EWM27405.1, cds3270 (CDS) Nannochloropsis gaditana

Overview
NameEWM27405.1
Unique Namecds3270
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:1215920..1216031 +
Alignment locationCM002460.1:1216161..1216227 +
Alignment locationCM002460.1:1216342..1216492 +
Alignment locationCM002460.1:1216782..1216859 +
Alignment locationCM002460.1:1216957..1217026 +
Alignment locationCM002460.1:1217256..1217357 +
Alignment locationCM002460.1:1217408..1217568 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27405.1
ProductHopJ type III effector protein
Orig transcript idgnl|cribi|Naga_100212g7.2172.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:1215920..1216031 +
CM002460.1supercontigCM002460.1:1216161..1216227 +
CM002460.1supercontigCM002460.1:1216342..1216492 +
CM002460.1supercontigCM002460.1:1216782..1216859 +
CM002460.1supercontigCM002460.1:1216957..1217026 +
CM002460.1supercontigCM002460.1:1217256..1217357 +
CM002460.1supercontigCM002460.1:1217408..1217568 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR014984HopJ
Homology
BLAST of EWM27405.1 vs. NCBI_GenBank
Match: gi|585109636|gb|EWM27405.1| (HopJ type III effector protein [Nannochloropsis gaditana])

HSP 1 Score: 501.901 bits (1291), Expect = 1.184e-179
Identity = 246/246 (100.00%), Postives = 246/246 (100.00%), Query Frame = 0
Query:    1 MYILFGVPLLLLMASPASQALRISTMTPFFSRQVSERAAGLSKIHSAPKSSSAVCATDTSSITSTPTTWDEQGAAGFIPPPIAVVGLLTRVGPGGFGGTGPPLKFDEVMQAIDDTYDYTPKPFKNGDVTNPAGTNAGSCKLFSLGILHGLTPASLLALFGEHYRSVIQTPKGSDHGNIRSLLSKGWQAVSFPEDFPEKFAFNWTRHFKENERTVLIKFNLLPPMGGAGPSSDPGGILGPAREHIRV 246
            MYILFGVPLLLLMASPASQALRISTMTPFFSRQVSERAAGLSKIHSAPKSSSAVCATDTSSITSTPTTWDEQGAAGFIPPPIAVVGLLTRVGPGGFGGTGPPLKFDEVMQAIDDTYDYTPKPFKNGDVTNPAGTNAGSCKLFSLGILHGLTPASLLALFGEHYRSVIQTPKGSDHGNIRSLLSKGWQAVSFPEDFPEKFAFNWTRHFKENERTVLIKFNLLPPMGGAGPSSDPGGILGPAREHIRV
Sbjct:    1 MYILFGVPLLLLMASPASQALRISTMTPFFSRQVSERAAGLSKIHSAPKSSSAVCATDTSSITSTPTTWDEQGAAGFIPPPIAVVGLLTRVGPGGFGGTGPPLKFDEVMQAIDDTYDYTPKPFKNGDVTNPAGTNAGSCKLFSLGILHGLTPASLLALFGEHYRSVIQTPKGSDHGNIRSLLSKGWQAVSFPEDFPEKFAFNWTRHFKENERTVLIKFNLLPPMGGAGPSSDPGGILGPAREHIRV 246          
