EWM27413.1, cds3265 (CDS) Nannochloropsis gaditana

Overview
NameEWM27413.1
Unique Namecds3265
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:1199639..1199960 +
Alignment locationCM002460.1:1200125..1200232 +
Alignment locationCM002460.1:1200377..1200454 +
Alignment locationCM002460.1:1200588..1200670 +
Alignment locationCM002460.1:1200876..1200935 +

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Properties
Property NameValue
Protein idEWM27413.1
ProductElectron transport accessory protein-like domain protein
Orig transcript idgnl|cribi|Naga_100237g2.1705.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:1199639..1199960 +
CM002460.1supercontigCM002460.1:1200125..1200232 +
CM002460.1supercontigCM002460.1:1200377..1200454 +
CM002460.1supercontigCM002460.1:1200588..1200670 +
CM002460.1supercontigCM002460.1:1200876..1200935 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0015979photosynthesis
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR008990Elect_transpt_acc-like_dom
Homology
[Close]
BLAST of EWM27413.1 vs. NCBI_GenBank
Match: gi|585109646|gb|EWM27413.1| (Electron transport accessory protein-like domain protein [Nannochloropsis gaditana])

HSP 1 Score: 439.113 bits (1128), Expect = 8.188e-156
Identity = 216/216 (100.00%), Postives = 216/216 (100.00%), Query Frame = 0 
Query:    1 MQMPFVNTLDALFHASHSRRLGEGNVQGNTSSTSSSDPPSTLMLSALGRREVTIVLAVILASVVACLLTPCAQGFVLTTGAARGLKRTEGLRVGGLREEEGRRRIRAGVSSAPPLVRLQLQLDLGLGAEEEGGDFYNPDGIKEGDLVEIIADSTFYSIPKAPKEGVNPKGLQGTVTMLKFTARNGVTCSANRPVVVKFTDPYKFMGHFEFREVKRV 216
            MQMPFVNTLDALFHASHSRRLGEGNVQGNTSSTSSSDPPSTLMLSALGRREVTIVLAVILASVVACLLTPCAQGFVLTTGAARGLKRTEGLRVGGLREEEGRRRIRAGVSSAPPLVRLQLQLDLGLGAEEEGGDFYNPDGIKEGDLVEIIADSTFYSIPKAPKEGVNPKGLQGTVTMLKFTARNGVTCSANRPVVVKFTDPYKFMGHFEFREVKRV
Sbjct:    1 MQMPFVNTLDALFHASHSRRLGEGNVQGNTSSTSSSDPPSTLMLSALGRREVTIVLAVILASVVACLLTPCAQGFVLTTGAARGLKRTEGLRVGGLREEEGRRRIRAGVSSAPPLVRLQLQLDLGLGAEEEGGDFYNPDGIKEGDLVEIIADSTFYSIPKAPKEGVNPKGLQGTVTMLKFTARNGVTCSANRPVVVKFTDPYKFMGHFEFREVKRV 216
[Close]
BLAST of EWM27413.1 vs. NCBI_GenBank
Match: gi|553183790|ref|XP_005853968.1| (hypothetical protein NGA_0456200 [Nannochloropsis gaditana CCMP526] >gi|422295094|gb|EKU22393.1| hypothetical protein NGA_0456200 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 251.136 bits (640), Expect = 7.844e-83
Identity = 126/127 (99.21%), Postives = 126/127 (99.21%), Query Frame = 0 
Query:   43 MLSALGRREVTIVLAVILASVVACLLTPCAQGFVLTTGAARGLKRTEGLRVGGLREEEGRRRIRAGVSSAPPLVRLQLQLDLGLGAEEEGGDFYNPDGIKEGDLVEIIADSTFYSIPKAPKEGVNPK 169
            MLSALGRREVTIVLAVILASVVACLLTPCAQGFVLTTGAARGLKRTEGLRVGGLREEEGRRRIRAG SSAPPLVRLQLQLDLGLGAEEEGGDFYNPDGIKEGDLVEIIADSTFYSIPKAPKEGVNPK
Sbjct:    1 MLSALGRREVTIVLAVILASVVACLLTPCAQGFVLTTGAARGLKRTEGLRVGGLREEEGRRRIRAGASSAPPLVRLQLQLDLGLGAEEEGGDFYNPDGIKEGDLVEIIADSTFYSIPKAPKEGVNPK 127
[Close]
BLAST of EWM27413.1 vs. NCBI_GenBank
Match: gi|298708644|emb|CBJ26131.1| (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 66.2402 bits (160), Expect = 7.444e-10
Identity = 35/82 (42.68%), Postives = 51/82 (62.20%), Query Frame = 0 
Query:  137 NPDGIKEGDLVEIIADS-TFYSIPKAPKEGVNPKGLQGTVTMLKFTARN--GVTCSANRPVVVKFTDPYKFMGHFEFREVKR 215
            NPDG+KEGD + +IA   TFY + +  K+G +P+G  G ++ L   ++   G   +A+RPVV  FT P KF  H EF EV++
Sbjct:   89 NPDGLKEGDPITVIAKGLTFYHV-RGHKDGFDPEGCVGQISSLYIMSKKYEGEFSTAHRPVVCTFTHPKKFKAHLEFGEVRK 169
The following BLAST results are available for this feature:
BLAST of EWM27413.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585109646|gb|EWM27413.1|8.188e-156100.00Electron transport accessory protein-like domain p... [more]
gi|553183790|ref|XP_005853968.1|7.844e-8399.21hypothetical protein NGA_0456200 [Nannochloropsis ... [more]
gi|298708644|emb|CBJ26131.1|7.444e-1042.68expressed unknown protein [Ectocarpus siliculosus][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3274rna3274Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications