EWM27405.1, cds3270 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27405.1 vs. NCBI_GenBank
Match: gi|585109636|gb|EWM27405.1| (HopJ type III effector protein [Nannochloropsis gaditana]) HSP 1 Score: 501.901 bits (1291), Expect = 1.184e-179 Identity = 246/246 (100.00%), Postives = 246/246 (100.00%), Query Frame = 0 Query: 1 MYILFGVPLLLLMASPASQALRISTMTPFFSRQVSERAAGLSKIHSAPKSSSAVCATDTSSITSTPTTWDEQGAAGFIPPPIAVVGLLTRVGPGGFGGTGPPLKFDEVMQAIDDTYDYTPKPFKNGDVTNPAGTNAGSCKLFSLGILHGLTPASLLALFGEHYRSVIQTPKGSDHGNIRSLLSKGWQAVSFPEDFPEKFAFNWTRHFKENERTVLIKFNLLPPMGGAGPSSDPGGILGPAREHIRV 246 MYILFGVPLLLLMASPASQALRISTMTPFFSRQVSERAAGLSKIHSAPKSSSAVCATDTSSITSTPTTWDEQGAAGFIPPPIAVVGLLTRVGPGGFGGTGPPLKFDEVMQAIDDTYDYTPKPFKNGDVTNPAGTNAGSCKLFSLGILHGLTPASLLALFGEHYRSVIQTPKGSDHGNIRSLLSKGWQAVSFPEDFPEKFAFNWTRHFKENERTVLIKFNLLPPMGGAGPSSDPGGILGPAREHIRV Sbjct: 1 MYILFGVPLLLLMASPASQALRISTMTPFFSRQVSERAAGLSKIHSAPKSSSAVCATDTSSITSTPTTWDEQGAAGFIPPPIAVVGLLTRVGPGGFGGTGPPLKFDEVMQAIDDTYDYTPKPFKNGDVTNPAGTNAGSCKLFSLGILHGLTPASLLALFGEHYRSVIQTPKGSDHGNIRSLLSKGWQAVSFPEDFPEKFAFNWTRHFKENERTVLIKFNLLPPMGGAGPSSDPGGILGPAREHIRV 246
BLAST of EWM27405.1 vs. NCBI_GenBank
Match: gi|553187878|ref|XP_005854697.1| (type iii effector protein [Nannochloropsis gaditana CCMP526] >gi|422294362|gb|EKU21662.1| type iii effector protein [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 273.863 bits (699), Expect = 2.359e-90 Identity = 154/172 (89.53%), Postives = 155/172 (90.12%), Query Frame = 0 Query: 1 MYILFGVPLLLLMASPASQALRISTMTPFFSRQVSERAAGLSKIHSAPKSSSAVCATDTSS------------ITSTPTTWDEQGAAGFIPPPIAVVGLLTRVGPGGFGGTGPPLKFDEVMQAIDDTYDYTPKPFKNGDVTNPAGTNAGSCKLFSLGILHGLTPASLLALFG 160 MYILFGVPLLLLMASPASQALRISTMTPFFSRQVSERAAGLSKIH APKSS+AVCATDTSS ITS PTTWDEQGAAGFIPPPIAVVGLL RVGPGGFGGTGPPLKFDEVMQAIDDTYDYTPKPFKNGDVTNPAGTNAGSCKL SLGILHGL PASLLALFG Sbjct: 1 MYILFGVPLLLLMASPASQALRISTMTPFFSRQVSERAAGLSKIHLAPKSSTAVCATDTSSLPISSRLLDISSITSAPTTWDEQGAAGFIPPPIAVVGLLARVGPGGFGGTGPPLKFDEVMQAIDDTYDYTPKPFKNGDVTNPAGTNAGSCKLLSLGILHGLPPASLLALFG 172
BLAST of EWM27405.1 vs. NCBI_GenBank
Match: gi|553186638|ref|XP_005854459.1| (type iii effector protein, partial [Nannochloropsis gaditana CCMP526] >gi|422294605|gb|EKU21905.1| type iii effector protein, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 168.318 bits (425), Expect = 4.647e-50 Identity = 96/100 (96.00%), Postives = 96/100 (96.00%), Query Frame = 0 Query: 60 SSITSTPTTWDEQGAAGFIPPPIAVVGLLTRVGPGGFGGTGPPLKFDEVMQAIDDTYDYTPKPFKNGDVTNPAGTNAGSCKLFSLGILHGLTPASLLALF 159 SSITS PTTWDEQGAAGFIPPPIAVVGLL RVGPGGFGGTGPPLKFDEVMQAIDDTYDYTPKPFKNGDVTNPAGTNAGSCKL SLGILHGL PASLLALF Sbjct: 1 SSITSAPTTWDEQGAAGFIPPPIAVVGLLARVGPGGFGGTGPPLKFDEVMQAIDDTYDYTPKPFKNGDVTNPAGTNAGSCKLLSLGILHGLPPASLLALF 100
BLAST of EWM27405.1 vs. NCBI_GenBank
Match: gi|981542751|ref|WP_059746572.1| (type III effector [Shewanella frigidimarina] >gi|979437731|gb|KVX01195.1| type III effector [Shewanella frigidimarina]) HSP 1 Score: 112.079 bits (279), Expect = 6.235e-28 Identity = 46/91 (50.55%), Postives = 61/91 (67.03%), Query Frame = 0 Query: 103 LKFDEVMQAIDDTYDYTPKPFKNGDVTNPAGTNAGSCKLFSLGILHGLTPASLLALFGEHYRSVIQTPKGSDHGNIRSLLSKGWQAVSFPE 193 ++F++ M ID YD+TP FKNGD N AG N+GSCK+F+ G + LTP L LFG+HYR V+ TP+G+DH NIR + GW V F + Sbjct: 20 IRFEDTMAVIDGHYDFTPSGFKNGDQLNEAGQNSGSCKVFAFGQIQQLTPQQTLTLFGQHYRDVVATPEGNDHQNIRQFMQHGWDGVLFSQ 110
BLAST of EWM27405.1 vs. NCBI_GenBank
Match: gi|1152414450|ref|WP_078277479.1| (HopJ type III effector protein [Moraxella caviae] >gi|1151579624|gb|OOR87257.1| HopJ type III effector protein [Moraxella caviae]) HSP 1 Score: 111.309 bits (277), Expect = 1.543e-27 Identity = 50/97 (51.55%), Postives = 59/97 (60.82%), Query Frame = 0 Query: 97 GGTGPPLKFDEVMQAIDDTYDYTPKPFKNGDVTNPAGTNAGSCKLFSLGILHGLTPASLLALFGEHYRSVIQTPKGSDHGNIRSLLSKGWQAVSFPE 193 G T LKF +++ ID YDYTP F NGD N AGTN GS K+FS LHGL L LF EHY+SV+ TP GSDH NIR+ + GW P+ Sbjct: 12 GVTSGALKFSDIIAFIDSNYDYTPVQFYNGDAVNAAGTNEGSAKVFSFAKLHGLNQLDTLTLFAEHYQSVLATPDGSDHANIRNFMHYGWHGFGMPK 108
BLAST of EWM27405.1 vs. NCBI_GenBank
Match: gi|522137857|ref|WP_020649066.1| (hypothetical protein [Solimonas variicoloris]) HSP 1 Score: 110.923 bits (276), Expect = 2.062e-27 Identity = 49/94 (52.13%), Postives = 61/94 (64.89%), Query Frame = 0 Query: 101 PPLKFDEVMQAIDDTYDYTPKPFKNGDVTNPAGTNAGSCKLFSLGILHGLTPASLLALFGEHYR-SVIQTPKGSDHGNIRSLLSKGWQAVSFPE 193 ++F E + ID YDYTP F+NGD+ N AG NAGSCKLFS L GLT A LA FG +YR V++ P G+DH NIR+ + GW VSF + Sbjct: 15 EQIEFSETIAVIDGAYDYTPTAFRNGDLRNEAGQNAGSCKLFSFAQLQGLTEAETLACFGRYYRDDVLKNPDGTDHQNIRNFMRTGWAGVSFAQ 108
BLAST of EWM27405.1 vs. NCBI_GenBank
Match: gi|1180831791|ref|WP_084304825.1| (HopJ type III effector protein [Pseudomonas flavescens] >gi|1087088483|emb|SDH76379.1| HopJ type III effector protein [Pseudomonas flavescens]) HSP 1 Score: 110.538 bits (275), Expect = 2.491e-27 Identity = 49/95 (51.58%), Postives = 60/95 (63.16%), Query Frame = 0 Query: 99 TGPPLKFDEVMQAIDDTYDYTPKPFKNGDVTNPAGTNAGSCKLFSLGILHGLTPASLLALFGEHYRSVIQTPKGSDHGNIRSLLSKGWQAVSFPE 193 +G F E + I + YDY P +NGDV+N AG N GSCK L +L GL+ L FGEHYRSV+ TPKGSDH NIR+L+S G VSF + Sbjct: 12 SGEHFAFAETLAFIAEHYDYRPSALRNGDVSNAAGQNEGSCKTLGLALLEGLSEKEALLCFGEHYRSVLATPKGSDHANIRALMSSGLAGVSFEQ 106
BLAST of EWM27405.1 vs. NCBI_GenBank
Match: gi|499955597|ref|WP_011636331.1| (type III effector [Shewanella frigidimarina] >gi|114333326|gb|ABI70708.1| conserved hypothetical cytosolic protein [Shewanella frigidimarina NCIMB 400]) HSP 1 Score: 110.538 bits (275), Expect = 2.575e-27 Identity = 44/94 (46.81%), Postives = 60/94 (63.83%), Query Frame = 0 Query: 100 GPPLKFDEVMQAIDDTYDYTPKPFKNGDVTNPAGTNAGSCKLFSLGILHGLTPASLLALFGEHYRSVIQTPKGSDHGNIRSLLSKGWQAVSFPE 193 ++F++ M ID YD+T FKNGD N AG N+GSCK+F+ G H LT LA+FG+HYR V+ TP+G+DH NIR + GW + F + Sbjct: 17 ADTIRFEDTMAVIDGHYDFTSSAFKNGDQLNEAGQNSGSCKVFAFGQTHQLTVQQTLAMFGQHYRDVVATPQGTDHQNIRQFMQHGWDGILFSQ 110
BLAST of EWM27405.1 vs. NCBI_GenBank
Match: gi|818886620|ref|WP_046696440.1| (HopJ type III effector protein [Moraxella bovoculi] >gi|817910091|gb|AKG07967.1| HopJ type III effector protein [Moraxella bovoculi] >gi|817912002|gb|AKG09497.1| HopJ type III effector protein [Moraxella bovoculi] >gi|817914229|gb|AKG11312.1| HopJ type III effector protein [Moraxella bovoculi] >gi|817916673|gb|AKG13320.1| HopJ type III effector protein [Moraxella bovoculi]) HSP 1 Score: 109.768 bits (273), Expect = 4.401e-27 Identity = 48/93 (51.61%), Postives = 60/93 (64.52%), Query Frame = 0 Query: 102 PLKFDEVMQAIDDTYDYTPKPFKNGDVTNPAGTNAGSCKLFSLGILHGLTPASLLALFGEHYRSVIQTPKGSDHGNIRSLLSKGWQAVSFPED 194 LKF +V+ ID YDYTP F NG+V N AGTN GS K+FSL LHGL L LF EHY+SV+ P G+DH NIR+ + GWQ + ++ Sbjct: 16 ALKFADVIAFIDGNYDYTPVEFSNGEVVNAAGTNEGSAKVFSLAKLHGLNQVDTLKLFAEHYQSVLGNPDGTDHANIRNFMHYGWQGIVLQKN 108
BLAST of EWM27405.1 vs. NCBI_GenBank
Match: gi|1180482834|ref|WP_083988517.1| (type III effector [Chryseobacterium arthrosphaerae]) HSP 1 Score: 109.383 bits (272), Expect = 5.812e-27 Identity = 48/93 (51.61%), Postives = 62/93 (66.67%), Query Frame = 0 Query: 103 LKFDEVMQAIDDTYDYTPKPFKNGDVTNPAGTNAGSCKLFSLGILHGLTPASLLALFGEHYR-SVIQTPKGSDHGNIRSLLSKGWQAVSFPED 194 ++F++V+ ID Y++TP FKNGD TN AG N GSCK+FS L LTP L LFGE YR V++ P G+DH NIR+ + GW+ V F ED Sbjct: 13 IQFNDVIAYIDQNYEFTPTAFKNGDTTNQAGQNNGSCKVFSFARLQNLTPEETLLLFGEFYRDDVLKNPDGNDHQNIRNFMQSGWEGVIFEED 105 The following BLAST results are available for this feature:
BLAST of EWM27405.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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