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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100438g1.1494.mrna |
| Orig protein id | gnl|cribi|Naga_100438g1.1494 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 1; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002461.1 | supercontig | CM002461.1:57569..58705 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna3305 ID=rna3305|Name=rna3305|organism=Nannochloropsis gaditana|type=mRNA|length=1539bp
ACCCTGTGGACATCCCATCCACCACCTCCCCCTCTTCTCAATCGCTGTAC
GCACGAATACGGGACGATTCGTGGGGGTGGAAGGGCACGCGATCGCGCGG
TCTCGAGGGGGTAACTTCTCAGACTCGAAGCATGGTGTCGGTTGGCGCCA
GGTGGCAGAGGGAGGAAGATCGGTGTCACGATTTGGGACGTGTCGTTTGC
TCGCATCGTAGCTTTTTTGAAGGTGTCTGGGGGTGCAACGCTGTTTAACA
ACGCTTTGAGTGGTATGGATGGAGTGTTTGGTCGTGTCCGGAGCGTCATG
AAGGAGAGATGTTGTAGATTGACGTCGCATGTCGGGTGATATTCCTTCCT
GTGTTGTATTTCCAAGCGCATCTGTTGCGCCGAAGTGAGGGTGACCCACT
GAATCTCTAGCTTATAGCATTTGACCATCGAAAATCTCTCCCTGTCTATT
TACAAACACCCGGTCGACGATCTCGTGCCAATTGTTTTGTCCCGCAGAGC
CTCTTGCAGGACGAACGGAAACAGTCGTCGGTGTTTAAGTATGAAAACCA
CCGTCAAGGGACTGTTTATCCTCTCCATTTGTTGGCTCCTTGAGATTGGA
AATGGGCTGCCATCTTTCAGGGGTTCTTTGCTTGGAGCGTCGCGGAGACT
TATGGAGGAGGAGGTGGTGGGAGAAAGGTCATCTTTTGACTTACCAGACG
CTGCCCGTAACCTGGCCGCCGAGCAGGTGCCGGGGACCGAGGAGGACGGG
CAGCCGAGCATTAACGAGGTCTTGGACTCTGGCCGGCGGAAGATCAACGG
CTGGCATGGCGTGTGGAATGGGTGGGGATGGACCGCAGTCTCCCCGAATC
CCTGCTGTACAAAGAGCGACAAGGCATCTGAAGATGAGGATGCTTCGCAC
CGTCTGTAATGTCCACCAAGGGGACCGCGAAATGTGGGGAATCTTCGGAT
TTTTTCCCCAACTGGTTGAGTGTCACGCTCGGGGCCAAGTGGAGGCGAAT
CGAGGAGCAAAGAAAGGAAAGGACGGAAGGATGATGACGGAATGTACAGG
TGTTCAAGCCAGATGTGAGACAGAGGGAAAGAAGAGCTGTCGAATAATAA
CTTAGAGCTTGTCTGCAATTTCTGAATTTCTGAAAAGTCGGATGCAAAGG
CATTTCCCAACGCGAGCAAATAATTTTTTGCAAATGAATGCAATAAACGA
CCGATTTTTTGGGAAGACAAATCCGTCAAGTTACTTAATGGGCGATAAAG
ATCTCTCCATCAGGCTGTGCCTGAGTCGCCCCGCGCACGTCAGCTGTCGT
CTCCATGGCGAGCCACCGTCTCCTTAACCCATTCGTCGTGACCACGTGCA
TTCGCCCACCCAAAACGCGCGTGAATGCCCCTCATCTTGTCTAACACCCA
ATCCCGCCACACGAGGCCCTGCATCTTCGATTCGGGATTTCAGAACCGCG
GCGGGGCAGGCTGACCAGGAGAGAGGGATGCAAGCCTCCTCAAGCGAGGC
ATGGAGTCAGCTAATGGGACGTCAAACGATTGGTCGCCG back to topprotein sequence of rna3305 >rna3305-protein ID=rna3305-protein|Name=rna3305|organism=Nannochloropsis gaditana|type=polypeptide|length=140bp
MKERMACVDLGDWSIRSKQPGYGKRATLLPSRTARESFQTSQTYQHLCFL
RLPPGRPEKGEGEGRRVFALREEEGRGRGACQSSSCDNAPGATWNSAGAK
RRSLRARTGKASTTVATRARRRERAFGWVQVVTEVAVFPP back to topmRNA from alignment at CM002461.1:57569..58705+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna3305 ID=rna3305|Name=rna3305|organism=Nannochloropsis gaditana|type=mRNA|length=1137bp|location=Sequence derived from alignment at CM002461.1:57569..58705+ (Nannochloropsis gaditana)
ATGAAGGAGCGCATGGCTTGCGTTGATCTCGGTAGATTTCTTGCCTGAGA
AGATGTAAAGCACtcaacttcctcccttcccgttcTTTCCATCAAGGGGA
CTGGTCGATTCGAAGTAAGCAGCCAGGGTACGGAAAAAGGGCAACGTTGC
TGCCCTCTCGCACCGCACGGGAGTCATTTCAGACTTCTCAGACCTACCAA
cacctctgcttcctccgccttccccccggccgcccagagaagggggaggg
agaagggaggagagtcTTCGcgttgagggaggaggaggggcggggcaggg
gagcaTGCCAATCATCGAGCTGCGACAACGCTCCCGGTACGTTGGAAATA
AAGTTGAGGAAGACCACATGGCAACCACGAACGCTAGCGATAGCGCCCTG
CGTGCACCAGTTGGTCGTCAGGAGTCGGGCCCTGCCGGTATGACTTCTTA
CCCCTTTGCCTCtgtctcccgccttccctgtctACCTTATATCGCCACAG
GGGCTACGTGGAACTCGGCGGGAGCGAAGAGGCGGTCTCtgcgggcgagg
acggggaaggctTCTACCACAGTGGCTAcgcgggcgaggcggcgggaAAG
AGCCTTCGGCTGGGTACAGGTAGTAACCGAGGTCGCTGTTTTCCCTCCAT
AAGCCCTGTCTTTCGCGTGGTATTGATGGAAGAAGCCCTGATTGTCTTCC
CTGCTCATTGCATGAACCCTCCAAGCTTGTTTGCACGGGAAGTGGCTCGC
CCATCCGACCTCCCTTCTGGTGCCCGTGTCCTGCGCCCTCTACCGCCCTC
AGTGCCCTCCATCGGGTTCGCGCCCTACCCTCCTTGACTCAACCCTTggc
tcttccacctcctcatccacgTCCTTGACCTCTCTCCAGCCCCTTTAGGC
GGGGGCGGCCCTTACACCAGCCACTACCAGGACGGCAGCGATGATGATTT
CTCCACCAGTGGACCGCAAGGCCCCGTCGGTACCTGGGCGCGTTTTCGAA
AGACCAGCCGAGAacggtgcctccctccctccctccctccctccctccct
ccctccctcggggcCTAGATACCTGCCGTTCCCtccgccatcctcccttg
tcctcagTTTGGTGTCGCCTGATCGCCGTTACAATGC back to topCoding sequence (CDS) from alignment at CM002461.1:57569..58705+ >rna3305 ID=rna3305|Name=rna3305|organism=Nannochloropsis gaditana|type=CDS|length=1269bp|location=Sequence derived from alignment at CM002461.1:57569..58705+ (Nannochloropsis gaditana)
ATGAAGGAGCGCATGGCTTGCGTTGATCTCGGGGACTGGTCGATTCGAAG
TAAGCAGCCAGGGTACGGAAAAAGGGCAACGTTGCTGCCCTCTCGCACCG
CACGGGAGTCATTTCAGACTTCTCAGACCTACCAAcacctctgcttcctc
cgccttccccccggccgcccagagaagggggagggagaagggaggagagt
cTTCGcgttgagggaggaggaggggcggggcaggggagcaTGCCAATCAT
CGAGCTGCGACAACGCTCCCGGGGCTACGTGGAACTCGGCGGGAGCGAAG
AGGCGGTCTCtgcgggcgaggacggggaaggctTCTACCACAGTGGCTAc
gcgggcgaggcggcgggaAAGAGCCTTCGGCTGGGTACAGGTAGTAACCG
AGGTCGCTGTTTTCCCTCCATAAATGAAGGAGCGCATGGCTTGCGTTGAT
CTCGGGGACTGGTCGATTCGAAGTAAGCAGCCAGGGTACGGAAAAAGGGC
AACGTTGCTGCCCTCTCGCACCGCACGGGAGTCATTTCAGACTTCTCAGA
CCTACCAAcacctctgcttcctccgccttccccccggccgcccagagaag
ggggagggagaagggaggagagtcTTCGcgttgagggaggaggaggggcg
gggcaggggagcaTGCCAATCATCGAGCTGCGACAACGCTCCCGGGGCTA
CGTGGAACTCGGCGGGAGCGAAGAGGCGGTCTCtgcgggcgaggacgggg
aaggctTCTACCACAGTGGCTAcgcgggcgaggcggcgggaAAGAGCCTT
CGGCTGGGTACAGGTAGTAACCGAGGTCGCTGTTTTCCCTCCATAAATGA
AGGAGCGCATGGCTTGCGTTGATCTCGGGGACTGGTCGATTCGAAGTAAG
CAGCCAGGGTACGGAAAAAGGGCAACGTTGCTGCCCTCTCGCACCGCACG
GGAGTCATTTCAGACTTCTCAGACCTACCAAcacctctgcttcctccgcc
ttccccccggccgcccagagaagggggagggagaagggaggagagtcTTC
GcgttgagggaggaggaggggcggggcaggggagcaTGCCAATCATCGAG
CTGCGACAACGCTCCCGGGGCTACGTGGAACTCGGCGGGAGCGAAGAGGC
GGTCTCtgcgggcgaggacggggaaggctTCTACCACAGTGGCTAcgcgg
gcgaggcggcgggaAAGAGCCTTCGGCTGGGTACAGGTAGTAACCGAGGT
CGCTGTTTTCCCTCCATAA back to top
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