EWM27408.1, cds3262 (CDS) Nannochloropsis gaditana

Overview
NameEWM27408.1
Unique Namecds3262
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:1193193..1193341 +
Alignment locationCM002460.1:1193404..1193453 +
Alignment locationCM002460.1:1193497..1193650 +
Alignment locationCM002460.1:1193697..1193754 +
Alignment locationCM002460.1:1193880..1194012 +
Alignment locationCM002460.1:1194084..1194125 +
Alignment locationCM002460.1:1194211..1194303 +
Alignment locationCM002460.1:1194390..1194469 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27408.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100237g6.1700.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:1193193..1193341 +
CM002460.1supercontigCM002460.1:1193404..1193453 +
CM002460.1supercontigCM002460.1:1193497..1193650 +
CM002460.1supercontigCM002460.1:1193697..1193754 +
CM002460.1supercontigCM002460.1:1193880..1194012 +
CM002460.1supercontigCM002460.1:1194084..1194125 +
CM002460.1supercontigCM002460.1:1194211..1194303 +
CM002460.1supercontigCM002460.1:1194390..1194469 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
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BLAST of EWM27408.1 vs. NCBI_GenBank
Match: gi|585109641|gb|EWM27408.1| (hypothetical protein Naga_100237g6 [Nannochloropsis gaditana])

HSP 1 Score: 519.62 bits (1337), Expect = 0.000e+0
Identity = 252/252 (100.00%), Postives = 252/252 (100.00%), Query Frame = 0 
Query:    1 MKWVTDEPRHGPAYSIEACSMRTVLTLSMVSDERVDTTIKSPQRWQGGELKTHQRFSTSDELVTFVRLLTPTFPLLGGRGRKERQGRREKNRRKKSESIYFYLTASNVRIVPAKGLYNVEKGGGSKGEGRETRIKVTGRAFGWSETAQASDGYTRDKTNKIVDLRNPLSLWQKNCSGVNVGGRPRQRRIRKGARLDDIIYGTEGKQYSNLSPHFHRDQNKFMTSNHTRQSGTRKSKERSATEVGPDGGRMTV 252
            MKWVTDEPRHGPAYSIEACSMRTVLTLSMVSDERVDTTIKSPQRWQGGELKTHQRFSTSDELVTFVRLLTPTFPLLGGRGRKERQGRREKNRRKKSESIYFYLTASNVRIVPAKGLYNVEKGGGSKGEGRETRIKVTGRAFGWSETAQASDGYTRDKTNKIVDLRNPLSLWQKNCSGVNVGGRPRQRRIRKGARLDDIIYGTEGKQYSNLSPHFHRDQNKFMTSNHTRQSGTRKSKERSATEVGPDGGRMTV
Sbjct:    1 MKWVTDEPRHGPAYSIEACSMRTVLTLSMVSDERVDTTIKSPQRWQGGELKTHQRFSTSDELVTFVRLLTPTFPLLGGRGRKERQGRREKNRRKKSESIYFYLTASNVRIVPAKGLYNVEKGGGSKGEGRETRIKVTGRAFGWSETAQASDGYTRDKTNKIVDLRNPLSLWQKNCSGVNVGGRPRQRRIRKGARLDDIIYGTEGKQYSNLSPHFHRDQNKFMTSNHTRQSGTRKSKERSATEVGPDGGRMTV 252
The following BLAST results are available for this feature:
BLAST of EWM27408.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585109641|gb|EWM27408.1|0.000e+0100.00hypothetical protein Naga_100237g6 [Nannochloropsi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3271rna3271Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications