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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100237g6.1700.mrna |
| Orig protein id | gnl|cribi|Naga_100237g6.1700 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002460.1 | supercontig | CM002460.1:1193193..1194469 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna3271 ID=rna3271|Name=rna3271|organism=Nannochloropsis gaditana|type=mRNA|length=2887bp
TCTCACAGTCATGGCAGCTGGTGAGAGCAGTCTGGACGACGAGCTGGCAG
CCCTCAGCTTTGAGATCGAAGCCAGCAGCAACAGCGACGGGCAGGACGGG
AGGGGAGATGCTGGCCTTGTTCCACGGCGGGGGGGGGGGCGTTCAATGGC
GCCTGGGAGCAAAAATGTCGTTTGCATCCATTATTTGGTGGGCATGTGTG
CCTTAGACAAGGATTGTCCATACTTGCACCAGTACGACTTGGACCGTGTG
CCAATTTGCCCATTCGGGAGTAAATGCGTAAGAGACGACGACTGCCCTTT
CAAGCACGTGACAGAGGAGGACAAGACGGAATGTGTTTTTTATCGACAGG
GTTTTTGCATGTATGGCCCTTTCTGCCGCTACAAGCATGTCCATCGCAAC
CCAGAAGACGCGCCCGAGCAAGGCGAATTCAACATATCCTCCCAAAAAGC
GGCAGACGAGGCCGCCGCCGCCGCGGCTGAGGGGGGGAATGTGAGCGGAG
AGGGCAACAGCTATCCGCCTGGAGCGTCATCAGGACTCCCCGGCAATGTG
GTGGGTGGCTTCGGAGGGGGCAGAGTGGGGGAGATGGCAGGGGCGCGGGG
AGGGCGAGCAGGGGTGGTTGTGCCACAGCAGCTGCAGCTTTTGTCGATGC
ACCAGCAGCAATCGCAGCCACAGCATGGGGCCGCCTCTCCCTTTGGGTTG
GCTTCTGGGACGGGCATGGGCGGAGGGCGGGAGGGAGGACGGGAAGGGGG
GAGGGACCGGCGGCCGGGCGGTGCGCTGGAGCGGAACGAGAATTACAAGA
CGACGCTATGCAACCACTGGCTCAGCAACAAGGGCCTCTGTCCGTTTGGC
GATGACTGTGTGTTTGCGCACGGAGAGACGGAGCTTCGGAAGCACCCGCT
TGCCATTGCAAGGGAGCAGCAGCAGGCGCACAGGGCCGGGGGAGGGCGCG
GTGAGACTGATGGGAGAGAGGGAGGGCTGGGAAGGAAGATCCGCTTCCCC
GACTTGGGTTTACCCTGGCCCGATCAAGCCCGCGTGCGATTCTTCGTCAT
CAAATCGCTCAACTATAAAAACCTCGCCCAGTCCGTCCGCAGGGGGGTGT
GGCGCACCCACCGGAACAACGAGCGGACTCTCAACGAGGCCTTCCGTACC
TGTGACAAGGTTGTGCTCTTCTACTCGGTGAACGAGTCGGGGCATTGGCA
GGGGGCGGCAGTGATGACTTCCCCCATACGGTCCCAGCAGCAACCTCCCC
ACCTCCCGCCCCTCCAGATGCTCCAGCACCATCAAGACGGGTGGACGGCG
GAGTTCTCCTTGGAATGGCTCCGGCTAGTGTCCCTCCCGTTCCCGCACAC
GCGTCCTCTCCGCAACCCCCTGAACGACAATTTACCCATCTCCCGCTCTC
GCGATTGCCAGGAATTGACGCCTGAAATCGGTCGTCAGCTGCTCTACCTC
ATTTACTCTTCCTCCGAAGTCTCTCTCGCCTTAGGGGGGGCTGAGGCCAG
CCTACCTGGCGGTGGCTTCGGTGGGGGAGGAGGACCCTATGGCTCATTTG
GGGCCTCTGGGGGAGGTCGGGGAGGAGGAGGGGGTGGAGGAGGGGTGTTG
GACGGGGGAGGAGGGAATGGAGGAGGAGGAGGCGCTCAGCAAGACCAGCA
CCCTCTTCCGCGAGGAGGGGAAGGGGGGGGACCTCAGCAGGGAGAGGGAG
GGGAAGGGATCGGACAGACCTTCCCCGTCTTTTCGGGGCAAGGCTTCATC
TTTCCTTGCACCGAGGAAACTCTGGATGAGTGTCTGGGCCGGGGGCTCTT
CTCCTTGCCCGCGGGCGGGGCCTTGGAGACCTATGCGAAGGAGGTGGTCC
TCCCCGGATCGACCCTCTTTCTCGCCAACGCCACCGACAGGACTCTCTTC
GGCATTTTCGAAGCCGCCTCCCCTGTCGCCTACAATTTGGAGCGGACCAG
CACCAGTACCATGTACCCCTTGCAGGTCCGCATCCGCTGCCTGTTGGAAG
CCCCCCCGCTCACGGAATCCGACCCGGACGTTCGATCTATTCTGGGCCCG
CTCCCCGCTTCGAGCCCACTCGGTCGCGCCGGTCCCTTGAGTGAGAACCA
GACACAACGCCTCGCTACGTTGCTCGCCAGCCGTGCCAAGGCCCTCCCTC
TCTTCCTCCCCCCCTCCACTCCGACCTTCCTCTCCTCCTACTCCTCGTCC
TCGTCCTCGTCCTCCTTCCTCCCGCTTCTACGGGGGCCGAGCGGGAAGGA
GGGAGGACGAGAGCGGGGGTTGTCCCTAGAGAGCACAGGGTCGACGAGTG
CGTCCACGAGCCTGGCGTCGACCGAGTCAAACAGCCCGGGCGCGGGGTAT
CGGAGTCTTCCCCCCCTGGCCACCATGCACCTCCAGCAAAAGCAGCAGCA
GCAGCAGCAGCAGAAGCAACAGCTGCAGCAGCAGCAGAGTCGCCTTTTGC
TGGGAGGCATCGGGGGCAGGGGCCTGCTCAACGGGTCCTCGTCCACCACC
AGCAGTAGCAGTAGCAGCAGCATCGTGTCCTCAATGAGCGGGACTTCGAC
CGGGGCGGTCGTGAACAAGGGCTTTCTAGAAGGTCTTTCCCCCCCGCGGA
GGCTGGGGCTTTCTCCCTCGCTGTCCCATCTATCCGTTGGTTCTCAGCAC
CACCACCACCACCAGCAACAGCAGCAGCAACAGCAGCAGCAATCATCTCA
ACGACAGCAGATCTCACAGCACGCGCATATGCAGCAGCAAGATCAAGATA
CGCAACAGCAGCTGCTGGCACGACCTGGGGAACAAGGTGTGCTCGGAAAT
AGCCCGAGCAGCGCGCTGCACTTGCCTCCGTTCGGTGGAGGAATCCCGCC
CAGGATTCAGCTACCAGCGTCCTGGCGACCTTTGTAG back to topprotein sequence of rna3271 >rna3271-protein ID=rna3271-protein|Name=rna3271|organism=Nannochloropsis gaditana|type=polypeptide|length=252bp
MKWVTDEPRHGPAYSIEACSMRTVLTLSMVSDERVDTTIKSPQRWQGGEL
KTHQRFSTSDELVTFVRLLTPTFPLLGGRGRKERQGRREKNRRKKSESIY
FYLTASNVRIVPAKGLYNVEKGGGSKGEGRETRIKVTGRAFGWSETAQAS
DGYTRDKTNKIVDLRNPLSLWQKNCSGVNVGGRPRQRRIRKGARLDDIIY
GTEGKQYSNLSPHFHRDQNKFMTSNHTRQSGTRKSKERSATEVGPDGGRM
TV back to topmRNA from alignment at CM002460.1:1193193..1194469+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna3271 ID=rna3271|Name=rna3271|organism=Nannochloropsis gaditana|type=mRNA|length=1277bp|location=Sequence derived from alignment at CM002460.1:1193193..1194469+ (Nannochloropsis gaditana)
ATGAAATGGGTCACGGATGAGCCTCGTCACGGACCGGCTTACAGCATAGA
GGCATGTTCGATGCGGACTGTCCTCACCTTAAGCATGGTCTCCGATGAAC
GTGTTGATACTACCATCAAGAGCCCGCAACgatggcagggaggggagctg
TGATCCATAGCTGGAGATGAGCCAAAAGTGGGAGCGGTAGGCCTTCCAAG
TAATGCTCGAGTAAGACGCATCAAAGATTTTCGACCTCTGACGAACTAGT
GACTTTTGTGCGTGCATGGGGATGCTAAATCCCATTTAATATCTTGATGG
ACAGGTCTCCTCACTCCAACTTTTCCTTTGTTAGGAGGTCGAGGCAGAAA
GGAGagacaaggaaggcgggaaaagaaccgaaggaagaaaagtgAATCTA
TCTATTTCTACCTGACAGCGAGTAACGTAAGAATAGTACCAGCGAAAGGA
CTATATAAGTGTACATGCAGTCAACTGACTTAGGTTTTAGAAAAGCCGCA
AGAGCGTGGAGAAGGGTGGCGGAAgcaaaggggaaggacgtgaGACAAGG
ATCAAGGTCACGGTCTACATTTATTGAAAGACTGCGATTTCCTGGATTTC
TGAGGAAATAAGACGAATTTGAAAGGAGGCTCAAAATACAGGAGAAGGGT
AATGATGATTTAAAACGTTTATCAATTTTGCAAGCAGGGTCGGGCGTTTG
GATGGTCGGAAACAGCCCAGGCATCAGACGGCTATACGAGGGACAAAACA
AATAAGATTGTAGATTTGCGTAATCCGCTGTCGTTGTGGCAGAAGAACTG
CAGCGGCGTGAATGTGGGCGGTGCAAGAATTTAAGTCGTTTGGGTAGATG
TTGAAAGAAGTCTCAACCTTAAAAATGTGGACTTGACAGAGGGAGACCTA
GACAACGGAGGATCAGAAAAGGGGCTCGTCTGGGTTAAAAGGAttgagaa
agagaaagtggAAGAGTGGAGAGAGCAGAGATAATTGTGCTGCAAAGAAG
ATGCCTCTTAAAACCTAGATGACATAATATATGGAACGGAAGGGAAACAA
TACAGCAACCTTTCACCACACTTTCACCGGGACCAGAATAAATTCATGAC
AAGCAATCATAGTAACGACTACTGATGCAGCGATTAGAGGAGCAAATGGG
TAGCTTGAATGCGTCTCGTGCCAGAGTAATATGAAACCATTAATGAGCCC
GTCAATCAGGAACTAGAAAGAGCAAAGAGAGGTCCGCGACTGAAGTCGGT
CCGGACGGAGGGCGAATGACGGTATGA back to topCoding sequence (CDS) from alignment at CM002460.1:1193193..1194469+ >rna3271 ID=rna3271|Name=rna3271|organism=Nannochloropsis gaditana|type=CDS|length=6072bp|location=Sequence derived from alignment at CM002460.1:1193193..1194469+ (Nannochloropsis gaditana)
ATGAAATGGGTCACGGATGAGCCTCGTCACGGACCGGCTTACAGCATAGA
GGCATGTTCGATGCGGACTGTCCTCACCTTAAGCATGGTCTCCGATGAAC
GTGTTGATACTACCATCAAGAGCCCGCAACgatggcagggaggggagctT
AAGACGCATCAAAGATTTTCGACCTCTGACGAACTAGTGACTTTTGTGCG
TCTCCTCACTCCAACTTTTCCTTTGTTAGGAGGTCGAGGCAGAAAGGAGa
gacaaggaaggcgggaaaagaaccgaaggaagaaaagtgAATCTATCTAT
TTCTACCTGACAGCGAGTAACGTAAGAATAGTACCAGCGAAAGGACTATA
TAACGTGGAGAAGGGTGGCGGAAgcaaaggggaaggacgtgaGACAAGGA
TCAAGGTCACGGGTCGGGCGTTTGGATGGTCGGAAACAGCCCAGGCATCA
GACGGCTATACGAGGGACAAAACAAATAAGATTGTAGATTTGCGTAATCC
GCTGTCGTTGTGGCAGAAGAACTGCAGCGGCGTGAATGTGGGCGGGAGAC
CTAGACAACGGAGGATCAGAAAAGGGGCTCGTCTGGATGACATAATATAT
GGAACGGAAGGGAAACAATACAGCAACCTTTCACCACACTTTCACCGGGA
CCAGAATAAATTCATGACAAGCAATCATACCCGTCAATCAGGAACTAGAA
AGAGCAAAGAGAGGTCCGCGACTGAAGTCGGTCCGGACGGAGGGCGAATG
ACGGTATGAATGAAATGGGTCACGGATGAGCCTCGTCACGGACCGGCTTA
CAGCATAGAGGCATGTTCGATGCGGACTGTCCTCACCTTAAGCATGGTCT
CCGATGAACGTGTTGATACTACCATCAAGAGCCCGCAACgatggcaggga
ggggagctTAAGACGCATCAAAGATTTTCGACCTCTGACGAACTAGTGAC
TTTTGTGCGTCTCCTCACTCCAACTTTTCCTTTGTTAGGAGGTCGAGGCA
GAAAGGAGagacaaggaaggcgggaaaagaaccgaaggaagaaaagtgAA
TCTATCTATTTCTACCTGACAGCGAGTAACGTAAGAATAGTACCAGCGAA
AGGACTATATAACGTGGAGAAGGGTGGCGGAAgcaaaggggaaggacgtg
aGACAAGGATCAAGGTCACGGGTCGGGCGTTTGGATGGTCGGAAACAGCC
CAGGCATCAGACGGCTATACGAGGGACAAAACAAATAAGATTGTAGATTT
GCGTAATCCGCTGTCGTTGTGGCAGAAGAACTGCAGCGGCGTGAATGTGG
GCGGGAGACCTAGACAACGGAGGATCAGAAAAGGGGCTCGTCTGGATGAC
ATAATATATGGAACGGAAGGGAAACAATACAGCAACCTTTCACCACACTT
TCACCGGGACCAGAATAAATTCATGACAAGCAATCATACCCGTCAATCAG
GAACTAGAAAGAGCAAAGAGAGGTCCGCGACTGAAGTCGGTCCGGACGGA
GGGCGAATGACGGTATGAATGAAATGGGTCACGGATGAGCCTCGTCACGG
ACCGGCTTACAGCATAGAGGCATGTTCGATGCGGACTGTCCTCACCTTAA
GCATGGTCTCCGATGAACGTGTTGATACTACCATCAAGAGCCCGCAACga
tggcagggaggggagctTAAGACGCATCAAAGATTTTCGACCTCTGACGA
ACTAGTGACTTTTGTGCGTCTCCTCACTCCAACTTTTCCTTTGTTAGGAG
GTCGAGGCAGAAAGGAGagacaaggaaggcgggaaaagaaccgaaggaag
aaaagtgAATCTATCTATTTCTACCTGACAGCGAGTAACGTAAGAATAGT
ACCAGCGAAAGGACTATATAACGTGGAGAAGGGTGGCGGAAgcaaagggg
aaggacgtgaGACAAGGATCAAGGTCACGGGTCGGGCGTTTGGATGGTCG
GAAACAGCCCAGGCATCAGACGGCTATACGAGGGACAAAACAAATAAGAT
TGTAGATTTGCGTAATCCGCTGTCGTTGTGGCAGAAGAACTGCAGCGGCG
TGAATGTGGGCGGGAGACCTAGACAACGGAGGATCAGAAAAGGGGCTCGT
CTGGATGACATAATATATGGAACGGAAGGGAAACAATACAGCAACCTTTC
ACCACACTTTCACCGGGACCAGAATAAATTCATGACAAGCAATCATACCC
GTCAATCAGGAACTAGAAAGAGCAAAGAGAGGTCCGCGACTGAAGTCGGT
CCGGACGGAGGGCGAATGACGGTATGAATGAAATGGGTCACGGATGAGCC
TCGTCACGGACCGGCTTACAGCATAGAGGCATGTTCGATGCGGACTGTCC
TCACCTTAAGCATGGTCTCCGATGAACGTGTTGATACTACCATCAAGAGC
CCGCAACgatggcagggaggggagctTAAGACGCATCAAAGATTTTCGAC
CTCTGACGAACTAGTGACTTTTGTGCGTCTCCTCACTCCAACTTTTCCTT
TGTTAGGAGGTCGAGGCAGAAAGGAGagacaaggaaggcgggaaaagaac
cgaaggaagaaaagtgAATCTATCTATTTCTACCTGACAGCGAGTAACGT
AAGAATAGTACCAGCGAAAGGACTATATAACGTGGAGAAGGGTGGCGGAA
gcaaaggggaaggacgtgaGACAAGGATCAAGGTCACGGGTCGGGCGTTT
GGATGGTCGGAAACAGCCCAGGCATCAGACGGCTATACGAGGGACAAAAC
AAATAAGATTGTAGATTTGCGTAATCCGCTGTCGTTGTGGCAGAAGAACT
GCAGCGGCGTGAATGTGGGCGGGAGACCTAGACAACGGAGGATCAGAAAA
GGGGCTCGTCTGGATGACATAATATATGGAACGGAAGGGAAACAATACAG
CAACCTTTCACCACACTTTCACCGGGACCAGAATAAATTCATGACAAGCA
ATCATACCCGTCAATCAGGAACTAGAAAGAGCAAAGAGAGGTCCGCGACT
GAAGTCGGTCCGGACGGAGGGCGAATGACGGTATGAATGAAATGGGTCAC
GGATGAGCCTCGTCACGGACCGGCTTACAGCATAGAGGCATGTTCGATGC
GGACTGTCCTCACCTTAAGCATGGTCTCCGATGAACGTGTTGATACTACC
ATCAAGAGCCCGCAACgatggcagggaggggagctTAAGACGCATCAAAG
ATTTTCGACCTCTGACGAACTAGTGACTTTTGTGCGTCTCCTCACTCCAA
CTTTTCCTTTGTTAGGAGGTCGAGGCAGAAAGGAGagacaaggaaggcgg
gaaaagaaccgaaggaagaaaagtgAATCTATCTATTTCTACCTGACAGC
GAGTAACGTAAGAATAGTACCAGCGAAAGGACTATATAACGTGGAGAAGG
GTGGCGGAAgcaaaggggaaggacgtgaGACAAGGATCAAGGTCACGGGT
CGGGCGTTTGGATGGTCGGAAACAGCCCAGGCATCAGACGGCTATACGAG
GGACAAAACAAATAAGATTGTAGATTTGCGTAATCCGCTGTCGTTGTGGC
AGAAGAACTGCAGCGGCGTGAATGTGGGCGGGAGACCTAGACAACGGAGG
ATCAGAAAAGGGGCTCGTCTGGATGACATAATATATGGAACGGAAGGGAA
ACAATACAGCAACCTTTCACCACACTTTCACCGGGACCAGAATAAATTCA
TGACAAGCAATCATACCCGTCAATCAGGAACTAGAAAGAGCAAAGAGAGG
TCCGCGACTGAAGTCGGTCCGGACGGAGGGCGAATGACGGTATGAATGAA
ATGGGTCACGGATGAGCCTCGTCACGGACCGGCTTACAGCATAGAGGCAT
GTTCGATGCGGACTGTCCTCACCTTAAGCATGGTCTCCGATGAACGTGTT
GATACTACCATCAAGAGCCCGCAACgatggcagggaggggagctTAAGAC
GCATCAAAGATTTTCGACCTCTGACGAACTAGTGACTTTTGTGCGTCTCC
TCACTCCAACTTTTCCTTTGTTAGGAGGTCGAGGCAGAAAGGAGagacaa
ggaaggcgggaaaagaaccgaaggaagaaaagtgAATCTATCTATTTCTA
CCTGACAGCGAGTAACGTAAGAATAGTACCAGCGAAAGGACTATATAACG
TGGAGAAGGGTGGCGGAAgcaaaggggaaggacgtgaGACAAGGATCAAG
GTCACGGGTCGGGCGTTTGGATGGTCGGAAACAGCCCAGGCATCAGACGG
CTATACGAGGGACAAAACAAATAAGATTGTAGATTTGCGTAATCCGCTGT
CGTTGTGGCAGAAGAACTGCAGCGGCGTGAATGTGGGCGGGAGACCTAGA
CAACGGAGGATCAGAAAAGGGGCTCGTCTGGATGACATAATATATGGAAC
GGAAGGGAAACAATACAGCAACCTTTCACCACACTTTCACCGGGACCAGA
ATAAATTCATGACAAGCAATCATACCCGTCAATCAGGAACTAGAAAGAGC
AAAGAGAGGTCCGCGACTGAAGTCGGTCCGGACGGAGGGCGAATGACGGT
ATGAATGAAATGGGTCACGGATGAGCCTCGTCACGGACCGGCTTACAGCA
TAGAGGCATGTTCGATGCGGACTGTCCTCACCTTAAGCATGGTCTCCGAT
GAACGTGTTGATACTACCATCAAGAGCCCGCAACgatggcagggagggga
gctTAAGACGCATCAAAGATTTTCGACCTCTGACGAACTAGTGACTTTTG
TGCGTCTCCTCACTCCAACTTTTCCTTTGTTAGGAGGTCGAGGCAGAAAG
GAGagacaaggaaggcgggaaaagaaccgaaggaagaaaagtgAATCTAT
CTATTTCTACCTGACAGCGAGTAACGTAAGAATAGTACCAGCGAAAGGAC
TATATAACGTGGAGAAGGGTGGCGGAAgcaaaggggaaggacgtgaGACA
AGGATCAAGGTCACGGGTCGGGCGTTTGGATGGTCGGAAACAGCCCAGGC
ATCAGACGGCTATACGAGGGACAAAACAAATAAGATTGTAGATTTGCGTA
ATCCGCTGTCGTTGTGGCAGAAGAACTGCAGCGGCGTGAATGTGGGCGGG
AGACCTAGACAACGGAGGATCAGAAAAGGGGCTCGTCTGGATGACATAAT
ATATGGAACGGAAGGGAAACAATACAGCAACCTTTCACCACACTTTCACC
GGGACCAGAATAAATTCATGACAAGCAATCATACCCGTCAATCAGGAACT
AGAAAGAGCAAAGAGAGGTCCGCGACTGAAGTCGGTCCGGACGGAGGGCG
AATGACGGTATGAATGAAATGGGTCACGGATGAGCCTCGTCACGGACCGG
CTTACAGCATAGAGGCATGTTCGATGCGGACTGTCCTCACCTTAAGCATG
GTCTCCGATGAACGTGTTGATACTACCATCAAGAGCCCGCAACgatggca
gggaggggagctTAAGACGCATCAAAGATTTTCGACCTCTGACGAACTAG
TGACTTTTGTGCGTCTCCTCACTCCAACTTTTCCTTTGTTAGGAGGTCGA
GGCAGAAAGGAGagacaaggaaggcgggaaaagaaccgaaggaagaaaag
tgAATCTATCTATTTCTACCTGACAGCGAGTAACGTAAGAATAGTACCAG
CGAAAGGACTATATAACGTGGAGAAGGGTGGCGGAAgcaaaggggaagga
cgtgaGACAAGGATCAAGGTCACGGGTCGGGCGTTTGGATGGTCGGAAAC
AGCCCAGGCATCAGACGGCTATACGAGGGACAAAACAAATAAGATTGTAG
ATTTGCGTAATCCGCTGTCGTTGTGGCAGAAGAACTGCAGCGGCGTGAAT
GTGGGCGGGAGACCTAGACAACGGAGGATCAGAAAAGGGGCTCGTCTGGA
TGACATAATATATGGAACGGAAGGGAAACAATACAGCAACCTTTCACCAC
ACTTTCACCGGGACCAGAATAAATTCATGACAAGCAATCATACCCGTCAA
TCAGGAACTAGAAAGAGCAAAGAGAGGTCCGCGACTGAAGTCGGTCCGGA
CGGAGGGCGAATGACGGTATGA back to top
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