BLAST of EWM27405.1 vs. NCBI_GenBank
Match: gi|553187878|ref|XP_005854697.1| (type iii effector protein [Nannochloropsis gaditana CCMP526] >gi|422294362|gb|EKU21662.1| type iii effector protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 273.863 bits (699), Expect = 2.359e-90
Identity = 154/172 (89.53%), Postives = 155/172 (90.12%), Query Frame = 0
Query:    1 MYILFGVPLLLLMASPASQALRISTMTPFFSRQVSERAAGLSKIHSAPKSSSAVCATDTSS------------ITSTPTTWDEQGAAGFIPPPIAVVGLLTRVGPGGFGGTGPPLKFDEVMQAIDDTYDYTPKPFKNGDVTNPAGTNAGSCKLFSLGILHGLTPASLLALFG 160
            MYILFGVPLLLLMASPASQALRISTMTPFFSRQVSERAAGLSKIH APKSS+AVCATDTSS            ITS PTTWDEQGAAGFIPPPIAVVGLL RVGPGGFGGTGPPLKFDEVMQAIDDTYDYTPKPFKNGDVTNPAGTNAGSCKL SLGILHGL PASLLALFG
Sbjct:    1 MYILFGVPLLLLMASPASQALRISTMTPFFSRQVSERAAGLSKIHLAPKSSTAVCATDTSSLPISSRLLDISSITSAPTTWDEQGAAGFIPPPIAVVGLLARVGPGGFGGTGPPLKFDEVMQAIDDTYDYTPKPFKNGDVTNPAGTNAGSCKLLSLGILHGLPPASLLALFG 172          
BLAST of EWM27405.1 vs. NCBI_GenBank
Match: gi|553186638|ref|XP_005854459.1| (type iii effector protein, partial [Nannochloropsis gaditana CCMP526] >gi|422294605|gb|EKU21905.1| type iii effector protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 168.318 bits (425), Expect = 4.647e-50
Identity = 96/100 (96.00%), Postives = 96/100 (96.00%), Query Frame = 0
Query:   60 SSITSTPTTWDEQGAAGFIPPPIAVVGLLTRVGPGGFGGTGPPLKFDEVMQAIDDTYDYTPKPFKNGDVTNPAGTNAGSCKLFSLGILHGLTPASLLALF 159
            SSITS PTTWDEQGAAGFIPPPIAVVGLL RVGPGGFGGTGPPLKFDEVMQAIDDTYDYTPKPFKNGDVTNPAGTNAGSCKL SLGILHGL PASLLALF
Sbjct:    1 SSITSAPTTWDEQGAAGFIPPPIAVVGLLARVGPGGFGGTGPPLKFDEVMQAIDDTYDYTPKPFKNGDVTNPAGTNAGSCKLLSLGILHGLPPASLLALF 100          
BLAST of EWM27405.1 vs. NCBI_GenBank
Match: gi|981542751|ref|WP_059746572.1| (type III effector [Shewanella frigidimarina] >gi|979437731|gb|KVX01195.1| type III effector [Shewanella frigidimarina])

