rna3274, rna3274 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3274
Unique Name	rna3274
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1510
Alignment location	CM002460.1:1199452..1201312 +

Link to JBrowse

Properties


Property Name	Value
Product	Electron transport accessory protein-like domain protein
Orig transcript id	gnl\|cribi\|Naga_100237g2.1705.mrna
Orig protein id	gnl\|cribi\|Naga_100237g2.1705
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:1199452..1201312 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100237g2	gene3152	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3274	rna3274-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27413.1	cds3265	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002460.1:1199452..1201312+
coding sequence from alignment at CM002460.1:1199452..1201312+

mRNA sequence

>rna3274 ID=rna3274|Name=rna3274|organism=Nannochloropsis gaditana|type=mRNA|length=1510bp
GCATCAGGTGCTCGCAATGGAGATGCTAATTGAAGCCACCGTGGGTCTTG
CAGGTGCCGCTTCTTCCGTGGCCCTGTATAGGGGTATCAAACGTAGGCTG
TGTCCGTCTCAGGAAGAAAGAGATTTCTACGCGATGGACGGCAGTATGGC
GGGGCGTACGGTCCTGGTAACAGGCGCGAACAGCGGGGTGGGACGGGCAG
CAGCGGAGATCTTGGCACGCAAGGGGGCCCACGTCATGTGCGCCTGTCGA
GACATGCCTAAAGCGGAGGCCACCGCCTCTGCCATCAACCGACGCCTTCC
CCGCACCGTGCCCCCCTCCTCTTCCCCCTGGGGCCGTGCATCTCCGGCTC
CTGCGCCGCTGGACCTGGCCTCTCTGGCCAGCGTACGGGCGTTCGTGGAC
GCTTTTGAGAGAGAGCGAGGGGAAGAAGGGGAGGAGGAGCAAAAGAGGAA
CGAGGACAGGAGGTTGCGGCGAAGAGAGCCGCGATTGCACGTGCTCGTGA
ACAATGCGGGGGCGCTCTTTCCGAAGCGAGAGCTCGTGGATGTTTGGAAA
AGGGAGGAGCAGGAAGGGAGGGGGGAGGGAGAGGGCAAGCGAGAGAGCCT
GTTGGTGGAGAGGACGATGGCCACGAACCACCTGGGGCCCTTCCTCCTCA
CTGCCCTCCTCCTTCCCACCCTCAAAGAGACGGGCCGGGCGGAGGGACGC
CCTTCGAGGGTGGTCATGGTCTCCTCCAGGCTGGAGAAGGGGAAGGGCGA
GTATCTGGACTGCTGGGTCCGGGATCCCACCCTCACTCCCGCGGAGGACC
AGGACCCGAAGGAGGAAGGGGAAGAGGAAGGGGGCCCCGTGGCCAGTCCT
CCGTACCGACCCTTTTTGGCCTACGGGGCGAGCAAGCTGGCCAATCTGCT
GGCGGTGACTTACTTGCACCGGCAGCAGCAAGGATGGTCGCTGCCCGACG
CCACGCACCAACCGCCAACGACCACCACCCCCCCGTCGCTTCTCCTCGGA
CCGTCCACGCACCGATGGGACCCGTCCGACCAGCACGTCTCTGTCTATGG
ATGCACGCCCGGCATGGTGCACACGGCCCTCAATCGATCCCTGCTGCCTG
GCTTTGTTCGCGTCCTTTTCTGGCCTCTTAGCTACTCTCTGCTGCAGACG
CCCTTCGAGGGCGCGCGGCCTGTGGTCTTTTTAGCCGCGTCCGACAGGGT
CGAGGGCAGGGGGGGAGGATTCTGGGCGCTGGAAGCGCGGAAGAAGGAGG
AAGAAAGACGGGAGAAGGGGTGGGACGTGGTGGAGGTAGCTTCGAGCCCG
GAGGCAGAAGACATCGTGCTGGCCCATAAGTTGTGGGTTCGGCCACATGG
AATCGAGTGCGAGAGCTTCGATGAAGGAGTAGAAAGGACATTCAAATATC
AGCATGTACAGTCCATCGTATTGTCTTTTCAAAGAAAGATCTTTCTATTT
AGCCATCGCACTAGTCATATACTGAAATCTAAAAAAAATCCATTGGTACC
CGTATATTGA

protein sequence of rna3274

>rna3274-protein ID=rna3274-protein|Name=rna3274|organism=Nannochloropsis gaditana|type=polypeptide|length=216bp
MQMPFVNTLDALFHASHSRRLGEGNVQGNTSSTSSSDPPSTLMLSALGRR
EVTIVLAVILASVVACLLTPCAQGFVLTTGAARGLKRTEGLRVGGLREEE
GRRRIRAGVSSAPPLVRLQLQLDLGLGAEEEGGDFYNPDGIKEGDLVEII
ADSTFYSIPKAPKEGVNPKGLQGTVTMLKFTARNGVTCSANRPVVVKFTD
PYKFMGHFEFREVKRV

mRNA from alignment at CM002460.1:1199452..1201312+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3274 ID=rna3274|Name=rna3274|organism=Nannochloropsis gaditana|type=mRNA|length=1861bp|location=Sequence derived from alignment at CM002460.1:1199452..1201312+ (Nannochloropsis gaditana)
GTCTTACTCCAGGCGTGTTGAAATAGAAAGAAAGTAACGCAATAGTTGCG
GAGGGGAACGGGCAAGGGGACACGGGCTATTGGCTGGATCTTCGCCtcct
gaggaggaagggcggatgACAAGGAGATGATCCTCTCCAGCCTCTCTGAC
CAAAAGGTCGCCAGCTGTAGGAGAGGCTTTTCCAATCATGCAAATGCCAT
TTGTCAACACTCTCGACGCTCTCTTCCATGCCTCCCATTCCCGTCGATTA
GGTGAGGGGAACGTCCAAGGTAACACGTCTTCGACCTCTTCGTCAGACCC
GCCCTCTACACTCATGCTATCCGCTCTAGGCAGGAGAGAGGTCACGATAG
TATTGGCCGTTATTTTGGCCTCTGTCGTCGCTTGTTTGTTGACGCCCTGT
GCGCAGGGTTTCGTGTTGACGACGGGGGCAGCGAGGGGAttgaagaggac
ggaggggttgAGAGTAGGCGGCTtgcgcgaagaggagggacgaagaaGAA
TAAGAGCAGGTGAGCTATACATGGATGTACGGGGGATCCCAAAAAGTCGA
ATGCTTACAAAGATATGTTTTTGGAAAGCTTGTATTTTGGTGACCCAAAC
AAAATCGCTCAGCATCCCTTTGACTCAAGCTAACCTTCCCCTGGCCGAAT
TCCTTCACATCCTCATCCCTCAGGGGTTTCATCGGCTCCTCCATTGGTGA
GGTTGCAGCTGCAGTTGGATCTGGGCCTTGgggccgaggaagaaggaggg
gatttTTATAATCCGGATGGGAtcaaggaaggtgagggggagggaggaag
cttagaacggagagaggggcgagtGAGAGTCGCAGAAGACAAATTGTCCG
CGAGTGGTGTAATTGCtcagggagaaagggattgGGCTTACCTTCACtca
ccctcgtcctccccggcttGCGCAGGCGACCTGGTGGAGATCATCGCAGA
CAGCACCTTCTACTCCATCCCAAAGGCTCCCAAGGAGGGCGTCAACCCCA
AAGgtaacctccttcccccctgccctcgttctcctcctctttctccgtcG
TACTCTGCGTCGAGGTCCtgtgtccttcctccttcgcagGAGCCCTCTCT
GCTCGCCTctcagccctcctcccccgcccgcttCAGGCTTGCAAGGGACC
GTGACCATGTTGAAGTTCACGGCCAGGAATGGCGTCACTTGTTCGGCGAA
CAGGCCCGTAGTTGTGAAGGTgggcaaagaggggaaggaggcaaggctcT
AAGGGGTCGAGAAGCTCccagggtggtggtggggggtggggctagaggga
tggaaggggagtggaggggtgtaggggggaaggagggcgaggagggccag
gggcGTGTGCTTGAATACTTACCTTCGCCCCCCTATCCCTtactccgccc
tccctctcctcccaccgagcGCAGTTTACTGACCCTTACAAGTTCATGGG
CCACTTTGAGTTTCGGGAGGTGAAGAGAGtgtgagcgagggagagggggg
ggaggcagtgcGGTCgtgtggaggtggtgatgcaggggaagggaggggaa
ggacgatgagagaggaagcatgAGATAGGTCCTGAATTGACTTCAAAAGT
AGAAGGCCGTACCAAGCGCCCAAATGTGTTATTAATTGCAGCAAAGTCGC
GCATGCGAAGGCACCTTTGTGTCGTAATTGAGGTGTCTGAGCGCGCTTCC
CTTTGTTTCTGAGTGGATGCAGTGCCCTTGAAAGTATCTGACACCTGCTG
CCCCACGCGTCGGCTTGATATGGATATCAAGGCGGTCTCCGATGTGAGAA
GAAGTTTGTCAACCGTGGAAAGAAAGACGGCACTCTGCGATACAGATGCC
TCGAGGATGGA

Coding sequence (CDS) from alignment at CM002460.1:1199452..1201312+

>rna3274 ID=rna3274|Name=rna3274|organism=Nannochloropsis gaditana|type=CDS|length=3255bp|location=Sequence derived from alignment at CM002460.1:1199452..1201312+ (Nannochloropsis gaditana)
ATGCAAATGCCATTTGTCAACACTCTCGACGCTCTCTTCCATGCCTCCCA
TTCCCGTCGATTAGGTGAGGGGAACGTCCAAGGTAACACGTCTTCGACCT
CTTCGTCAGACCCGCCCTCTACACTCATGCTATCCGCTCTAGGCAGGAGA
GAGGTCACGATAGTATTGGCCGTTATTTTGGCCTCTGTCGTCGCTTGTTT
GTTGACGCCCTGTGCGCAGGGTTTCGTGTTGACGACGGGGGCAGCGAGGG
GAttgaagaggacggaggggttgAGAGTAGGCGGCTtgcgcgaagaggag
ggacgaagaaGAATAAGAGCAGGGGTTTCATCGGCTCCTCCATTGGTGAG
GTTGCAGCTGCAGTTGGATCTGGGCCTTGgggccgaggaagaaggagggg
atttTTATAATCCGGATGGGAtcaaggaagGCGACCTGGTGGAGATCATC
GCAGACAGCACCTTCTACTCCATCCCAAAGGCTCCCAAGGAGGGCGTCAA
CCCCAAAGGCTTGCAAGGGACCGTGACCATGTTGAAGTTCACGGCCAGGA
ATGGCGTCACTTGTTCGGCGAACAGGCCCGTAGTTGTGAAGTTTACTGAC
CCTTACAAGTTCATGGGCCACTTTGAGTTTCGGGAGGTGAAGAGAGtgtg
aATGCAAATGCCATTTGTCAACACTCTCGACGCTCTCTTCCATGCCTCCC
ATTCCCGTCGATTAGGTGAGGGGAACGTCCAAGGTAACACGTCTTCGACC
TCTTCGTCAGACCCGCCCTCTACACTCATGCTATCCGCTCTAGGCAGGAG
AGAGGTCACGATAGTATTGGCCGTTATTTTGGCCTCTGTCGTCGCTTGTT
TGTTGACGCCCTGTGCGCAGGGTTTCGTGTTGACGACGGGGGCAGCGAGG
GGAttgaagaggacggaggggttgAGAGTAGGCGGCTtgcgcgaagagga
gggacgaagaaGAATAAGAGCAGGGGTTTCATCGGCTCCTCCATTGGTGA
GGTTGCAGCTGCAGTTGGATCTGGGCCTTGgggccgaggaagaaggaggg
gatttTTATAATCCGGATGGGAtcaaggaagGCGACCTGGTGGAGATCAT
CGCAGACAGCACCTTCTACTCCATCCCAAAGGCTCCCAAGGAGGGCGTCA
ACCCCAAAGGCTTGCAAGGGACCGTGACCATGTTGAAGTTCACGGCCAGG
AATGGCGTCACTTGTTCGGCGAACAGGCCCGTAGTTGTGAAGTTTACTGA
CCCTTACAAGTTCATGGGCCACTTTGAGTTTCGGGAGGTGAAGAGAGtgt
gaATGCAAATGCCATTTGTCAACACTCTCGACGCTCTCTTCCATGCCTCC
CATTCCCGTCGATTAGGTGAGGGGAACGTCCAAGGTAACACGTCTTCGAC
CTCTTCGTCAGACCCGCCCTCTACACTCATGCTATCCGCTCTAGGCAGGA
GAGAGGTCACGATAGTATTGGCCGTTATTTTGGCCTCTGTCGTCGCTTGT
TTGTTGACGCCCTGTGCGCAGGGTTTCGTGTTGACGACGGGGGCAGCGAG
GGGAttgaagaggacggaggggttgAGAGTAGGCGGCTtgcgcgaagagg
agggacgaagaaGAATAAGAGCAGGGGTTTCATCGGCTCCTCCATTGGTG
AGGTTGCAGCTGCAGTTGGATCTGGGCCTTGgggccgaggaagaaggagg
ggatttTTATAATCCGGATGGGAtcaaggaagGCGACCTGGTGGAGATCA
TCGCAGACAGCACCTTCTACTCCATCCCAAAGGCTCCCAAGGAGGGCGTC
AACCCCAAAGGCTTGCAAGGGACCGTGACCATGTTGAAGTTCACGGCCAG
GAATGGCGTCACTTGTTCGGCGAACAGGCCCGTAGTTGTGAAGTTTACTG
ACCCTTACAAGTTCATGGGCCACTTTGAGTTTCGGGAGGTGAAGAGAGtg
tgaATGCAAATGCCATTTGTCAACACTCTCGACGCTCTCTTCCATGCCTC
CCATTCCCGTCGATTAGGTGAGGGGAACGTCCAAGGTAACACGTCTTCGA
CCTCTTCGTCAGACCCGCCCTCTACACTCATGCTATCCGCTCTAGGCAGG
AGAGAGGTCACGATAGTATTGGCCGTTATTTTGGCCTCTGTCGTCGCTTG
TTTGTTGACGCCCTGTGCGCAGGGTTTCGTGTTGACGACGGGGGCAGCGA
GGGGAttgaagaggacggaggggttgAGAGTAGGCGGCTtgcgcgaagag
gagggacgaagaaGAATAAGAGCAGGGGTTTCATCGGCTCCTCCATTGGT
GAGGTTGCAGCTGCAGTTGGATCTGGGCCTTGgggccgaggaagaaggag
gggatttTTATAATCCGGATGGGAtcaaggaagGCGACCTGGTGGAGATC
ATCGCAGACAGCACCTTCTACTCCATCCCAAAGGCTCCCAAGGAGGGCGT
CAACCCCAAAGGCTTGCAAGGGACCGTGACCATGTTGAAGTTCACGGCCA
GGAATGGCGTCACTTGTTCGGCGAACAGGCCCGTAGTTGTGAAGTTTACT
GACCCTTACAAGTTCATGGGCCACTTTGAGTTTCGGGAGGTGAAGAGAGt
gtgaATGCAAATGCCATTTGTCAACACTCTCGACGCTCTCTTCCATGCCT
CCCATTCCCGTCGATTAGGTGAGGGGAACGTCCAAGGTAACACGTCTTCG
ACCTCTTCGTCAGACCCGCCCTCTACACTCATGCTATCCGCTCTAGGCAG
GAGAGAGGTCACGATAGTATTGGCCGTTATTTTGGCCTCTGTCGTCGCTT
GTTTGTTGACGCCCTGTGCGCAGGGTTTCGTGTTGACGACGGGGGCAGCG
AGGGGAttgaagaggacggaggggttgAGAGTAGGCGGCTtgcgcgaaga
ggagggacgaagaaGAATAAGAGCAGGGGTTTCATCGGCTCCTCCATTGG
TGAGGTTGCAGCTGCAGTTGGATCTGGGCCTTGgggccgaggaagaagga
ggggatttTTATAATCCGGATGGGAtcaaggaagGCGACCTGGTGGAGAT
CATCGCAGACAGCACCTTCTACTCCATCCCAAAGGCTCCCAAGGAGGGCG
TCAACCCCAAAGGCTTGCAAGGGACCGTGACCATGTTGAAGTTCACGGCC
AGGAATGGCGTCACTTGTTCGGCGAACAGGCCCGTAGTTGTGAAGTTTAC
TGACCCTTACAAGTTCATGGGCCACTTTGAGTTTCGGGAGGTGAAGAGAG
tgtga

Synonyms

Publications