EWM27379.1, cds3296 (CDS) Nannochloropsis gaditana

Overview
NameEWM27379.1
Unique Namecds3296
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:57569..57599 +
Alignment locationCM002461.1:57665..57904 +
Alignment locationCM002461.1:58069..58220 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27379.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100438g1.1494.mrna
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:57569..57599 +
CM002461.1supercontigCM002461.1:57665..57904 +
CM002461.1supercontigCM002461.1:58069..58220 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM27379.1 vs. NCBI_GenBank
Match: gi|585109604|gb|EWM27379.1| (hypothetical protein Naga_100438g1 [Nannochloropsis gaditana])

HSP 1 Score: 283.493 bits (724), Expect = 9.418e-97
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0 
Query:    1 MKERMACVDLGDWSIRSKQPGYGKRATLLPSRTARESFQTSQTYQHLCFLRLPPGRPEKGEGEGRRVFALREEEGRGRGACQSSSCDNAPGATWNSAGAKRRSLRARTGKASTTVATRARRRERAFGWVQVVTEVAVFPP 140
            MKERMACVDLGDWSIRSKQPGYGKRATLLPSRTARESFQTSQTYQHLCFLRLPPGRPEKGEGEGRRVFALREEEGRGRGACQSSSCDNAPGATWNSAGAKRRSLRARTGKASTTVATRARRRERAFGWVQVVTEVAVFPP
Sbjct:    1 MKERMACVDLGDWSIRSKQPGYGKRATLLPSRTARESFQTSQTYQHLCFLRLPPGRPEKGEGEGRRVFALREEEGRGRGACQSSSCDNAPGATWNSAGAKRRSLRARTGKASTTVATRARRRERAFGWVQVVTEVAVFPP 140
[Close]
BLAST of EWM27379.1 vs. NCBI_GenBank
Match: gi|585109605|gb|EWM27380.1| (hypothetical protein Naga_100438g1 [Nannochloropsis gaditana])

HSP 1 Score: 147.517 bits (371), Expect = 1.081e-42
Identity = 71/75 (94.67%), Postives = 71/75 (94.67%), Query Frame = 0 
Query:    1 MKERMACVDLGDWSIRSKQPGYGKRATLLPSRTARESFQTSQTYQHLCFLRLPPGRPEKGEGEGRRVFALREEEG 75
            MKERMACVDLGDWSIRSKQPGYGKRATLLPSRTARESFQTSQTYQHLCFLRLPPGRPEKGEGEGRRVFA   E G
Sbjct:    1 MKERMACVDLGDWSIRSKQPGYGKRATLLPSRTARESFQTSQTYQHLCFLRLPPGRPEKGEGEGRRVFAGYVELG 75
The following BLAST results are available for this feature:
BLAST of EWM27379.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585109604|gb|EWM27379.1|9.418e-97100.00hypothetical protein Naga_100438g1 [Nannochloropsi... [more]
gi|585109605|gb|EWM27380.1|1.081e-4294.67hypothetical protein Naga_100438g1 [Nannochloropsi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3305rna3305Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications