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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100185g3.8945.mrna |
| Orig protein id | gnl|cribi|Naga_100185g3.8945 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002461.1 | supercontig | CM002461.1:27245..29099 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna3294 ID=rna3294|Name=rna3294|organism=Nannochloropsis gaditana|type=mRNA|length=1472bp
TCTCTTCCTTAAAGCCCCGGTGATCCTTCTTCATCCGGGTCTTTTTTAAA
AGTGAGTAATGGTGTGCAAATATGAGGCAAATCTGCCGGTATGGAGTTTT
TAGGTTTCTTGTATCTTGGGGCAAAAAAGACGGGTTGCAGTTGATCGCAC
GTCGACTTCCGTGAAGATACTAACGAGCATAGCAGCCTTTCTTCTCGGCG
CCACCATGACCTTCCCGGTTATCTCTCACCCGTTCCGTTTCAAATTCTGA
CACATCCAGCAAATAAAGGCATCATGAAGATCTTTTCTTTTGCGCTTGCG
GGCATCACATGTTCTGCGGCGGTTGCTCAGACGTTGCGTGGTCTAGCAGC
TTGGGCTGGTGAAGAGATAGGCGTCAACACAGCATCCAGAGATGCCTTCA
CGAGCCTGGAGGACCCTATGCGCGTGGCGGCCAATACCGTTCGAGCCGAG
CACGGACTCGAACCTCTCGCGTCCGACCTGAGCCTCTCACGCACCGCTCT
GGACTTGGCGAGGGAGCTGGGTACGCAGGATAATAAAGAAGCAATGTTGA
GTCCGGAGGTGGAGAGCAAGTTATTGGAACGTGCTCGGGCGAACGGATTC
ACGGGTACATCCGTGAAAGCAAATATCTTCACCATTGATGCCAAGGCGGA
GAACCTAACGGCCACAGACACAGAGGCTCATGCACTCGCCGCAGTGGCTT
CCTGGGCTGGTGGGAAGAACGCGACAGCAGGACTGGATGTAAACGAGCAC
GAGCACGCCGCTACTGCAGGGTTGAAAGTGGATGGACACGAAGATGTCAG
TGATCATAGTGATGAAGGAGGCGTGAAAGAGGTCAAGGGCGCCGCGGCTG
GATTGGAAGTGGGGGAGCACGCGGAGGACACCGAGGAGGACACTGAAGAG
GACGAGGAGGATGAGGAGGATGAAAAGGATGACAGTGACAGTGACAGTGA
CAGTGACAGTGACAGTGACAGTGATAGTGACGACGATGACGACGATGACG
ACGATGACGACGATGATGACGATGACGACGACGATGATGATGACGAGAAG
GACGCGACAGCTGCCCTTCTGGGAGACTTCAACGTTGTTGGCAGTGCAGG
CGTCATTGCTCCATCGGGCCAGGCCTACATTACGCAGCTGTACGGTGTTT
CTCCGTAGAAGCTGGGAAAGGCCGTTTCTTAGAACATGATCGAAGTATAT
GTGCGGTCACCGCTACTATCTGATGAATATTCTATCGTAAAAGCGCTACG
ATGCAGGCGTCAGCAATGAGTGGGCAAGGGCTTGCAGATTTGCTTGGACG
GCATAAGGCAGGTCACTTACTTTATTCTTGGAGGTGATAAATCATGCTAT
ATATAATGTATGTGAAGAAAGGCAGGGCACCGCGTGTCGTTGGACTGAAA
CGAATAAATGTTGGTTATTAAGCTCGTTAATTCTTTGCAGATAGCCTTCT
TGGCCTTTTTAATTCCAGCCCC back to topprotein sequence of rna3294 >rna3294-protein ID=rna3294-protein|Name=rna3294|organism=Nannochloropsis gaditana|type=polypeptide|length=295bp
MKIFSFALAGITCSAAVAQTLRGLAAWAGEEIGVNTASARDAFTSLEDPM
RVAANTVRAEHGLEPLASDLSLSRTALDLARELGTQDNKEAMLSPEVESK
LLERARANGFTGTSVKANIFTIDAKAENLTATDTEAHALAAVASWAGGKN
ATAGLDVNEHEHAATAGLKVDGHEDVSDHSDEGGVKEVKGAAAGLEVGEH
AEDTEEDTEEDEEDEEDEKDDSDSDSDSDSDSDSDSDDDDDDDDDDDDDD
DDDDDDDDEKDATAALLGDFNVVGSAGVIAPSGQAYITQLYGVSP back to topmRNA from alignment at CM002461.1:27245..29099- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna3294 ID=rna3294|Name=rna3294|organism=Nannochloropsis gaditana|type=mRNA|length=1855bp|location=Sequence derived from alignment at CM002461.1:27245..29099- (Nannochloropsis gaditana)
TCTCTTCCTTAAAGCCCCGGTGATCCTTCTTCATCCGGGTCTTTTTTAAA
AGTGAGTAATGGTGTGCAAATATGAGGCAAATCTGCCGGTATGGAGTTTT
TAGGTTTCTTGTATCTTGGGGCAAAAAAGACGGGTTGCAGTTGATCGCAC
GTCGACTTCCGTGAAGATACTAACGAGCATAGCAGCCTTTCTTCTCGGCG
CCACCATGACCTTCCCGGTTATCTCTCACCCGTTCCGTTTCAAATTCTGA
CACATCCAGCAAATAAAGGCATCATGAAGATCTTTTCTTTTGCGCTTGCG
GGCATCACATGTTCTGCGGCGGTTGCTCAGGTAAGTAGCTGGCAATTGAC
GGCAACAGGAAGATTCCAGAAAGAGCCGCGCATCCCCTTAAAAGATCCAC
GAATGGCATGTCTCAAATTCATTTATCCTGCTAACTTCAAACGAATCATA
AACAGACGTTGCGTGGTCTAGCAGCTTGGGCTGGTGAAGAGATAGGCGTC
AACACAGCATGTAAGAAGAGCATGAATCTGGGAAAACCCTGTATTCCTGC
GGCAAAGGCAATGTGTGCCAATTCCGATAACACCGCTTCCTACTCCAACC
AAGCTAAGTCGCTCACTGTATTTCTGTGCATTTTATCCTTGCTAGCAGCC
AGAGATGCCTTCACGAGCCTGGAGGACCCTATGCGCGTGGCGGCCAATAC
CGTTCGAGCCGAGCACGGACTCGAACCTCTCGCGTCCGACCTGAGCCTCT
CACGCACCGCTCTGGACTTGGCGAGGGAGCTGGGTACGCAGGATAATAAA
GAAGCAATGTTGAGTCCGGAGGTGGAGAGCAAGTTATTGGAACGTGCTCG
GGCGAACGGATTCACGGTAGGCGACCGGAGTGGAATGTGGCGTAGTACTG
GGGGAGGTATCTCGCTACAAATGGGGAGTCCTTCGGACACCGTTACAGAC
CATTTATTTTCCAATACCATCTCACGTGTGCTACAGGGTACATCCGTGAA
AGCAAATATCTTCACCATTGATGCCAAGGCGGAGAACCTAACGGCCACAG
ACACAGAGGCTCATGCACTCGCCGCAGTGGCTTCCTGGGCTGGTGGGAAG
AACGCGACAGCAGGACTGGATGTAAACGAGCACGAGCACGCCGCTACTGC
AGGGTTGAAAGTGGATGGACACGAAGATGTCAGTGATCATAGTGATGAAG
GAGGCGTGAAAGAGGTCAAGGGCGCCGCGGCTGGATTGGAAGTGGGGGAG
CACGCGGAGGACACCGAGGAGGACACTGAAGAGGACGAGGAGGATGAGGA
GGATGAAAAGGATGACAGTGACAGTGACAGTGACAGTGACAGTGACAGTG
ACAGTGATAGTGACGACGATGACGACGATGACGACGATGACGACGATGAT
GACGATGACGACGACGATGATGATGACGAGAAGGACGCGACAGCTGCCCT
TCTGGGAGACTTCAACGTTGTTGGCAGTGCAGGCGTCATTGCTCCATCGG
GCCAGGCCTACATTACGCAGCTGTACGGTGTTTCTCCGTAGAAGCTGGGA
AAGGCCGTTTCTTAGAACATGATCGAAGTATATGTGCGGTCACCGCTACT
ATCTGATGAATATTCTATCGTAAAAGCGCTACGATGCAGGCGTCAGCAAT
GAGTGGGCAAGGGCTTGCAGATTTGCTTGGACGGCATAAGGCAGGTCACT
TACTTTATTCTTGGAGGTGATAAATCATGCTATATATAATGTATGTGAAG
AAAGGCAGGGCACCGCGTGTCGTTGGACTGAAACGAATAAATGTTGGTTA
TTAAGCTCGTTAATTCTTTGCAGATAGCCTTCTTGGCCTTTTTAATTCCA
GCCCC back to topCoding sequence (CDS) from alignment at CM002461.1:27245..29099- >rna3294 ID=rna3294|Name=rna3294|organism=Nannochloropsis gaditana|type=CDS|length=3552bp|location=Sequence derived from alignment at CM002461.1:27245..29099- (Nannochloropsis gaditana)
GGTACATCCGTGAAAGCAAATATCTTCACCATTGATGCCAAGGCGGAGAA
CCTAACGGCCACAGACACAGAGGCTCATGCACTCGCCGCAGTGGCTTCCT
GGGCTGGTGGGAAGAACGCGACAGCAGGACTGGATGTAAACGAGCACGAG
CACGCCGCTACTGCAGGGTTGAAAGTGGATGGACACGAAGATGTCAGTGA
TCATAGTGATGAAGGAGGCGTGAAAGAGGTCAAGGGCGCCGCGGCTGGAT
TGGAAGTGGGGGAGCACGCGGAGGACACCGAGGAGGACACTGAAGAGGAC
GAGGAGGATGAGGAGGATGAAAAGGATGACAGTGACAGTGACAGTGACAG
TGACAGTGACAGTGACAGTGATAGTGACGACGATGACGACGATGACGACG
ATGACGACGATGATGACGATGACGACGACGATGATGATGACGAGAAGGAC
GCGACAGCTGCCCTTCTGGGAGACTTCAACGTTGTTGGCAGTGCAGGCGT
CATTGCTCCATCGGGCCAGGCCTACATTACGCAGCTGTACGGTGTTTCTC
CGTAGCAGCCAGAGATGCCTTCACGAGCCTGGAGGACCCTATGCGCGTGG
CGGCCAATACCGTTCGAGCCGAGCACGGACTCGAACCTCTCGCGTCCGAC
CTGAGCCTCTCACGCACCGCTCTGGACTTGGCGAGGGAGCTGGGTACGCA
GGATAATAAAGAAGCAATGTTGAGTCCGGAGGTGGAGAGCAAGTTATTGG
AACGTGCTCGGGCGAACGGATTCACGACGTTGCGTGGTCTAGCAGCTTGG
GCTGGTGAAGAGATAGGCGTCAACACAGCATATGAAGATCTTTTCTTTTG
CGCTTGCGGGCATCACATGTTCTGCGGCGGTTGCTCAGGGTACATCCGTG
AAAGCAAATATCTTCACCATTGATGCCAAGGCGGAGAACCTAACGGCCAC
AGACACAGAGGCTCATGCACTCGCCGCAGTGGCTTCCTGGGCTGGTGGGA
AGAACGCGACAGCAGGACTGGATGTAAACGAGCACGAGCACGCCGCTACT
GCAGGGTTGAAAGTGGATGGACACGAAGATGTCAGTGATCATAGTGATGA
AGGAGGCGTGAAAGAGGTCAAGGGCGCCGCGGCTGGATTGGAAGTGGGGG
AGCACGCGGAGGACACCGAGGAGGACACTGAAGAGGACGAGGAGGATGAG
GAGGATGAAAAGGATGACAGTGACAGTGACAGTGACAGTGACAGTGACAG
TGACAGTGATAGTGACGACGATGACGACGATGACGACGATGACGACGATG
ATGACGATGACGACGACGATGATGATGACGAGAAGGACGCGACAGCTGCC
CTTCTGGGAGACTTCAACGTTGTTGGCAGTGCAGGCGTCATTGCTCCATC
GGGCCAGGCCTACATTACGCAGCTGTACGGTGTTTCTCCGTAGCAGCCAG
AGATGCCTTCACGAGCCTGGAGGACCCTATGCGCGTGGCGGCCAATACCG
TTCGAGCCGAGCACGGACTCGAACCTCTCGCGTCCGACCTGAGCCTCTCA
CGCACCGCTCTGGACTTGGCGAGGGAGCTGGGTACGCAGGATAATAAAGA
AGCAATGTTGAGTCCGGAGGTGGAGAGCAAGTTATTGGAACGTGCTCGGG
CGAACGGATTCACGACGTTGCGTGGTCTAGCAGCTTGGGCTGGTGAAGAG
ATAGGCGTCAACACAGCATATGAAGATCTTTTCTTTTGCGCTTGCGGGCA
TCACATGTTCTGCGGCGGTTGCTCAGGGTACATCCGTGAAAGCAAATATC
TTCACCATTGATGCCAAGGCGGAGAACCTAACGGCCACAGACACAGAGGC
TCATGCACTCGCCGCAGTGGCTTCCTGGGCTGGTGGGAAGAACGCGACAG
CAGGACTGGATGTAAACGAGCACGAGCACGCCGCTACTGCAGGGTTGAAA
GTGGATGGACACGAAGATGTCAGTGATCATAGTGATGAAGGAGGCGTGAA
AGAGGTCAAGGGCGCCGCGGCTGGATTGGAAGTGGGGGAGCACGCGGAGG
ACACCGAGGAGGACACTGAAGAGGACGAGGAGGATGAGGAGGATGAAAAG
GATGACAGTGACAGTGACAGTGACAGTGACAGTGACAGTGACAGTGATAG
TGACGACGATGACGACGATGACGACGATGACGACGATGATGACGATGACG
ACGACGATGATGATGACGAGAAGGACGCGACAGCTGCCCTTCTGGGAGAC
TTCAACGTTGTTGGCAGTGCAGGCGTCATTGCTCCATCGGGCCAGGCCTA
CATTACGCAGCTGTACGGTGTTTCTCCGTAGCAGCCAGAGATGCCTTCAC
GAGCCTGGAGGACCCTATGCGCGTGGCGGCCAATACCGTTCGAGCCGAGC
ACGGACTCGAACCTCTCGCGTCCGACCTGAGCCTCTCACGCACCGCTCTG
GACTTGGCGAGGGAGCTGGGTACGCAGGATAATAAAGAAGCAATGTTGAG
TCCGGAGGTGGAGAGCAAGTTATTGGAACGTGCTCGGGCGAACGGATTCA
CGACGTTGCGTGGTCTAGCAGCTTGGGCTGGTGAAGAGATAGGCGTCAAC
ACAGCATATGAAGATCTTTTCTTTTGCGCTTGCGGGCATCACATGTTCTG
CGGCGGTTGCTCAGGGTACATCCGTGAAAGCAAATATCTTCACCATTGAT
GCCAAGGCGGAGAACCTAACGGCCACAGACACAGAGGCTCATGCACTCGC
CGCAGTGGCTTCCTGGGCTGGTGGGAAGAACGCGACAGCAGGACTGGATG
TAAACGAGCACGAGCACGCCGCTACTGCAGGGTTGAAAGTGGATGGACAC
GAAGATGTCAGTGATCATAGTGATGAAGGAGGCGTGAAAGAGGTCAAGGG
CGCCGCGGCTGGATTGGAAGTGGGGGAGCACGCGGAGGACACCGAGGAGG
ACACTGAAGAGGACGAGGAGGATGAGGAGGATGAAAAGGATGACAGTGAC
AGTGACAGTGACAGTGACAGTGACAGTGACAGTGATAGTGACGACGATGA
CGACGATGACGACGATGACGACGATGATGACGATGACGACGACGATGATG
ATGACGAGAAGGACGCGACAGCTGCCCTTCTGGGAGACTTCAACGTTGTT
GGCAGTGCAGGCGTCATTGCTCCATCGGGCCAGGCCTACATTACGCAGCT
GTACGGTGTTTCTCCGTAGCAGCCAGAGATGCCTTCACGAGCCTGGAGGA
CCCTATGCGCGTGGCGGCCAATACCGTTCGAGCCGAGCACGGACTCGAAC
CTCTCGCGTCCGACCTGAGCCTCTCACGCACCGCTCTGGACTTGGCGAGG
GAGCTGGGTACGCAGGATAATAAAGAAGCAATGTTGAGTCCGGAGGTGGA
GAGCAAGTTATTGGAACGTGCTCGGGCGAACGGATTCACGACGTTGCGTG
GTCTAGCAGCTTGGGCTGGTGAAGAGATAGGCGTCAACACAGCATATGAA
GATCTTTTCTTTTGCGCTTGCGGGCATCACATGTTCTGCGGCGGTTGCTC
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