNNQEVSLGPISQTQPSSHDQVPVGDRNALDRYIQSN---YEGTAPSEGQQLHAQQQQTFSNGSDRYGLLGLLGVIRMTDRDTNTLALGIDLTTLGLDLNSPEML 136
BLAST of EWM27375.1 vs. NCBI_GenBank
Match: gi|1098725887|ref|XP_018805271.1| (PREDICTED: probable NOT transcription complex subunit VIP2 isoform X2 [Juglans regia]) HSP 1 Score: 72.0182 bits (175), Expect = 1.141e-11 Identity = 35/50 (70.00%), Postives = 39/50 (78.00%), Query Frame = 0 Query: 106 PQQQKSRGGEAYGLLGLLSVIRMTDPDLNTLALGSDLTTLGLNLNATEAL 155 P Q + YGLLGLLSVIRM+DPDL +LALG DLTTLGLNLN+TE L Sbjct: 444 PMQAAQSSTDPYGLLGLLSVIRMSDPDLTSLALGIDLTTLGLNLNSTENL 493
BLAST of EWM27375.1 vs. NCBI_GenBank
Match: gi|1098725890|ref|XP_018805280.1| (PREDICTED: probable NOT transcription complex subunit VIP2 isoform X3 [Juglans regia]) HSP 1 Score: 72.0182 bits (175), Expect = 1.159e-11 Identity = 35/50 (70.00%), Postives = 39/50 (78.00%), Query Frame = 0 Query: 106 PQQQKSRGGEAYGLLGLLSVIRMTDPDLNTLALGSDLTTLGLNLNATEAL 155 P Q + YGLLGLLSVIRM+DPDL +LALG DLTTLGLNLN+TE L Sbjct: 433 PMQAAQSSTDPYGLLGLLSVIRMSDPDLTSLALGIDLTTLGLNLNSTENL 482
BLAST of EWM27375.1 vs. NCBI_GenBank
Match: gi|1098725884|ref|XP_018805264.1| (PREDICTED: probable NOT transcription complex subunit VIP2 isoform X1 [Juglans regia]) HSP 1 Score: 72.0182 bits (175), Expect = 1.235e-11 Identity = 35/50 (70.00%), Postives = 39/50 (78.00%), Query Frame = 0 Query: 106 PQQQKSRGGEAYGLLGLLSVIRMTDPDLNTLALGSDLTTLGLNLNATEAL 155 P Q + YGLLGLLSVIRM+DPDL +LALG DLTTLGLNLN+TE L Sbjct: 482 PMQAAQSSTDPYGLLGLLSVIRMSDPDLTSLALGIDLTTLGLNLNSTENL 531
BLAST of EWM27375.1 vs. NCBI_GenBank
Match: gi|698499533|ref|XP_009795583.1| (PREDICTED: probable NOT transcription complex subunit VIP2 isoform X2 [Nicotiana sylvestris]) HSP 1 Score: 72.0182 bits (175), Expect = 1.383e-11 Identity = 71/185 (38.38%), Postives = 84/185 (45.41%), Query Frame = 0 Query: 18 FAIQQEDFPALPGSEGGGGREGGAGGGGGQVQQVPRQQQPQQQQQQQQQPQQQP-----QQQQQQPQQQQQQQQQPSSAPPPLIEGVKPSTLPPQ-------------------------QQKSRGGEAY-----------------GLLGLLSVIRMTDPDLNTLALGSDLTTLGLNLNATEAL 155 F+IQ EDFPALPG +GG G Q +Q+ QQQQ + + QQQQQQQ PSS PP I G++P P QQ S G+ Y G+LGLLSVIRM+DPDL +LALG DLTTLGLNLN+ E L Sbjct: 312 FSIQNEDFPALPGFKGG---NADYGMDLHQKEQLHDNTLSMMQQQQFSMGRSGGFNLGGTYSSLRTQQQQQQQHAPSSGGPPGI-GLRPLNSPSTVSGIGSYDQLIQQYQQHQSKSQFRLQQMSALGQPYRDQGMKSMQAQATPDPFGMLGLLSVIRMSDPDLTSLALGIDLTTLGLNLNSAENL 492
BLAST of EWM27375.1 vs. NCBI_GenBank
Match: gi|1025275694|ref|XP_016494159.1| (PREDICTED: probable NOT transcription complex subunit VIP2 isoform X2 [Nicotiana tabacum]) HSP 1 Score: 71.633 bits (174), Expect = 1.567e-11 Identity = 71/185 (38.38%), Postives = 84/185 (45.41%), Query Frame = 0 Query: 18 FAIQQEDFPALPGSEGGGGREGGAGGGGGQVQQVPRQQQPQQQQQQQQQPQQQP-----QQQQQQPQQQQQQQQQPSSAPPPLIEGVKPSTLPPQ-------------------------QQKSRGGEAY-----------------GLLGLLSVIRMTDPDLNTLALGSDLTTLGLNLNATEAL 155 F+IQ EDFPALPG +GG G Q +Q+ QQQQ + + QQQQQQQ PSS PP I G++P P QQ S G+ Y G+LGLLSVIRM+DPDL +LALG DLTTLGLNLN+ E L Sbjct: 313 FSIQNEDFPALPGFKGG---NADYGMDLHQKEQLHDNTLSMMQQQQFSMGRSGGFNLGGTYSSLRTQQQQQQQHAPSSGGPPGI-GLRPLNSPSTVSGIGSYDQLIQQYQQHQSQSQFRLQQMSALGQPYRDQGMKSMQAQATPDPFGMLGLLSVIRMSDPDLTSLALGIDLTTLGLNLNSAENL 493
BLAST of EWM27375.1 vs. NCBI_GenBank
Match: gi|971515402|dbj|GAQ82768.1| (transcription factor [Klebsormidium nitens]) HSP 1 Score: 70.4774 bits (171), Expect = 4.495e-11 Identity = 32/41 (78.05%), Postives = 37/41 (90.24%), Query Frame = 0 Query: 115 EAYGLLGLLSVIRMTDPDLNTLALGSDLTTLGLNLNATEAL 155 + +GLLGLLSVIRM+DPDL TLALG+DLTTLGLNLN+ E L Sbjct: 442 DRFGLLGLLSVIRMSDPDLTTLALGTDLTTLGLNLNSRENL 482 The following BLAST results are available for this feature:
BLAST of EWM27375.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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