EWM27391.1, cds3285 (CDS) Nannochloropsis gaditana

Overview
NameEWM27391.1
Unique Namecds3285
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:28770..28826 -
Alignment locationCM002461.1:28590..28644 -
Alignment locationCM002461.1:28234..28454 -
Alignment locationCM002461.1:27559..28113 -

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Properties
Property NameValue
Protein idEWM27391.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100185g3.8945.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:28770..28826 -
CM002461.1supercontigCM002461.1:28590..28644 -
CM002461.1supercontigCM002461.1:28234..28454 -
CM002461.1supercontigCM002461.1:27559..28113 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM27391.1 vs. NCBI_GenBank
Match: gi|585109619|gb|EWM27391.1| (hypothetical protein Naga_100185g3 [Nannochloropsis gaditana])

HSP 1 Score: 572.007 bits (1473), Expect = 0.000e+0
Identity = 295/295 (100.00%), Postives = 295/295 (100.00%), Query Frame = 0 
Query:    1 MKIFSFALAGITCSAAVAQTLRGLAAWAGEEIGVNTASARDAFTSLEDPMRVAANTVRAEHGLEPLASDLSLSRTALDLARELGTQDNKEAMLSPEVESKLLERARANGFTGTSVKANIFTIDAKAENLTATDTEAHALAAVASWAGGKNATAGLDVNEHEHAATAGLKVDGHEDVSDHSDEGGVKEVKGAAAGLEVGEHAEDTEEDTEEDEEDEEDEKDDSDSDSDSDSDSDSDSDDDDDDDDDDDDDDDDDDDDDDEKDATAALLGDFNVVGSAGVIAPSGQAYITQLYGVSP 295
            MKIFSFALAGITCSAAVAQTLRGLAAWAGEEIGVNTASARDAFTSLEDPMRVAANTVRAEHGLEPLASDLSLSRTALDLARELGTQDNKEAMLSPEVESKLLERARANGFTGTSVKANIFTIDAKAENLTATDTEAHALAAVASWAGGKNATAGLDVNEHEHAATAGLKVDGHEDVSDHSDEGGVKEVKGAAAGLEVGEHAEDTEEDTEEDEEDEEDEKDDSDSDSDSDSDSDSDSDDDDDDDDDDDDDDDDDDDDDDEKDATAALLGDFNVVGSAGVIAPSGQAYITQLYGVSP
Sbjct:    1 MKIFSFALAGITCSAAVAQTLRGLAAWAGEEIGVNTASARDAFTSLEDPMRVAANTVRAEHGLEPLASDLSLSRTALDLARELGTQDNKEAMLSPEVESKLLERARANGFTGTSVKANIFTIDAKAENLTATDTEAHALAAVASWAGGKNATAGLDVNEHEHAATAGLKVDGHEDVSDHSDEGGVKEVKGAAAGLEVGEHAEDTEEDTEEDEEDEEDEKDDSDSDSDSDSDSDSDSDDDDDDDDDDDDDDDDDDDDDDEKDATAALLGDFNVVGSAGVIAPSGQAYITQLYGVSP 295
[Close]
BLAST of EWM27391.1 vs. NCBI_GenBank
Match: gi|585109618|gb|EWM27390.1| (hypothetical protein Naga_100185g3 [Nannochloropsis gaditana])

HSP 1 Score: 566.229 bits (1458), Expect = 0.000e+0
Identity = 294/295 (99.66%), Postives = 294/295 (99.66%), Query Frame = 0 
Query:    1 MKIFSFALAGITCSAAVAQTLRGLAAWAGEEIGVNTASARDAFTSLEDPMRVAANTVRAEHGLEPLASDLSLSRTALDLARELGTQDNKEAMLSPEVESKLLERARANGFTGTSVKANIFTIDAKAENLTATDTEAHALAAVASWAGGKNATAGLDVNEHEHAATAGLKVDGHEDVSDHSDEGGVKEVKGAAAGLEVGEHAEDTEEDTEEDEEDEEDEKDDSDSDSDSDSDSDSDSDDDDDDDDDDDDDDDDDDDDDDEKDATAALLGDFNVVGSAGVIAPSGQAYITQLYGVSP 295
            MKIFSFALAGITCSAAVAQTLRGLAAWAGEEIGVNTAS RDAFTSLEDPMRVAANTVRAEHGLEPLASDLSLSRTALDLARELGTQDNKEAMLSPEVESKLLERARANGFTGTSVKANIFTIDAKAENLTATDTEAHALAAVASWAGGKNATAGLDVNEHEHAATAGLKVDGHEDVSDHSDEGGVKEVKGAAAGLEVGEHAEDTEEDTEEDEEDEEDEKDDSDSDSDSDSDSDSDSDDDDDDDDDDDDDDDDDDDDDDEKDATAALLGDFNVVGSAGVIAPSGQAYITQLYGVSP
Sbjct:    1 MKIFSFALAGITCSAAVAQTLRGLAAWAGEEIGVNTAS-RDAFTSLEDPMRVAANTVRAEHGLEPLASDLSLSRTALDLARELGTQDNKEAMLSPEVESKLLERARANGFTGTSVKANIFTIDAKAENLTATDTEAHALAAVASWAGGKNATAGLDVNEHEHAATAGLKVDGHEDVSDHSDEGGVKEVKGAAAGLEVGEHAEDTEEDTEEDEEDEEDEKDDSDSDSDSDSDSDSDSDDDDDDDDDDDDDDDDDDDDDDEKDATAALLGDFNVVGSAGVIAPSGQAYITQLYGVSP 294
The following BLAST results are available for this feature:
BLAST of EWM27391.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585109619|gb|EWM27391.1|0.000e+0100.00hypothetical protein Naga_100185g3 [Nannochloropsi... [more]
gi|585109618|gb|EWM27390.1|0.000e+099.66hypothetical protein Naga_100185g3 [Nannochloropsi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3294rna3294Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications