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Properties
| Property Name | Value |
|---|
| Product | HopJ type III effector protein |
| Orig transcript id | gnl|cribi|Naga_100212g7.2172.mrna |
| Orig protein id | gnl|cribi|Naga_100212g7.2172 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002460.1 | supercontig | CM002460.1:1215920..1217568 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna3279 ID=rna3279|Name=rna3279|organism=Nannochloropsis gaditana|type=mRNA|length=846bp
ATGGACGCTCCCAGTCTGTCTACCTCCTCCCTCTCGCCCTCACTTTCTGT
TGATAAACTTTTCGACGTACGAGACAAAAACGTTTTAATTACTGGAGGTG
GGACGGGCATCGGCCGAATGATAGCTCAAGGCTTTGTGGATAACGGCGCA
CGTGTTTTTATAGCCTCCCGGAAAGAAGCCACGCAAGCAGCAGCAGAGAT
TGTCCGCGCGTCCTCCCGTCCGCCCTCCCGGGTCTTCTGTCGTGGCCTGA
CTGCCGACCTCTCCAAGGGGGAAAGCGAGCAGATGAATCTCCTCTCGGCA
GTCGCCCGCGAGACAGCCGGCAAGCTGCATGTCCTCGTGAACAACGCGGG
CACCAACTGGGCCGAGCCCGTCGAGTCCTACCCTATAAAGGCTTTCGAGA
AGGTCGTCGCCCTCAACCTCCTCGCTGCCTTCAGTCTCACGCGCCTCGCC
TTACCCCTACTTGAAGCAACGGCCACCCTTGGAAATCCTGCGCGCGTGAT
AAACATAGGCTCGATTGACGGGGCGCGCGTTACGCTGATCGACCACTTTG
CTTACTCTTCTTCCAAGGCCGCATTGCATCAGCTTTCCAAGGTCTTAGCT
GGCAAGCTAGGTCACCGACACATCACCGTAAATACCCTCGCTCCGGGTCC
CTTTGCCAGCAAGATGATGAAGGTGACCCTGGCGCGGGCGCAGGAGGAGA
TAGAGGCGGGGACGGCCTTGGGCAGAATAGGATCTCCAGAGGATATGGCA
GGAGCAGCCTTGTTCCTGGCCTCGCGGGCAGGAGCCTACGTGACGGGCGC
CGTACTGGTCGTGGACGGGGGGATCCTGGTCAAGCCCCGACTTTAA back to topprotein sequence of rna3279 >rna3279-protein ID=rna3279-protein|Name=rna3279|organism=Nannochloropsis gaditana|type=polypeptide|length=246bp
MYILFGVPLLLLMASPASQALRISTMTPFFSRQVSERAAGLSKIHSAPKS
SSAVCATDTSSITSTPTTWDEQGAAGFIPPPIAVVGLLTRVGPGGFGGTG
PPLKFDEVMQAIDDTYDYTPKPFKNGDVTNPAGTNAGSCKLFSLGILHGL
TPASLLALFGEHYRSVIQTPKGSDHGNIRSLLSKGWQAVSFPEDFPEKFA
FNWTRHFKENERTVLIKFNLLPPMGGAGPSSDPGGILGPAREHIRV back to topmRNA from alignment at CM002460.1:1215920..1217568+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna3279 ID=rna3279|Name=rna3279|organism=Nannochloropsis gaditana|type=mRNA|length=1649bp|location=Sequence derived from alignment at CM002460.1:1215920..1217568+ (Nannochloropsis gaditana)
ATGTACATCCTCTTTGgcgttccccttctccttctcatgGCGTCACCAGC
CAGCCAGGCGTTGAGGATATCGACGATGACCCCCTTTTTCAGCCGTCAAG
TCTCGGAAAGAGGTAAAGAAGGGCATGGATTGCGCCCACCCAAAAATGCG
CTTtattggggggggggggaggtcaagCGTGTTGCCGTATCCGCGTAGCC
GTAGCATTCTGAGCCATTCCTGTATTACCCCCATCTTGCAGCCGCCGGCT
TGAGCAAGATTCACTCGGCACCTAAGTCTAGCTCTGCTGTGTGTGCGACA
GACACAAGGTGAGTACATCTGTTAGGGTGTCTTTATTTCCTCGCGTGGCG
CCACATCCCCTTTTCGAACGTGCCCCTCACGCACagctctctccccctct
cttcccgacTCCTCGACATCAGCTCCATTACGTCCACCCCAACAACCTGG
GATGAGCAAGGAGCGGCTGGgttcattcctcctcccatagCGGTAGTGGG
GCTGTTGACGCGAGTAGGACCTGGAGGATTCGGAGGGACGGGCCCGCCTT
TGAAATTCGACGAGGTCATGCaggtaggagaggaagcgaggtcGATCGCT
ATCAAAGCTACGCACATTTGATAGGCATAGGGTAATATCAAGACTGTTGG
CAGTTTGTTGTGTCTACGCGTCAAAAAGCGCTCAGTGGAAACTCTTGATT
TTCGGATTTCTCTGCCACACAACCGAAACCGAACCCCAGCTTCCGTGATG
CTTTCCAAGAATTTTTGCAAGCCTTTGAGCACCTTTAGCGATGGTTGAAG
CGGTTGAGGCAAAGGGAGTAGGAGGTCCGAGATTCATTCTTACCCCTTGC
AAATTTGTACAGGCTATCGACGACACATACGACTACACGCCTAAGCCCTT
CAAAAATGGGGACGTAACGAACCCTGCAGGAACTAATGCGGTACGTCCCA
CACTTCTAGACTTCACAATAAAGCTACAGGTAGATGTCAAGCCCCCTTAT
CTTCCCTTCTAAGAACTTATTTTCAATCAATGGCTAGGGCTCCTGCAAGC
TATTCTCCCTCGGCATCCTTCACGGCTTAACCCCCGCCTCGTTGCTCGCC
CTTTTCGGTACGTCGTCGTCACATTTGAGTACATGCGGCCTTATCAAGTC
ATCCACTGACCTATTCTTATTGCTATGAGTCATTTTTAAATAAAATATCA
TCCTAGCTTCCCGAGGATGTACaacctttctcttcttttttaagCGATaa
cctttctttttttgttttgaTTGAGTCTTACGGCTAAATTTCTTACCACC
GCTCTTGCAATTAATCTTATCATTTTGTGGGCATAGGTGAACACTACCGG
TCTGTAATTCAGACCCCAAAAGGTAGCGATCACGGGAATATTCGAAGTCT
CCTCTCAAAGGGATGGCAGGCGGTCTCTTTTCCTGAAGGTCTATCCCTGC
GGCTCAAATAATAGTGTCGATGGAGAGAAACATGTTAGATTTCCCTGAAA
AGTTCGCATTCAATTGGACAAGACACTTcaaagaaaatgaaaggacAGTT
TTGATCAAATTCAATTTGTTGCCTCCcatgggaggagcaggcccaAGCAG
CGACCCTGGCGGTATTCTTGGGCCAGCGAGGGAGCATATTCGCGTGTGA back to topCoding sequence (CDS) from alignment at CM002460.1:1215920..1217568+ >rna3279 ID=rna3279|Name=rna3279|organism=Nannochloropsis gaditana|type=CDS|length=5187bp|location=Sequence derived from alignment at CM002460.1:1215920..1217568+ (Nannochloropsis gaditana)
ATGTACATCCTCTTTGgcgttccccttctccttctcatgGCGTCACCAGC
CAGCCAGGCGTTGAGGATATCGACGATGACCCCCTTTTTCAGCCGTCAAG
TCTCGGAAAGAGCCGCCGGCTTGAGCAAGATTCACTCGGCACCTAAGTCT
AGCTCTGCTGTGTGTGCGACAGACACAAGCTCCATTACGTCCACCCCAAC
AACCTGGGATGAGCAAGGAGCGGCTGGgttcattcctcctcccatagCGG
TAGTGGGGCTGTTGACGCGAGTAGGACCTGGAGGATTCGGAGGGACGGGC
CCGCCTTTGAAATTCGACGAGGTCATGCagGCTATCGACGACACATACGA
CTACACGCCTAAGCCCTTCAAAAATGGGGACGTAACGAACCCTGCAGGAA
CTAATGCGGGCTCCTGCAAGCTATTCTCCCTCGGCATCCTTCACGGCTTA
ACCCCCGCCTCGTTGCTCGCCCTTTTCGGTGAACACTACCGGTCTGTAAT
TCAGACCCCAAAAGGTAGCGATCACGGGAATATTCGAAGTCTCCTCTCAA
AGGGATGGCAGGCGGTCTCTTTTCCTGAAGATTTCCCTGAAAAGTTCGCA
TTCAATTGGACAAGACACTTcaaagaaaatgaaaggacAGTTTTGATCAA
ATTCAATTTGTTGCCTCCcatgggaggagcaggcccaAGCAGCGACCCTG
GCGGTATTCTTGGGCCAGCGAGGGAGCATATTCGCGTGTGAATGTACATC
CTCTTTGgcgttccccttctccttctcatgGCGTCACCAGCCAGCCAGGC
GTTGAGGATATCGACGATGACCCCCTTTTTCAGCCGTCAAGTCTCGGAAA
GAGCCGCCGGCTTGAGCAAGATTCACTCGGCACCTAAGTCTAGCTCTGCT
GTGTGTGCGACAGACACAAGCTCCATTACGTCCACCCCAACAACCTGGGA
TGAGCAAGGAGCGGCTGGgttcattcctcctcccatagCGGTAGTGGGGC
TGTTGACGCGAGTAGGACCTGGAGGATTCGGAGGGACGGGCCCGCCTTTG
AAATTCGACGAGGTCATGCagGCTATCGACGACACATACGACTACACGCC
TAAGCCCTTCAAAAATGGGGACGTAACGAACCCTGCAGGAACTAATGCGG
GCTCCTGCAAGCTATTCTCCCTCGGCATCCTTCACGGCTTAACCCCCGCC
TCGTTGCTCGCCCTTTTCGGTGAACACTACCGGTCTGTAATTCAGACCCC
AAAAGGTAGCGATCACGGGAATATTCGAAGTCTCCTCTCAAAGGGATGGC
AGGCGGTCTCTTTTCCTGAAGATTTCCCTGAAAAGTTCGCATTCAATTGG
ACAAGACACTTcaaagaaaatgaaaggacAGTTTTGATCAAATTCAATTT
GTTGCCTCCcatgggaggagcaggcccaAGCAGCGACCCTGGCGGTATTC
TTGGGCCAGCGAGGGAGCATATTCGCGTGTGAATGTACATCCTCTTTGgc
gttccccttctccttctcatgGCGTCACCAGCCAGCCAGGCGTTGAGGAT
ATCGACGATGACCCCCTTTTTCAGCCGTCAAGTCTCGGAAAGAGCCGCCG
GCTTGAGCAAGATTCACTCGGCACCTAAGTCTAGCTCTGCTGTGTGTGCG
ACAGACACAAGCTCCATTACGTCCACCCCAACAACCTGGGATGAGCAAGG
AGCGGCTGGgttcattcctcctcccatagCGGTAGTGGGGCTGTTGACGC
GAGTAGGACCTGGAGGATTCGGAGGGACGGGCCCGCCTTTGAAATTCGAC
GAGGTCATGCagGCTATCGACGACACATACGACTACACGCCTAAGCCCTT
CAAAAATGGGGACGTAACGAACCCTGCAGGAACTAATGCGGGCTCCTGCA
AGCTATTCTCCCTCGGCATCCTTCACGGCTTAACCCCCGCCTCGTTGCTC
GCCCTTTTCGGTGAACACTACCGGTCTGTAATTCAGACCCCAAAAGGTAG
CGATCACGGGAATATTCGAAGTCTCCTCTCAAAGGGATGGCAGGCGGTCT
CTTTTCCTGAAGATTTCCCTGAAAAGTTCGCATTCAATTGGACAAGACAC
TTcaaagaaaatgaaaggacAGTTTTGATCAAATTCAATTTGTTGCCTCC
catgggaggagcaggcccaAGCAGCGACCCTGGCGGTATTCTTGGGCCAG
CGAGGGAGCATATTCGCGTGTGAATGTACATCCTCTTTGgcgttcccctt
ctccttctcatgGCGTCACCAGCCAGCCAGGCGTTGAGGATATCGACGAT
GACCCCCTTTTTCAGCCGTCAAGTCTCGGAAAGAGCCGCCGGCTTGAGCA
AGATTCACTCGGCACCTAAGTCTAGCTCTGCTGTGTGTGCGACAGACACA
AGCTCCATTACGTCCACCCCAACAACCTGGGATGAGCAAGGAGCGGCTGG
gttcattcctcctcccatagCGGTAGTGGGGCTGTTGACGCGAGTAGGAC
CTGGAGGATTCGGAGGGACGGGCCCGCCTTTGAAATTCGACGAGGTCATG
CagGCTATCGACGACACATACGACTACACGCCTAAGCCCTTCAAAAATGG
GGACGTAACGAACCCTGCAGGAACTAATGCGGGCTCCTGCAAGCTATTCT
CCCTCGGCATCCTTCACGGCTTAACCCCCGCCTCGTTGCTCGCCCTTTTC
GGTGAACACTACCGGTCTGTAATTCAGACCCCAAAAGGTAGCGATCACGG
GAATATTCGAAGTCTCCTCTCAAAGGGATGGCAGGCGGTCTCTTTTCCTG
AAGATTTCCCTGAAAAGTTCGCATTCAATTGGACAAGACACTTcaaagaa
aatgaaaggacAGTTTTGATCAAATTCAATTTGTTGCCTCCcatgggagg
agcaggcccaAGCAGCGACCCTGGCGGTATTCTTGGGCCAGCGAGGGAGC
ATATTCGCGTGTGAATGTACATCCTCTTTGgcgttccccttctccttctc
atgGCGTCACCAGCCAGCCAGGCGTTGAGGATATCGACGATGACCCCCTT
TTTCAGCCGTCAAGTCTCGGAAAGAGCCGCCGGCTTGAGCAAGATTCACT
CGGCACCTAAGTCTAGCTCTGCTGTGTGTGCGACAGACACAAGCTCCATT
ACGTCCACCCCAACAACCTGGGATGAGCAAGGAGCGGCTGGgttcattcc
tcctcccatagCGGTAGTGGGGCTGTTGACGCGAGTAGGACCTGGAGGAT
TCGGAGGGACGGGCCCGCCTTTGAAATTCGACGAGGTCATGCagGCTATC
GACGACACATACGACTACACGCCTAAGCCCTTCAAAAATGGGGACGTAAC
GAACCCTGCAGGAACTAATGCGGGCTCCTGCAAGCTATTCTCCCTCGGCA
TCCTTCACGGCTTAACCCCCGCCTCGTTGCTCGCCCTTTTCGGTGAACAC
TACCGGTCTGTAATTCAGACCCCAAAAGGTAGCGATCACGGGAATATTCG
AAGTCTCCTCTCAAAGGGATGGCAGGCGGTCTCTTTTCCTGAAGATTTCC
CTGAAAAGTTCGCATTCAATTGGACAAGACACTTcaaagaaaatgaaagg
acAGTTTTGATCAAATTCAATTTGTTGCCTCCcatgggaggagcaggccc
aAGCAGCGACCCTGGCGGTATTCTTGGGCCAGCGAGGGAGCATATTCGCG
TGTGAATGTACATCCTCTTTGgcgttccccttctccttctcatgGCGTCA
CCAGCCAGCCAGGCGTTGAGGATATCGACGATGACCCCCTTTTTCAGCCG
TCAAGTCTCGGAAAGAGCCGCCGGCTTGAGCAAGATTCACTCGGCACCTA
AGTCTAGCTCTGCTGTGTGTGCGACAGACACAAGCTCCATTACGTCCACC
CCAACAACCTGGGATGAGCAAGGAGCGGCTGGgttcattcctcctcccat
agCGGTAGTGGGGCTGTTGACGCGAGTAGGACCTGGAGGATTCGGAGGGA
CGGGCCCGCCTTTGAAATTCGACGAGGTCATGCagGCTATCGACGACACA
TACGACTACACGCCTAAGCCCTTCAAAAATGGGGACGTAACGAACCCTGC
AGGAACTAATGCGGGCTCCTGCAAGCTATTCTCCCTCGGCATCCTTCACG
GCTTAACCCCCGCCTCGTTGCTCGCCCTTTTCGGTGAACACTACCGGTCT
GTAATTCAGACCCCAAAAGGTAGCGATCACGGGAATATTCGAAGTCTCCT
CTCAAAGGGATGGCAGGCGGTCTCTTTTCCTGAAGATTTCCCTGAAAAGT
TCGCATTCAATTGGACAAGACACTTcaaagaaaatgaaaggacAGTTTTG
ATCAAATTCAATTTGTTGCCTCCcatgggaggagcaggcccaAGCAGCGA
CCCTGGCGGTATTCTTGGGCCAGCGAGGGAGCATATTCGCGTGTGAATGT
ACATCCTCTTTGgcgttccccttctccttctcatgGCGTCACCAGCCAGC
CAGGCGTTGAGGATATCGACGATGACCCCCTTTTTCAGCCGTCAAGTCTC
GGAAAGAGCCGCCGGCTTGAGCAAGATTCACTCGGCACCTAAGTCTAGCT
CTGCTGTGTGTGCGACAGACACAAGCTCCATTACGTCCACCCCAACAACC
TGGGATGAGCAAGGAGCGGCTGGgttcattcctcctcccatagCGGTAGT
GGGGCTGTTGACGCGAGTAGGACCTGGAGGATTCGGAGGGACGGGCCCGC
CTTTGAAATTCGACGAGGTCATGCagGCTATCGACGACACATACGACTAC
ACGCCTAAGCCCTTCAAAAATGGGGACGTAACGAACCCTGCAGGAACTAA
TGCGGGCTCCTGCAAGCTATTCTCCCTCGGCATCCTTCACGGCTTAACCC
CCGCCTCGTTGCTCGCCCTTTTCGGTGAACACTACCGGTCTGTAATTCAG
ACCCCAAAAGGTAGCGATCACGGGAATATTCGAAGTCTCCTCTCAAAGGG
ATGGCAGGCGGTCTCTTTTCCTGAAGATTTCCCTGAAAAGTTCGCATTCA
ATTGGACAAGACACTTcaaagaaaatgaaaggacAGTTTTGATCAAATTC
AATTTGTTGCCTCCcatgggaggagcaggcccaAGCAGCGACCCTGGCGG
TATTCTTGGGCCAGCGAGGGAGCATATTCGCGTGTGA back to top
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