rna3304, rna3304 (mRNA) Nannochloropsis gaditana

Overview
Namerna3304
Unique Namerna3304
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1493
Alignment locationCM002461.1:53672..55633 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100438g2.1493.mrna
Orig protein idgnl|cribi|Naga_100438g2.1493
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:53672..55633 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100438g2gene3181Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3304rna3304-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27378.1cds3295Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3304 ID=rna3304|Name=rna3304|organism=Nannochloropsis gaditana|type=mRNA|length=1493bp
AAATGCGCACCATAACGTCAATGGTCCTTGATATGTCTGCACATTTACCA
CTTTTTTTGATCCGTTAGAAAGCTAAGGATGTATCGGTTTGTCTAGGGAA
GCTTTCTTTTCAGAGGAAAAGGCTGGGCAGACACGACCGGCCCTTCCGCT
CGAGATATGATAGACAACGTGCGTCAACATGCATGTAATTGTAAGATACA
TGACAATGAGCATTACTCTTACGGTCGATCCAACTGGGTGCTCACGGCCT
TTTAATGACGATTTCTATACGGAAAACAGGGCACCCGACCATGAAGAGCA
GCCCATCACGCGCGCTTTCCACCGTCGCATATGGCCTTGTCTTCCTTGTT
CCTGTCTTCATCACTGTCATCATAGGCCTCGTCCCGCTCAAAAATTTCCC
CACCAACGATGTTTCTGTGCCACCTTTCAACCTCTTACAACGTGCTAACG
TGACTGAGTACGCACTTCGCAGCGCATCTTTCCCCTCCCTCTTCTATCTC
TTTCTCTCCCTCCCACCGCCTTCCGGGCCATTGCACGGGGAATACCTCGC
GGAGATACTGGATGCAGGCTCGCTTGCTGCCAATGTGCTGGGATGGATTG
GCTTCACCCCCTTTTTTCCCGGAGCGTGGATAGGAAAATCCTTCGTGGAA
GCCACCGATGAAAAGGACGGATGGGGGTATAACGTCTTCAGATGGTTCGG
CGCGCGGCTGGACCGTCGTTTCAAGATGCACACGTGCATCACCACTTCAG
TGTGGGACGGCCGGCCATCGTTTCAGCTGCAATACGCCGGAGAAACCCAC
CTGTTGGGCCGCCTGCGCATGCGAGACGAGGTGCGGGAAATCCAACCGGG
GCTGTACTTGGGGATGGGCACGTTTGGCTACAGCGAAGCGAAACGGCGGG
GCGACCCGTTACCCTTCCTGCTGCGTGGGCCCTATCAAGCACCGGTCCCG
GGGGCGGTGCGCGAGTCCTTTTGGCCCAAGGCCGGTTAAGAAGGCTCGGG
CGCCCAAGTCATCAAACCACGCATGCCGGTGGAGAAAGGCCGGCGGAAAC
CCGTCGTATTCGCTTGGAAGCGAAATGGCAGTAGCGGCGACCAATCGTTT
GACGTCCCATTAGCTGACTCCATGCCTCGCTTGAGGAGGCTTGCATCCCT
CTCTCCTGGTCAGCCTGCCCCGCCGCGGTTCTGAAATCCCGAATCGAAGA
TGCAGGGCCTCGTGTGGCGGGATTGGGTGTTAGACAAGATGAGGGGCATT
CACGCGCGTTTTGGGTGGGCGAATGCACGTGGTCACGACGAATGGGTTAA
GGAGACGGTGGCTCGCCATGGAGACGACAGCTGACGTGCGCGGGGCGACT
CAGGCACAGCCTGATGGAGAGATCTTTATCGCCCATTAAGTAACTTGACG
GATTTGTCTTCCCAAAAAATCGGTCGTTTATTGCATTCATTTGCAAAAAA
TTATTTGCTCGCGTTGGGAAATGCCTTTGCATCCGACTTTTCA
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protein sequence of rna3304

>rna3304-protein ID=rna3304-protein|Name=rna3304|organism=Nannochloropsis gaditana|type=polypeptide|length=167bp
MGCHLSGVLCLERRGDLWRRRWWEKGHLLTYQTLPVTWPPSRCRGPRRTG
SRALTRSWTLAGGRSTAGMACGMGGDGPQSPRIPAVQRATRHLKMRMLRT
VCNVHQGDREMWGIFGFFPQLVECHARGQVEANRGAKKGKDGRMMTECTG
VQARCETEGKKSCRIIT
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mRNA from alignment at CM002461.1:53672..55633-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3304 ID=rna3304|Name=rna3304|organism=Nannochloropsis gaditana|type=mRNA|length=1962bp|location=Sequence derived from alignment at CM002461.1:53672..55633- (Nannochloropsis gaditana)
ACCCTGTGGACATCCCATCCACCACCTCCCCCTCTTCTCAATCGCTGTAC
GCACGAATACGGGACGATTCGTGGGGGTGGAAGGGCACGCGATCGCGCGG
TCTCGAGGGGGTAACTTCTCAGACTCGAAGCATGGTGTCGGTTGGCGCCA
GGTGGCAGAGGGAGGAAGATCGGTGTCACGATTTGGGACGTGTCGTTTGC
TCGCATCGTAGCTTTTTTGAAGGTGTCTGGGGGTGCAACGCTGTTTAACA
ACGCTTTGAGTGGTATGGATGGAGTGTTTGGTCGTGTCCGGAGCGTCATG
AAGGAGAGATGTTGTAGATTGACGTCGCATGTCGGGTGATATTCCTTCCT
GTGTTGTATTTCCAAGCGCATCTGTTGCGCCGAAGTGAGGGTGACCCACT
GAATCTCTAGCTTATAGCATTTGACCATCGAAAATCTCTCCCTGTCTATT
TACAAACACCCGGTCGACGATCTCGTGCCAATTGTTTTGTCCCGCAGAGC
CTCTTGCAGGACGAACGGAAACAGTCGTCGGTGTTTAAGTATGAAAACCA
CCGTCAAGGGACTGTTTATCCTCTCCATTTGTTGGCTCCTTGAGATTGGA
AATGGGCTGCCATCTTTCAGGGGTTCTTTGCTTGGAGCGTCGCGGAGACT
TATGGAGGAGGAGGTGGTGGGAGAAAGGTCATCTTTTGACTTACCAGGCA
AGTGCAGGAAGGAGTGCGGACATGCAAGTCAGGAGGGTTAGGAAGGAGCA
TAAAGAGGTTTTCGGCATAACTTGCTATGCCTTATTCGTTTTTATTCAGC
AATGAGTTTCTCTCGCATTTGCCGACCTTTATATATACCTTTTTCCCCTT
CCCCTTGTCTTCCTCGCCAATTTCCTTCCCTCTCCCTTTCTTCTCCTCCT
CTCTGTTCCCCTGATCTGTGTGTTGCCTTGTCTTTGTTTATCCTTTTCAG
ACGCTGCCCGTAACCTGGCCGCCGAGCAGGTGCCGGGGACCGAGGAGGAC
GGGCAGCCGAGCATTAACGAGGTCTTGGACTCTGGCCGGCGGAAGATCAA
CGGCTGGCATGGCGTGTGGAATGGGTGGGGATGGACCGCAGGTAGGTTTC
TTTTTTTTCCTTGTCTCTGGGAGGAAAGCGTGGAGGATGGGTATATTTTG
TCTTTTATCCTTGTCCCTTGAGGACACACGCACCCCATTCCTCCTTCCCT
GTTGCGGAGAGCTTGTAGGAGGACCAACGTCACCCTCCCTCTCCCCATCC
TTTCCTCCCAGTCTCCCCGAATCCCTGCTGTACAAAGAGCGACAAGGCAT
CTGAAGATGAGGATGCTTCGCACCGTCTGTAATGTCCACCAAGGGGACCG
CGAAATGTGGGGAATCTTCGGATTTTTTCCCCAACTGGTTGAGTGTCACG
CTCGGGGCCAAGTGGAGGCGAATCGAGGAGCAAAGAAAGGAAAGGACGGA
AGGATGATGACGGAATGTACAGGTGTTCAAGCCAGATGTGAGACAGAGGG
AAAGAAGAGCTGTCGAATAATAACTTAGAGCTTGTCTGCAATTTCTGAAT
TTCTGAAAAGTCGGATGCAAAGGCATTTCCCAACGCGAGCAAATAATTTT
TTGCAAATGAATGCAATAAACGACCGATTTTTTGGGAAGACAAATCCGTC
AAGTTACTTAATGGGCGATAAAGATCTCTCCATCAGGCTGTGCCTGAGTC
GCCCCGCGCACGTCAGCTGTCGTCTCCATGGCGAGCCACCGTCTCCTTAA
CCCATTCGTCGTGACCACGTGCATTCGCCCACCCAAAACGCGCGTGAATG
CCCCTCATCTTGTCTAACACCCAATCCCGCCACACGAGGCCCTGCATCTT
CGATTCGGGATTTCAGAACCGCGGCGGGGCAGGCTGACCAGGAGAGAGGG
ATGCAAGCCTCCTCAAGCGAGGCATGGAGTCAGCTAATGGGACGTCAAAC
GATTGGTCGCCG
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Coding sequence (CDS) from alignment at CM002461.1:53672..55633-

>rna3304 ID=rna3304|Name=rna3304|organism=Nannochloropsis gaditana|type=CDS|length=1512bp|location=Sequence derived from alignment at CM002461.1:53672..55633- (Nannochloropsis gaditana)
TCTCCCCGAATCCCTGCTGTACAAAGAGCGACAAGGCATCTGAAGATGAG
GATGCTTCGCACCGTCTGTAATGTCCACCAAGGGGACCGCGAAATGTGGG
GAATCTTCGGATTTTTTCCCCAACTGGTTGAGTGTCACGCTCGGGGCCAA
GTGGAGGCGAATCGAGGAGCAAAGAAAGGAAAGGACGGAAGGATGATGAC
GGAATGTACAGGTGTTCAAGCCAGATGTGAGACAGAGGGAAAGAAGAGCT
GTCGAATAATAACTTAGACGCTGCCCGTAACCTGGCCGCCGAGCAGGTGC
CGGGGACCGAGGAGGACGGGCAGCCGAGCATTAACGAGGTCTTGGACTCT
GGCCGGCGGAAGATCAACGGCTGGCATGGCGTGTGGAATGGGTGGGGATG
GACCGCAGATGGGCTGCCATCTTTCAGGGGTTCTTTGCTTGGAGCGTCGC
GGAGACTTATGGAGGAGGAGGTGGTGGGAGAAAGGTCATCTTTTGACTTA
CCAGTCTCCCCGAATCCCTGCTGTACAAAGAGCGACAAGGCATCTGAAGA
TGAGGATGCTTCGCACCGTCTGTAATGTCCACCAAGGGGACCGCGAAATG
TGGGGAATCTTCGGATTTTTTCCCCAACTGGTTGAGTGTCACGCTCGGGG
CCAAGTGGAGGCGAATCGAGGAGCAAAGAAAGGAAAGGACGGAAGGATGA
TGACGGAATGTACAGGTGTTCAAGCCAGATGTGAGACAGAGGGAAAGAAG
AGCTGTCGAATAATAACTTAGACGCTGCCCGTAACCTGGCCGCCGAGCAG
GTGCCGGGGACCGAGGAGGACGGGCAGCCGAGCATTAACGAGGTCTTGGA
CTCTGGCCGGCGGAAGATCAACGGCTGGCATGGCGTGTGGAATGGGTGGG
GATGGACCGCAGATGGGCTGCCATCTTTCAGGGGTTCTTTGCTTGGAGCG
TCGCGGAGACTTATGGAGGAGGAGGTGGTGGGAGAAAGGTCATCTTTTGA
CTTACCAGTCTCCCCGAATCCCTGCTGTACAAAGAGCGACAAGGCATCTG
AAGATGAGGATGCTTCGCACCGTCTGTAATGTCCACCAAGGGGACCGCGA
AATGTGGGGAATCTTCGGATTTTTTCCCCAACTGGTTGAGTGTCACGCTC
GGGGCCAAGTGGAGGCGAATCGAGGAGCAAAGAAAGGAAAGGACGGAAGG
ATGATGACGGAATGTACAGGTGTTCAAGCCAGATGTGAGACAGAGGGAAA
GAAGAGCTGTCGAATAATAACTTAGACGCTGCCCGTAACCTGGCCGCCGA
GCAGGTGCCGGGGACCGAGGAGGACGGGCAGCCGAGCATTAACGAGGTCT
TGGACTCTGGCCGGCGGAAGATCAACGGCTGGCATGGCGTGTGGAATGGG
TGGGGATGGACCGCAGATGGGCTGCCATCTTTCAGGGGTTCTTTGCTTGG
AGCGTCGCGGAGACTTATGGAGGAGGAGGTGGTGGGAGAAAGGTCATCTT
TTGACTTACCAG
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Synonyms
Publications