HSP 1 Score: 112.079 bits (279), Expect = 6.235e-28
Identity = 46/91 (50.55%), Postives = 61/91 (67.03%), Query Frame = 0
Query:  103 LKFDEVMQAIDDTYDYTPKPFKNGDVTNPAGTNAGSCKLFSLGILHGLTPASLLALFGEHYRSVIQTPKGSDHGNIRSLLSKGWQAVSFPE 193
            ++F++ M  ID  YD+TP  FKNGD  N AG N+GSCK+F+ G +  LTP   L LFG+HYR V+ TP+G+DH NIR  +  GW  V F +
Sbjct:   20 IRFEDTMAVIDGHYDFTPSGFKNGDQLNEAGQNSGSCKVFAFGQIQQLTPQQTLTLFGQHYRDVVATPEGNDHQNIRQFMQHGWDGVLFSQ 110          
BLAST of EWM27405.1 vs. NCBI_GenBank
Match: gi|1152414450|ref|WP_078277479.1| (HopJ type III effector protein [Moraxella caviae] >gi|1151579624|gb|OOR87257.1| HopJ type III effector protein [Moraxella caviae])

HSP 1 Score: 111.309 bits (277), Expect = 1.543e-27
Identity = 50/97 (51.55%), Postives = 59/97 (60.82%), Query Frame = 0
Query:   97 GGTGPPLKFDEVMQAIDDTYDYTPKPFKNGDVTNPAGTNAGSCKLFSLGILHGLTPASLLALFGEHYRSVIQTPKGSDHGNIRSLLSKGWQAVSFPE 193
            G T   LKF +++  ID  YDYTP  F NGD  N AGTN GS K+FS   LHGL     L LF EHY+SV+ TP GSDH NIR+ +  GW     P+
Sbjct:   12 GVTSGALKFSDIIAFIDSNYDYTPVQFYNGDAVNAAGTNEGSAKVFSFAKLHGLNQLDTLTLFAEHYQSVLATPDGSDHANIRNFMHYGWHGFGMPK 108          
BLAST of EWM27405.1 vs. NCBI_GenBank
Match: gi|522137857|ref|WP_020649066.1| (hypothetical protein [Solimonas variicoloris])

HSP 1 Score: 110.923 bits (276), Expect = 2.062e-27
Identity = 49/94 (52.13%), Postives = 61/94 (64.89%), Query Frame = 0
Query:  101 PPLKFDEVMQAIDDTYDYTPKPFKNGDVTNPAGTNAGSCKLFSLGILHGLTPASLLALFGEHYR-SVIQTPKGSDHGNIRSLLSKGWQAVSFPE 193
              ++F E +  ID  YDYTP  F+NGD+ N AG NAGSCKLFS   L GLT A  LA FG +YR  V++ P G+DH NIR+ +  GW  VSF +
Sbjct:   15 EQIEFSETIAVIDGAYDYTPTAFRNGDLRNEAGQNAGSCKLFSFAQLQGLTEAETLACFGRYYRDDVLKNPDGTDHQNIRNFMRTGWAGVSFAQ 108          
BLAST of EWM27405.1 vs. NCBI_GenBank
Match: gi|1180831791|ref|WP_084304825.1| (HopJ type III effector protein [Pseudomonas flavescens] >gi|1087088483|emb|SDH76379.1| HopJ type III effector protein [Pseudomonas flavescens])

HSP 1 Score: 110.538 bits (275), Expect = 2.491e-27
Identity = 49/95 (51.58%), Postives = 60/95 (63.16%), Query Frame = 0
Query:   99 TGPPLKFDEVMQAIDDTYDYTPKPFKNGDVTNPAGTNAGSCKLFSLGILHGLTPASLLALFGEHYRSVIQTPKGSDHGNIRSLLSKGWQAVSFPE 193
            +G    F E +  I + YDY P   +NGDV+N AG N GSCK   L +L GL+    L  FGEHYRSV+ TPKGSDH NIR+L+S G   VSF +
Sbjct:   12 SGEHFAFAETLAFIAEHYDYRPSALRNGDVSNAAGQNEGSCKTLGLALLEGLSEKEALLCFGEHYRSVLATPKGSDHANIRALMSSGLAGVSFEQ 106          
BLAST of EWM27405.1 vs. NCBI_GenBank
Match: gi|499955597|ref|WP_011636331.1| (type III effector [Shewanella frigidimarina] >gi|114333326|gb|ABI70708.1| conserved hypothetical cytosolic protein [Shewanella frigidimarina NCIMB 400])

HSP 1 Score: 110.538 bits (275), Expect = 2.575e-27
Identity = 44/94 (46.81%), Postives = 60/94 (63.83%), Query Frame = 0
Query:  100 GPPLKFDEVMQAIDDTYDYTPKPFKNGDVTNPAGTNAGSCKLFSLGILHGLTPASLLALFGEHYRSVIQTPKGSDHGNIRSLLSKGWQAVSFPE 193
               ++F++ M  ID  YD+T   FKNGD  N AG N+GSCK+F+ G  H LT    LA+FG+HYR V+ TP+G+DH NIR  +  GW  + F +
Sbjct:   17 ADTIRFEDTMAVIDGHYDFTSSAFKNGDQLNEAGQNSGSCKVFAFGQTHQLTVQQTLAMFGQHYRDVVATPQGTDHQNIRQFMQHGWDGILFSQ 110          
BLAST of EWM27405.1 vs. NCBI_GenBank
Match: gi|818886620|ref|WP_046696440.1| (HopJ type III effector protein [Moraxella bovoculi] >gi|817910091|gb|AKG07967.1| HopJ type III effector protein [Moraxella bovoculi] >gi|817912002|gb|AKG09497.1| HopJ type III effector protein [Moraxella bovoculi] >gi|817914229|gb|AKG11312.1| HopJ type III effector protein [Moraxella bovoculi] >gi|817916673|gb|AKG13320.1| HopJ type III effector protein [Moraxella bovoculi])

HSP 1 Score: 109.768 bits (273), Expect = 4.401e-27
Identity = 48/93 (51.61%), Postives = 60/93 (64.52%), Query Frame = 0
Query:  102 PLKFDEVMQAIDDTYDYTPKPFKNGDVTNPAGTNAGSCKLFSLGILHGLTPASLLALFGEHYRSVIQTPKGSDHGNIRSLLSKGWQAVSFPED 194
             LKF +V+  ID  YDYTP  F NG+V N AGTN GS K+FSL  LHGL     L LF EHY+SV+  P G+DH NIR+ +  GWQ +   ++
Sbjct:   16 ALKFADVIAFIDGNYDYTPVEFSNGEVVNAAGTNEGSAKVFSLAKLHGLNQVDTLKLFAEHYQSVLGNPDGTDHANIRNFMHYGWQGIVLQKN 108          
BLAST of EWM27405.1 vs. NCBI_GenBank
Match: gi|1180482834|ref|WP_083988517.1| (type III effector [Chryseobacterium arthrosphaerae])

HSP 1 Score: 109.383 bits (272), Expect = 5.812e-27
Identity = 48/93 (51.61%), Postives = 62/93 (66.67%), Query Frame = 0
Query:  103 LKFDEVMQAIDDTYDYTPKPFKNGDVTNPAGTNAGSCKLFSLGILHGLTPASLLALFGEHYR-SVIQTPKGSDHGNIRSLLSKGWQAVSFPED 194
            ++F++V+  ID  Y++TP  FKNGD TN AG N GSCK+FS   L  LTP   L LFGE YR  V++ P G+DH NIR+ +  GW+ V F ED
Sbjct:   13 IQFNDVIAYIDQNYEFTPTAFKNGDTTNQAGQNNGSCKVFSFARLQNLTPEETLLLFGEFYRDDVLKNPDGNDHQNIRNFMQSGWEGVIFEED 105          
The following BLAST results are available for this feature:
BLAST of EWM27405.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109636|gb|EWM27405.1|1.184e-179100.00HopJ type III effector protein [Nannochloropsis ga... [more]
gi|553187878|ref|XP_005854697.1|2.359e-9089.53type iii effector protein [Nannochloropsis gaditan... [more]
gi|553186638|ref|XP_005854459.1|4.647e-5096.00type iii effector protein, partial [Nannochloropsi... [more]
gi|981542751|ref|WP_059746572.1|6.235e-2850.55type III effector [Shewanella frigidimarina] >gi|9... [more]
gi|1152414450|ref|WP_078277479.1|1.543e-2751.55HopJ type III effector protein [Moraxella caviae] ... [more]
gi|522137857|ref|WP_020649066.1|2.062e-2752.13hypothetical protein [Solimonas variicoloris][more]
gi|1180831791|ref|WP_084304825.1|2.491e-2751.58HopJ type III effector protein [Pseudomonas flaves... [more]
gi|499955597|ref|WP_011636331.1|2.575e-2746.81type III effector [Shewanella frigidimarina] >gi|1... [more]
gi|818886620|ref|WP_046696440.1|4.401e-2751.61HopJ type III effector protein [Moraxella bovoculi... [more]
gi|1180482834|ref|WP_083988517.1|5.812e-2751.61type III effector [Chryseobacterium arthrosphaerae... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3279rna3279Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications